Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005841

Physical Location & Seq

Genomic Coordinates Forward (+)

24730092 .. 24736773

Gene Structure 6682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g22340.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3426 bp

ATGCGGACTTGCAATTGCGAATCGGAGCCTCAGCCCATGGAGTCAGACTCTCCAGGTTTTCCGTCGGATGATTTTGATGGAGTCTCACTCGACTTTGATCACTGGACTTCACTCATTTCAGAGATGGAAAACACATGTTCTGATGACATAGAGAAAATATCCTCTGTTTACGACTCTTTCTTGTCCGAGTTTCCGCTCTGCCATGGATATTGGAGGAGGTATGCCGATCACAAGACCCGCTTATGCAGTGTTGACAAGGCTGTTGAAATTTTCGAGCGGGCGGTGCAGGCAGCAACTTACTCTGTTCCCCTGTGGGTGGACTACTGTAACTTCAGTATGTCTGTTTTCGAAGACCCGTCTGATATTCGCAGATTATTTAAACGAGGCATGTCGTTTGTTGGAAAGGATTACTCATGCCATACTCTGTGGGACAAGTACATTGAGTTTGAGTATTCTCAGCGGGAATGGAACTCGCTGGCACAGATTTACATCCAAGCTCTAAGATTTCCTACCAAAAAGTTGCACCAGTATTATGAAAGTTTGAAGAAGTTCGCTGCCTTGTGTGAAGGGGAGATGAAATGCCACAGTAATTCTACTGAAGATTTGCAATCTGAAGTGGTGGTTGGTAGCGAAGTCCCTACATTTTATACGGATCATGAAATTGCCCTTGTTGTCAAAGACCTGCTGGATGCAGAAAATGGCTTAGACAAGCGTAAAGCACTGGAAAAGTACTTGTATACTGGAAAGCAGTTGTATCAGCAAGCCTGTCGACTAGAAGGAAAAATTGGTACTTACGAGAGCAATATAAGGAGGTCTTACTTCCATGTGAAGCCACTTGATGCGGGTCAGTTGGAGAATTGGCATTCCTATCTGGATTTTGTTGAGATGCAAGGGGATTTTGATTCGGCTGTAAAATTTTACGAGAGATGCTTGATTCCCTGTGCTAATTACCCTGAGTTTTGGATGCGTTATGTGGATTTCATGGAAATTAACGGTGGAAGAGAGATTGCAAACTATGCTCTTGACCGAGCAACCCAAATTTTTCTAAAGATGTTTATGGCCATCCTCATATGTTCGTTGCAGAGAGTGTCGGTGATTCATCTTTTCAGTTCCAGGTTTAAGGAGCAAACAGGAGATGTATCTGGTGCCCGTGCTGCTTTTCTTCATTGCGATACAGAATCAGATTCCTGTTTTGTGAAGAATGTTATGTCAAAGGCTAATATGGAAAAACGTATGGGAAATATCACGGCAGCTTCCAATACATACAAAGAAGCGCTAGAGATGGCTGCAGAGAAGAAAAAGATGCATACACTTGCTATTTTATATGTTCAATTTTCTCGACTTATATACATGATGACTGATAATGCAGATGCTGCCAGAGATGTCTTGATAGATGGCATCAAACACTTGCCTTATTCCAAATCACTTCTAGAGGAGTTGATAAATTTCGCAAGTATGCATGGGGGGAAGCAACACTTGAATGTGGTAGACTCTATTGTCGCCAAAGCAATCTCTCCAGAGTCAGGTGTATCTGATTGTCTGAATGCAAAAGATGCAGAGGATATTTCAAGTTTATATGTAGAGTTTGTTGACCTTTATGGAACCATCCATGAATTAAGAAAGGTGTGGACTCGGCATGTGCGACTGTTCCCATACTCTACAAGGACTGCTTTTTTTCATCAGAAACCTACATTTAGAAAACCTTTGGAATTGGCTAGAGAAACGGAGGAAGCTTTGGTCGTTATGCCTCAGCAGCCATCTGGAGATTTTAGTTCTGACTCCTTGATTGTGCTCCCATTGCATGACACTGTTGACAGCAAATCGTTATTGCCAGACAATCATAGTATCGAGTCTGGCGAGGAAGGAACTGATCATACATTGGACCAGGATATGCCATCACAGGGAAGTCAGCTTGAGCAGATTACCTCCGACAACCTTCAGTCAAGCCAACCTGAAAACATTCAGACACTGAAACTACCTTCTCCAGAAATTTCAAGAGAGCAACCAACACAACCGAGAGATGATAAACCTGAAGCAAATCTGTCATCTGTAGGTTTAGTAAAAGTGGAACAGGTATCTTCAGAAAATCCTGAGGAGCCCAGAGAAAATACTACTGAACCAAAGGCATCATCTGTTGAATTAGAATGTCAAGTTGCTGAAGGGAATGAAACTGTAGAATCTTCACAAGAAGTCACGGACAGGAGCGATGTTCATCGAGAGATTGACAACAAGCCTGAACAAGACCTGAAGCCACTGTCGTTGGAGAGTCTTTCTTTAAGCTCCCAGGAGAATACGAATCCGGATTCAATACCCTCCATTTTTCACAAGCGTGAAACTTCTCAAGAAACCAATACTTCAAATGAAAGGAAGCTAGAGAGCAATTGCAAATCTAATGAAGACTACAGCCCAAGAAATACCAGAGCTTTAGAAACAGCTGGAAATGAAGTGGTTAGTCCTCTGCCAATGCAAATGCCTTCTCAGCCAGCTGTAAATAGTTATGGTGACTGGCGTCGGAATAATCATTCTGGTAAAGTTCGTAGAGATTCCAAATTTGGCTTTCGGGGACGTGTACAAAGAAACTCGTATCAGCAGAAGCCACTTTCTCCTAAAAAATACCCACAAGCTGAAACGGGTCGTCCAATGCCTGGGATTCTAGGTCAACCCCCTCAACCTTTGTCCTCACAGAGCTCGCAAATTCAGCAAGGCAGCCAGGATCATAATCGATATCAAGCAGCAGCCACTCCCACTAATGTAATGGCACCTAATGCTTGGCCTATGCAGAATGTACTGGCGCCAAATTATGCCTCTTCATCTCAGCCTCAGTTGCCCGTCCAATCTGTTCCTCCACAGATGTCCCAGTCATCCGTTTTAGGCAACGTGCAGTACGGTATGCAGAACAGCCAAGCATATAATGAGATGTGGCAATATTATTACTACCAGCAGCAGCAGCTATTTCTTCTACAACAACAGATGCATCAAGCACAGCAGCAGCAACAGCCGCAACAGCAGCAGCAGGTCTTGTTGCAACAGTATCAGCTTCAGCAGCAACAACTTCAACAATATTATGCTCAGATGCAACAGCAACAATCTTATCAACAGCAACAATTGCAACAACTACAGACGCAACAGCAATTTAGTCCACAGTTCCAGATTCAACAGCCGCAAATTCAGCAACCTCATCTGCAGCCGCAAATTCAGCAACCTCATCAACAACAGCAACTTCAGGAACAACATCTGATGTACTTGCAGAAACATCAGCAGCCATTACAACAACAGTCCCTTATGCAGGAGCAGCAGCAAAATATCCCGTCCATGATTCAGCGGGACAACTACCATCAGGACCAAGCCGTCATGCCACCAAATAATTATGGAACGGTTGCATCTTCCGTATCTCCCCAAACTCATGAAGAATGTCCGCACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1142

Amino Acids

131.0

Weight (kDa)

5.27

Isoelectric Point (pI)

65.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46400 AT5G46400 AT5G46400
fragaria_vesca	FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350
malus_domestica	MD10G1267400.v1.1
prunus_persica	Prupe.4G074100_v2.0.a1 Prupe.4G074100_v2.0.a1 Prupe.4G074100_v2.0.a1
pyrus_communis	pycom10g22340
rosa_chinensis	RchiOBHm_Chr5g0012961
rosa_laevigata	RLG00000031972
rosa_multiflora	Rmu_sc0006885.1_g000007 Rmu_sc0010837.1_g000003
rosa_roxburghii	Rroxscaffold_1G00063630
rosa_rugosa	Rorug05G0005500
rosa_samantha	Rh5AG099900 Rh5BG096600 Rh5CG108800 Rh5DG095300
rosa_wichuraiana	Rw5G008720 Rw5G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1496, 3347
Acc36I	ACCTGC	2 cut(s)	690, 3004
AccB1I	GGYRCC	3 cut(s)	1145, 2758, 2791
AccB7I	CCANNNNNTGG	1 cut(s)	2645
AccBSI	CCGCTC	2 cut(s)	196, 277
AccI	GTMKAC	3 cut(s)	737, 769, 1488
AccIII	TCCGGA	1 cut(s)	2299
AclWI	GGATC	2 cut(s)	660, 2721
AcoI	YGGCCR	1 cut(s)	1059
AcsI	RAATTY	9 cut(s)	267, 914, 1038, 1444, 1989, 2549, 2694, 3165, 3192
AcyI	GRCGYC	2 cut(s)	2509, 2792
AfaI	GTAC	7 cut(s)	437, 731, 790, 2571, 2787, 2885, 3242
AfeI	AGCGCT	1 cut(s)	1275
AfiI	CCNNNNNNNGG	5 cut(s)	316, 1523, 1901, 2645, 3286
AflIII	ACRYGT	2 cut(s)	134, 2566
AjiI	CACGTC	1 cut(s)	2567
AjnI	CCWGG	6 cut(s)	52, 1112, 1884, 2283, 2644, 2709
AjuI	GAANNNNNNNTTGG	4 cut(s)	606, 638, 768, 800
AleI	CACNNNNGTG	1 cut(s)	2328
Alw21I	GWGCWC	2 cut(s)	1794, 2690
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	2 cut(s)	660, 2721
AlwNI	CAGNNNCTG	2 cut(s)	1373, 1969
Aor13HI	TCCGGA	1 cut(s)	2299
Aor51HI	AGCGCT	1 cut(s)	1275
AoxI	GGCC	2 cut(s)	1059, 2771
ApoI	RAATTY	9 cut(s)	267, 914, 1038, 1444, 1989, 2549, 2694, 3165, 3192
Asp700I	GAANNNNTTC	2 cut(s)	548, 1959
AspLEI	GCGC	2 cut(s)	1276, 2794
AspS9I	GGNCC	2 cut(s)	1882, 3340
AsuHPI	GGTGA	2 cut(s)	1105, 2513
AsuII	TTCGAA	1 cut(s)	348
AvaII	GGWCC	2 cut(s)	1882, 3340
AxyI	CCTNAGG	1 cut(s)	2091
BaeGI	GKGCMC	1 cut(s)	1150
BalI	TGGCCA	1 cut(s)	1061
BanI	GGYRCC	3 cut(s)	1145, 2758, 2791
BanII	GRGCYC	2 cut(s)	2100, 2690
BbsI	GAAGAC	2 cut(s)	357, 2403
Bbv12I	GWGCWC	2 cut(s)	1794, 2690
BbvCI	CCTCAGC	2 cut(s)	30, 1749
BccI	CCATC	9 cut(s)	71, 118, 1070, 1276, 1388, 1613, 1765, 1903, 3342
BceAI	ACGGC	2 cut(s)	1263, 3332
BcgI	CGANNNNNNTGC	2 cut(s)	749, 783
BciT130I	CCWGG	6 cut(s)	54, 1114, 1886, 2285, 2646, 2711
BclI	TGATCA	2 cut(s)	97, 1870
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	6 cut(s)	773, 1277, 1430, 1716, 2372, 2654
BfmI	CTRYAG	6 cut(s)	1287, 2049, 2172, 2401, 3116, 3182
BfoI	RGCGCY	2 cut(s)	1277, 2795
BfuAI	ACCTGC	2 cut(s)	690, 3004
BmcAI	AGTACT	1 cut(s)	731
Bme1390I	CCNGG	6 cut(s)	54, 1114, 1886, 2285, 2646, 2711
Bme18I	GGWCC	2 cut(s)	1882, 3340
BmgBI	CACGTC	1 cut(s)	2567
BmgT120I	GGNCC	2 cut(s)	1882, 3340
BmiI	GGNNCC	6 cut(s)	27, 1147, 1603, 2097, 2760, 2793
BmrFI	CCNGG	6 cut(s)	54, 1114, 1886, 2285, 2646, 2711
BmrI	ACTGGG	1 cut(s)	2851
BmuI	ACTGGG	1 cut(s)	2851
BoxI	GACNNNNGTC	1 cut(s)	2508
BpiI	GAAGAC	2 cut(s)	357, 2403
BplI	GAGNNNNNCTC	4 cut(s)	32, 64, 72, 104
BpmI	CTGGAG	4 cut(s)	36, 1500, 1782, 1968
Bpu10I	CCTNAGC	2 cut(s)	30, 1749
Bpu14I	TTCGAA	1 cut(s)	348
BpuEI	CTTGAG	2 cut(s)	1934, 2325
Bsa29I	ATCGAT	1 cut(s)	2722
BsaBI	GATNNNNATC	3 cut(s)	488, 2211, 2718
BsaHI	GRCGYC	2 cut(s)	2509, 2792
BsaJI	CCNNGG	4 cut(s)	36, 202, 2283, 2645
BsaWI	WCCGGW	1 cut(s)	2299
Bsc4I	CCNNNNNNNGG	5 cut(s)	316, 1523, 1901, 2645, 3286
Bse1I	ACTGG	7 cut(s)	107, 526, 726, 745, 2510, 2793, 2857
Bse21I	CCTNAGG	1 cut(s)	2091
Bse3DI	GCAATG	2 cut(s)	1165, 1796
Bse8I	GATNNNNATC	3 cut(s)	488, 2211, 2718
BseAI	TCCGGA	1 cut(s)	2299
BseBI	CCWGG	6 cut(s)	54, 1114, 1886, 2285, 2646, 2711
BseCI	ATCGAT	1 cut(s)	2722
BseDI	CCNNGG	4 cut(s)	36, 202, 2283, 2645
BseGI	GGATG	7 cut(s)	73, 489, 694, 969, 1062, 1605, 2861
BseJI	GATNNNNATC	3 cut(s)	488, 2211, 2718
BseLI	CCNNNNNNNGG	5 cut(s)	316, 1523, 1901, 2645, 3286
BseMI	GCAATG	2 cut(s)	1165, 1796
BseMII	CTCAG	9 cut(s)	44, 470, 945, 1763, 2082, 2492, 2828, 2834, 3083
BseNI	ACTGG	7 cut(s)	107, 526, 726, 745, 2510, 2793, 2857
BseRI	GAGGAG	3 cut(s)	229, 1448, 2108
BseSI	GKGCMC	1 cut(s)	1150
BsgI	GTGCAG	2 cut(s)	305, 2900
BshFI	GGCC	2 cut(s)	1061, 2773
BshNI	GGYRCC	3 cut(s)	1145, 2758, 2791
BshVI	ATCGAT	1 cut(s)	2722
BsiHKAI	GWGCWC	2 cut(s)	1794, 2690
BsiSI	CCGG	1 cut(s)	2300
BslFI	GGGAC	6 cut(s)	443, 620, 2577, 2839, 3262, 3338
BslI	CCNNNNNNNGG	5 cut(s)	316, 1523, 1901, 2645, 3286
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	6 cut(s)	443, 620, 2577, 2839, 3262, 3338
BsmI	GAATGC	2 cut(s)	862, 1549
BsnI	GGCC	2 cut(s)	1061, 2773
Bsp119I	TTCGAA	1 cut(s)	348
Bsp1286I	GDGCHC	4 cut(s)	1150, 1794, 2100, 2690
Bsp13I	TCCGGA	1 cut(s)	2299
Bsp1407I	TGTACA	1 cut(s)	2569
Bsp143I	GATC	5 cut(s)	97, 226, 652, 1870, 2713
Bsp19I	CCATGG	2 cut(s)	36, 202
BspANI	GGCC	2 cut(s)	1061, 2773
BspCNI	CTCAG	9 cut(s)	43, 469, 946, 1762, 2083, 2491, 2827, 2833, 3082
BspDI	ATCGAT	1 cut(s)	2722
BspEI	TCCGGA	1 cut(s)	2299
BspHI	TCATGA	2 cut(s)	655, 3403
BspLI	GGNNCC	6 cut(s)	27, 1147, 1603, 2097, 2760, 2793
BspMAI	CTGCAG	2 cut(s)	1291, 3186
BspMI	ACCTGC	2 cut(s)	690, 3004
BspPI	GGATC	2 cut(s)	660, 2721
BspT104I	TTCGAA	1 cut(s)	348
BspT107I	GGYRCC	3 cut(s)	1145, 2758, 2791
BsrBI	CCGCTC	2 cut(s)	196, 277
BsrDI	GCAATG	2 cut(s)	1165, 1796
BsrGI	TGTACA	1 cut(s)	2569
BsrI	ACTGG	7 cut(s)	107, 526, 726, 745, 2510, 2793, 2857
BssECI	CCNNGG	4 cut(s)	36, 202, 2283, 2645
BssMI	GATC	5 cut(s)	97, 226, 652, 1870, 2713
BssNAI	GTATAC	1 cut(s)	738
BssNI	GRCGYC	2 cut(s)	2509, 2792
BssT1I	CCWWGG	2 cut(s)	36, 202
Bst1107I	GTATAC	1 cut(s)	738
Bst2UI	CCWGG	6 cut(s)	54, 1114, 1886, 2285, 2646, 2711
Bst6I	CTCTTC	2 cut(s)	994, 2812
BstACI	GRCGYC	2 cut(s)	2509, 2792
BstAPI	GCANNNNNTGC	5 cut(s)	1016, 1373, 1553, 2765, 3106
BstAUI	TGTACA	1 cut(s)	2569
BstBI	TTCGAA	1 cut(s)	348
BstC8I	GCNNGC	6 cut(s)	279, 288, 477, 762, 2484, 2690
BstDSI	CCRYGG	2 cut(s)	36, 202
BstENI	CCTNNNNNAGG	1 cut(s)	3284
BstF5I	GGATG	7 cut(s)	73, 489, 694, 969, 1062, 1605, 2861
BstH2I	RGCGCY	2 cut(s)	1277, 2795
BstHHI	GCGC	2 cut(s)	1276, 2794
BstKTI	GATC	5 cut(s)	100, 229, 655, 1873, 2716
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	5 cut(s)	97, 226, 652, 1870, 2713
BstNI	CCWGG	6 cut(s)	54, 1114, 1886, 2285, 2646, 2711
BstNSI	RCATGY	3 cut(s)	138, 391, 1640
BstPAI	GACNNNNGTC	1 cut(s)	2508
BstSCI	CCNGG	6 cut(s)	52, 1112, 1884, 2283, 2644, 2709
BstSFI	CTRYAG	6 cut(s)	1287, 2049, 2172, 2401, 3116, 3182
BstSLI	GKGCMC	1 cut(s)	1150
BstV2I	GAAGAC	2 cut(s)	357, 2403
BstZ17I	GTATAC	1 cut(s)	738
Bsu15I	ATCGAT	1 cut(s)	2722
Bsu36I	CCTNAGG	1 cut(s)	2091
BsuRI	GGCC	2 cut(s)	1061, 2773
BsuTUI	ATCGAT	1 cut(s)	2722
BtgI	CCRYGG	2 cut(s)	36, 202
BtgZI	GCGATG	1 cut(s)	2220
BtrI	CACGTC	1 cut(s)	2567
BtsCI	GGATG	7 cut(s)	73, 489, 694, 969, 1062, 1605, 2861
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	6 cut(s)	100, 253, 719, 1806, 1967, 2252
BveI	ACCTGC	2 cut(s)	690, 3004
Cac8I	GCNNGC	6 cut(s)	279, 288, 477, 762, 2484, 2690
CaiI	CAGNNNCTG	2 cut(s)	1373, 1969
CciI	TCATGA	2 cut(s)	655, 3403
CfoI	GCGC	2 cut(s)	1276, 2794
Cfr13I	GGNCC	2 cut(s)	1882, 3340
ClaI	ATCGAT	1 cut(s)	2722
CseI	GACGC	2 cut(s)	2498, 3130
Csp6I	GTAC	7 cut(s)	436, 730, 789, 2570, 2786, 2884, 3241
CspCI	CAANNNNNGTGG	2 cut(s)	2241, 2276
CviQI	GTAC	7 cut(s)	436, 730, 789, 2570, 2786, 2884, 3241
DinI	GGCGCC	1 cut(s)	2793
DpnI	GATC	5 cut(s)	99, 228, 654, 1872, 2715
DpnII	GATC	5 cut(s)	97, 226, 652, 1870, 2713
DraI	TTTAAA	1 cut(s)	379
DrdI	GACNNNNNNGTC	2 cut(s)	1496, 3347
DseDI	GACNNNNNNGTC	2 cut(s)	1496, 3347
EaeI	YGGCCR	1 cut(s)	1059
Eam1104I	CTCTTC	2 cut(s)	994, 2812
EarI	CTCTTC	2 cut(s)	994, 2812
Ecl136II	GAGCTC	1 cut(s)	2688
Eco130I	CCWWGG	2 cut(s)	36, 202
Eco24I	GRGCYC	2 cut(s)	2100, 2690
Eco32I	GATATC	1 cut(s)	2726
Eco47I	GGWCC	2 cut(s)	1882, 3340
Eco47III	AGCGCT	1 cut(s)	1275
Eco53kI	GAGCTC	1 cut(s)	2688
Eco81I	CCTNAGG	1 cut(s)	2091
EcoICRI	GAGCTC	1 cut(s)	2688
EcoNI	CCTNNNNNAGG	1 cut(s)	3284
EcoRII	CCWGG	6 cut(s)	52, 1112, 1884, 2283, 2644, 2709
EcoRV	GATATC	1 cut(s)	2726
EcoT14I	CCWWGG	2 cut(s)	36, 202
EcoT22I	ATGCAT	3 cut(s)	1308, 1461, 2976
EcoT38I	GRGCYC	2 cut(s)	2100, 2690
EgeI	GGCGCC	1 cut(s)	2793
EheI	GGCGCC	1 cut(s)	2793
ErhI	CCWWGG	2 cut(s)	36, 202
FalI	AAGNNNNNCTT	8 cut(s)	224, 256, 799, 831, 1460, 1492, 1654, 1686
FaqI	GGGAC	6 cut(s)	443, 620, 2577, 2839, 3262, 3338
FauI	CCCGC	5 cut(s)	245, 270, 453, 835, 3315
FauNDI	CATATG	1 cut(s)	1070
FbaI	TGATCA	2 cut(s)	97, 1870
FblI	GTMKAC	3 cut(s)	737, 769, 1488
FokI	GGATG	7 cut(s)	80, 476, 701, 976, 1049, 1592, 2848
FriOI	GRGCYC	2 cut(s)	2100, 2690
FspBI	CTAG	6 cut(s)	773, 1277, 1430, 1716, 2372, 2654
GlaI	GCGC	2 cut(s)	1275, 2793
GsuI	CTGGAG	4 cut(s)	36, 1500, 1782, 1968
HaeII	RGCGCY	2 cut(s)	1277, 2795
HaeIII	GGCC	2 cut(s)	1061, 2773
HapII	CCGG	1 cut(s)	2300
HgaI	GACGC	2 cut(s)	2498, 3130
HhaI	GCGC	2 cut(s)	1276, 2794
Hin1I	GRCGYC	2 cut(s)	2509, 2792
Hin6I	GCGC	2 cut(s)	1274, 2792
HinP1I	GCGC	2 cut(s)	1274, 2792
HincII	GTYRAC	5 cut(s)	253, 770, 1591, 1813, 2660
HindII	GTYRAC	5 cut(s)	253, 770, 1591, 1813, 2660
HindIII	AAGCTT	1 cut(s)	1731
HpaII	CCGG	1 cut(s)	2300
HphI	GGTGA	2 cut(s)	1105, 2513
Hpy99I	CGWCG	2 cut(s)	67, 2514
HpyAV	CCTTC	7 cut(s)	560, 770, 1856, 1946, 1989, 2153, 2484
HpyCH4IV	ACGT	3 cut(s)	1231, 2566, 2877
HpySE526I	ACGT	3 cut(s)	1231, 2566, 2877
Hsp92I	GRCGYC	2 cut(s)	2509, 2792
HspAI	GCGC	2 cut(s)	1274, 2792
KasI	GGCGCC	1 cut(s)	2791
Kpn2I	TCCGGA	1 cut(s)	2299
Ksp22I	TGATCA	2 cut(s)	97, 1870
Kzo9I	GATC	5 cut(s)	97, 226, 652, 1870, 2713
LmnI	GCTCC	7 cut(s)	25, 1123, 1797, 2095, 2202, 2285, 3289
MaeI	CTAG	6 cut(s)	773, 1277, 1430, 1716, 2372, 2654
MaeII	ACGT	3 cut(s)	1231, 2566, 2877
MaeIII	GTNAC	3 cut(s)	326, 2191, 2501
MalI	GATC	5 cut(s)	99, 228, 654, 1872, 2715
MbiI	CCGCTC	2 cut(s)	196, 277
MboI	GATC	5 cut(s)	97, 226, 652, 1870, 2713
MfeI	CAATTG	3 cut(s)	13, 2380, 3104
MhlI	GDGCHC	4 cut(s)	1150, 1794, 2100, 2690
MlsI	TGGCCA	1 cut(s)	1061
MluNI	TGGCCA	1 cut(s)	1061
Mly113I	GGCGCC	1 cut(s)	2792
MmeI	TCCRAC	6 cut(s)	45, 379, 831, 1953, 2241, 2492
Mox20I	TGGCCA	1 cut(s)	1061
Mph1103I	ATGCAT	3 cut(s)	1308, 1461, 2976
MroI	TCCGGA	1 cut(s)	2299
MroXI	GAANNNNTTC	2 cut(s)	548, 1959
MscI	TGGCCA	1 cut(s)	1061
MseI	TTAA	5 cut(s)	378, 990, 1119, 1616, 2276
MslI	CAYNNNNRTG	2 cut(s)	1479, 2328
Msp20I	TGGCCA	1 cut(s)	1061
MspA1I	CMGCKG	4 cut(s)	460, 2435, 2486, 3322
MspI	CCGG	1 cut(s)	2300
MspR9I	CCNGG	6 cut(s)	54, 1114, 1886, 2285, 2646, 2711
MunI	CAATTG	3 cut(s)	13, 2380, 3104
Mva1269I	GAATGC	2 cut(s)	862, 1549
MvaI	CCWGG	6 cut(s)	54, 1114, 1886, 2285, 2646, 2711
NarI	GGCGCC	1 cut(s)	2792
NcoI	CCATGG	2 cut(s)	36, 202
NdeI	CATATG	1 cut(s)	1070
NdeII	GATC	5 cut(s)	97, 226, 652, 1870, 2713
NlaIV	GGNNCC	6 cut(s)	27, 1147, 1603, 2097, 2760, 2793
NmeAIII	GCCGAG	1 cut(s)	1612
NmuCI	GTSAC	2 cut(s)	2191, 2501
NsiI	ATGCAT	3 cut(s)	1308, 1461, 2976
NspI	RCATGY	3 cut(s)	138, 391, 1640
NspV	TTCGAA	1 cut(s)	348
OliI	CACNNNNGTG	1 cut(s)	2328
PagI	TCATGA	2 cut(s)	655, 3403
PciI	ACATGT	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	2 cut(s)	1639, 1854
PctI	GAATGC	2 cut(s)	862, 1549
PdmI	GAANNNNTTC	2 cut(s)	548, 1959
PflMI	CCANNNNNTGG	1 cut(s)	2645
PluTI	GGCGCC	1 cut(s)	2795
PscI	ACATGT	1 cut(s)	134
PshAI	GACNNNNGTC	1 cut(s)	2508
Psp124BI	GAGCTC	1 cut(s)	2690
Psp6I	CCWGG	6 cut(s)	52, 1112, 1884, 2283, 2644, 2709
PspGI	CCWGG	6 cut(s)	52, 1112, 1884, 2283, 2644, 2709
PspN4I	GGNNCC	6 cut(s)	27, 1147, 1603, 2097, 2760, 2793
PspPI	GGNCC	2 cut(s)	1882, 3340
PsrI	GAACNNNNNNTAC	2 cut(s)	1858, 1890
PstI	CTGCAG	2 cut(s)	1291, 3186
PstNI	CAGNNNCTG	2 cut(s)	1373, 1969
PvuII	CAGCTG	2 cut(s)	2435, 2486
RsaI	GTAC	7 cut(s)	437, 731, 790, 2571, 2787, 2885, 3242
RsaNI	GTAC	7 cut(s)	436, 730, 789, 2570, 2786, 2884, 3241
RseI	CAYNNNNRTG	2 cut(s)	1479, 2328
SacI	GAGCTC	1 cut(s)	2690
SalI	GTCGAC	1 cut(s)	768
SaqAI	TTAA	5 cut(s)	378, 990, 1119, 1616, 2276
Sau3AI	GATC	5 cut(s)	97, 226, 652, 1870, 2713
Sau96I	GGNCC	2 cut(s)	1882, 3340
ScaI	AGTACT	1 cut(s)	731
ScrFI	CCNGG	6 cut(s)	54, 1114, 1886, 2285, 2646, 2711
SduI	GDGCHC	4 cut(s)	1150, 1794, 2100, 2690
SfcI	CTRYAG	6 cut(s)	1287, 2049, 2172, 2401, 3116, 3182
SfoI	GGCGCC	1 cut(s)	2793
SfuI	TTCGAA	1 cut(s)	348
SinI	GGWCC	2 cut(s)	1882, 3340
SmiMI	CAYNNNNRTG	2 cut(s)	1479, 2328
SmlI	CTYRAG	2 cut(s)	1913, 2340
SmoI	CTYRAG	2 cut(s)	1913, 2340
SspDI	GGCGCC	1 cut(s)	2791
SspI	AATATT	2 cut(s)	2927, 3062
SspMI	CTAG	6 cut(s)	773, 1277, 1430, 1716, 2372, 2654
SstI	GAGCTC	1 cut(s)	2690
StyD4I	CCNGG	6 cut(s)	52, 1112, 1884, 2283, 2644, 2709
StyI	CCWWGG	2 cut(s)	36, 202
TaiI	ACGT	3 cut(s)	1234, 2569, 2880
TaqI	TCGA	8 cut(s)	90, 273, 348, 769, 1339, 1848, 2215, 2722
TaqII	GACCGA	1 cut(s)	1041
TatI	WGTACW	5 cut(s)	435, 729, 2569, 2785, 3240
TauI	GCSGC	3 cut(s)	3001, 3163, 3190
Tru1I	TTAA	5 cut(s)	378, 990, 1119, 1616, 2276
Tru9I	TTAA	5 cut(s)	378, 990, 1119, 1616, 2276
TscAI	CASTG	6 cut(s)	107, 253, 726, 1813, 1974, 2259
TseFI	GTSAC	2 cut(s)	2191, 2501
Tsp45I	GTSAC	2 cut(s)	2191, 2501
TspGWI	ACGGA	6 cut(s)	51, 665, 1739, 2210, 2854, 3376
TspRI	CASTG	6 cut(s)	107, 253, 726, 1813, 1974, 2259
Van91I	CCANNNNNTGG	1 cut(s)	2645
VpaK11BI	GGWCC	2 cut(s)	1882, 3340
XagI	CCTNNNNNAGG	1 cut(s)	3284
XapI	RAATTY	9 cut(s)	267, 914, 1038, 1444, 1989, 2549, 2694, 3165, 3192
XbaI	TCTAGA	1 cut(s)	1429
XceI	RCATGY	3 cut(s)	138, 391, 1640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2752
XmiI	GTMKAC	3 cut(s)	737, 769, 1488
XmnI	GAANNNNTTC	2 cut(s)	548, 1959
XspI	CTAG	6 cut(s)	773, 1277, 1430, 1716, 2372, 2654
ZrmI	AGTACT	1 cut(s)	731
Zsp2I	ATGCAT	3 cut(s)	1308, 1461, 2976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.