Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005841

Physical Location & Seq

Genomic Coordinates Forward (+)

36033406 .. 36040608

Gene Structure 7203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1267400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3399 bp

ATGCGGACTTGCAATTGCGAATCGGAGCCTCAGCCCATGGAGTCAGACTCTCCAGCTTTTCCGTCGGATGATTTTGATGGAGTCTCACTCGACTTTGATCACTGGACTTCACTCATTTCAGAGATGGAAAACACATATTCTGATGACATCGAGAAAATATCCTCTGTTTACGACTCTTTCTTGTCCGAGTTTCCGCTCTGCCATGGATATTGGAGGAGGTATGCCGATCACAAGACCCGCTTATGCAGTGTTGACAAGGCTGTTGAAGTTTTCGAACGGGCGGTGCAGGCTGCAACTTACTCTGTTCCCCTGTGGGTGGACTACTGTAACTTCAGTATGTCTGTTTTCGAAGACCCGTCTGATATTCGCAGATTATTTAAACGAGGCATGTCGTTTGTTGGAAAGGATTACTCATGCCATACTCTGTGGGACAAGTACATTGAGTTTGAGTATTCTCAGCGGGAATGGAGTTCGCTGGCACAGATTTACATCCAAGCTCTAAGATTTCCTACCAAAAAGTTGCACCAGTATTATGAAAGTTTGAAGAAGTTGGCTGCCTTGTGTGAAGGGGAGATGAAATGCCAGAGTAATTCTACTGAAGATTTGCAATCTGAAGCGGTGGTTGGTAGCGAAGTCCCTACATTTTATACGGATCATGAAATTGCCCTTGTTGTCAAAGACCTACTGGATGCAGAAAATGGCTTAGACAGGCGTAAAGCTCTGGAAAAGTACTTGTATACTGGAAAGCAGTTGTATCAGCAAGCATGTCGGCTAGAAGGAAAAATTGGTACTTATGAGAGCAATATAAGGAGGTCTTACTTCCATGTGAAGCCACTTGATGTGGGTCAGTTGGAGAATTGGCATTCCTATCTGGATTTTGTTGAGATGCAAGGGGATTTTGATTCGGCTGTAAAACTTTACGAGAGATGCTTGATTCCCTGTGCTAATTACCCTGAGTTTTGGATGCGTTATGTGGATTTCATGGAAATTAACGGAGGAAGAGAGATTGCAAACTATGCTCTTGACCGAGCAACCCAAATTTTTCTAAAGAGAGTGCCGGTGATTCATCTTTTCAGTTCCAGGTTTAAGGAGCAAACGGGAGATGTATCTGGTGCCCGTGCTGCTTTTCTTCATTGCGATGCAGAATCAGATTCTTGTTTTGTGAAGAATGTTATGTCAAAGGCTAATATGGAAAAACGTATGGGAAATATCACAGCAGCTTCCAATATATACAAAGAAGCGCTAGAAATGGCTGCAGAGAAGAAGAAGATGCATGCCCTTGCTATTTTATATGTTCATTTTTCTCGACTTATATACATGATGACTGATAATGCAGATGCTGCCAGAGATGTCTTGATGGATGGCATCAAACACTTACCTTATTCCAAATCACTTCTAGAGGAGTTGATAAATTTCGCAAGTATGCATGGAGGGAAGCGACACCTAAATGTGGTAGACTCTATTGTCGCCAAAGCAATCTCTCCAGAGCCAGGTGTATCTGATGGTCTGAATGCAAAAGATGCAGAGGATATTTCAAGTTTATATTTAGAGTTTGTTGACCTTTGTGGAACCATCCATGAAGTAAGAAAGGTGTGGACTCGGCATGTACGACTGTTCCCATTCTCTACAAGGACAGCTTTTTTCCATCAGAAACCTACATTTAGAAAACCTTTGGAATTGGCTAGACAAATGGAGGAAACTTTGGACGCTATGCCTCAGCAGCCATCTGGAGATTGTAGTTCTGACTCCTTGATTGTGCTCCCATTGCATGACACTGTTGACGGCAAATTGTTATTGCCAGACAATCATAGTATCGAGTCTGGCCAGGAAGGAACTGATCATACGTTGGACCAGGATATGCCATCTCAGGGAAGTCAGCTTGAGCAGATTACCTCCGACAACCTTCAATCAAGCCAACCTGAAAACATTCAGGAAACACGGAAACTACCATCTCCAGAAATTTCAAGAGAGCAACCAACACAATCAAGAGATGATAAACCCGAAGCAAATCTGTCATCTGTAGGTTTAGTAAAAGTGGAACAGGTATCTTCAGAAAATCCTGAGGAGCCCAGAGAAAATACTACTGAACCAAAGGCATCATCTGTTGAATTAGAATGTCAAGTTGCTGAAGGGAATGAAACTGTAGAATCTTCACAAGAACTCACAGACAGGAGCGATGTTCATCGAGAGATTGACAACAAGCCTGAACAAGACCTGAAGCCACTGTCATTGGAGAGTCTTTCTTTAAGCTCCCAGGAGAATACGAATCCGGATTCAATACCCTCCATTTTTCACAAGCGTGAAACTTCTCAAGAAACCAATACTTCAAATGAAAGGAAGCTAGAGAGCAATTGCAAATCTAATGAAGACTACAGCCCAAAAAATACCAGAGCTTTAGAAACAGCTGGAAATGAAGTGGTTAGTCCTAAGCCAATGCAAATGCCTTCTCAGCCAGCTGTAAATAGTTATGGTGACTGGCGTCAGAATAATCATTCCGGTAAAGTTCGTAGAGATTCCAAATTTGGCTTTCGGGGACGTCTACAAAGAAACTCATATCAGCAGAAGCCACTTTCTCCTAAAAAATACCCACAAGCTGAAACGGGTCGTCCAATGCCTGGGATTCTAGGTCAACCCCCTCAACCTTTGTCTTCACAGAGCTCGCAAATTCAGCAAGGCAGCCAGGATCATAATCGATATCAAGCAGCAGCCACTCCCACTGATGTAATGGCACCTAATGCTTGGCCTATGCAGAATGTACAAGCACCAAATTATGCCTCTTCATCTCAGCCTCAGTTGCCTGTCCAATCTGTTCCTCCACAGATGTCCCAATCATCCGTTTTAGGCAACGTACAGTATGGCATGCAGAACAGCCAAGCATATAATGAGATGTGGCAGTATTATTACTACCAGCAGCAGCAGCTGTTTCTTCTACAACAACAGATGCATCAAGCACAGCAGCAGCAACAGCCGCAACAGCAGCAGCAGGTCTTGTTGCAACAGTATCAGCTTCAGCAGCAACAACTTCAACAATATTATGCTCAGATGCAACAGCAACAATCTTATCAACAGCAACAATTGCAACAACTACAGACGCAACAGCAATTTAGTCCACAATTCCAGATGCAACAGCCGCAAATTCAGCAACCTCATCCGCAGCCGCAAATTCAGCAACTTCATCAACAACAGCAACTTCAGGAACAACATCTGATGTACTTGCAGAAACATCAGCAGCCATTACAACAACAGTCCCTTATGCAGGAGCAGCAGCAAAATATCCCGTCCATGATTCAGCGGGACAACTACCACCATCAGGACCAAGCCGTCATGCCACCAAATAATTATGGAACGGTTGCATCTTCCGTATCTCCCCAAACTCATGAAGAATGTCTGCAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1133

Amino Acids

129.96

Weight (kDa)

5.29

Isoelectric Point (pI)

66.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_PRP39_N	PF23240	29 - 183	2.9e-53	PRP39 N-terminal HAT repeat
HAT_Syf1_CNRKL1_N	PF23233	69 - 169	6.2e-09	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_C	PF23241	261 - 400	2.8e-44	PRP39 C-terminal HAT repeat
HAT_Syf1_CNRKL1_C	PF23231	286 - 475	1.7e-06	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46400 AT5G46400 AT5G46400
fragaria_vesca	FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350
malus_domestica	MD10G1267400.v1.1
prunus_persica	Prupe.4G074100_v2.0.a1 Prupe.4G074100_v2.0.a1 Prupe.4G074100_v2.0.a1
pyrus_communis	pycom10g22340
rosa_chinensis	RchiOBHm_Chr5g0012961
rosa_laevigata	RLG00000031972
rosa_multiflora	Rmu_sc0006885.1_g000007 Rmu_sc0010837.1_g000003
rosa_roxburghii	Rroxscaffold_1G00063630
rosa_rugosa	Rorug05G0005500
rosa_samantha	Rh5AG099900 Rh5BG096600 Rh5CG108800 Rh5DG095300
rosa_wichuraiana	Rw5G008720 Rw5G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1463, 3320
AatII	GACGTC	1 cut(s)	2539
Acc36I	ACCTGC	1 cut(s)	2974
AccB1I	GGYRCC	2 cut(s)	1112, 2728
AccB7I	CCANNNNNTGG	1 cut(s)	2615
AccBSI	CCGCTC	1 cut(s)	196
AccI	GTMKAC	3 cut(s)	737, 1455, 2539
AccIII	TCCGGA	1 cut(s)	2269
AclWI	GGATC	2 cut(s)	660, 2691
AcoI	YGGCCR	1 cut(s)	1822
AcsI	RAATTY	7 cut(s)	1038, 1411, 1959, 2519, 2664, 3135, 3162
AcuI	CTGAAG	8 cut(s)	316, 618, 633, 2034, 2148, 2237, 2993, 3176
AcyI	GRCGYC	2 cut(s)	2479, 2536
AfaI	GTAC	7 cut(s)	437, 731, 790, 1608, 2757, 2850, 3212
AfeI	AGCGCT	1 cut(s)	1242
AfiI	CCNNNNNNNGG	7 cut(s)	316, 1450, 1490, 1868, 2615, 3256, 3310
AgsI	TTSAA	9 cut(s)	266, 544, 1536, 1907, 1965, 2108, 2277, 2328, 3026
AjnI	CCWGG	7 cut(s)	1079, 1489, 1824, 1851, 2253, 2614, 2679
AjuI	GAANNNNNNNTTGG	4 cut(s)	606, 638, 768, 800
AleI	CACNNNNGTG	1 cut(s)	2298
Alw21I	GWGCWC	2 cut(s)	1761, 2660
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	2 cut(s)	660, 2691
AlwNI	CAGNNNCTG	2 cut(s)	1340, 2920
Aor13HI	TCCGGA	1 cut(s)	2269
Aor51HI	AGCGCT	1 cut(s)	1242
AoxI	GGCC	2 cut(s)	1822, 2741
ApoI	RAATTY	7 cut(s)	1038, 1411, 1959, 2519, 2664, 3135, 3162
Asp700I	GAANNNNTTC	1 cut(s)	1926
AspLEI	GCGC	1 cut(s)	1243
AspS9I	GGNCC	2 cut(s)	1849, 3313
AsuHPI	GGTGA	2 cut(s)	1072, 2483
AsuII	TTCGAA	2 cut(s)	273, 348
AvaII	GGWCC	2 cut(s)	1849, 3313
AxyI	CCTNAGG	1 cut(s)	2061
BaeGI	GKGCMC	1 cut(s)	1117
BalI	TGGCCA	1 cut(s)	1824
BanI	GGYRCC	2 cut(s)	1112, 2728
BanII	GRGCYC	2 cut(s)	2070, 2660
BbsI	GAAGAC	3 cut(s)	357, 2373, 2640
Bbv12I	GWGCWC	2 cut(s)	1761, 2660
BbvCI	CCTCAGC	2 cut(s)	30, 1716
BceAI	ACGGC	2 cut(s)	1798, 3305
BcgI	CGANNNNNNTGC	2 cut(s)	749, 783
BciT130I	CCWGG	7 cut(s)	1081, 1491, 1826, 1853, 2255, 2616, 2681
BclI	TGATCA	2 cut(s)	97, 1837
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	6 cut(s)	773, 1244, 1397, 1683, 2342, 2624
BfmI	CTRYAG	6 cut(s)	1254, 2019, 2142, 2371, 3086, 3389
BfoI	RGCGCY	1 cut(s)	1244
BfuAI	ACCTGC	1 cut(s)	2974
BmcAI	AGTACT	1 cut(s)	731
Bme1390I	CCNGG	7 cut(s)	1081, 1491, 1826, 1853, 2255, 2616, 2681
Bme18I	GGWCC	2 cut(s)	1849, 3313
BmgT120I	GGNCC	2 cut(s)	1849, 3313
BmiI	GGNNCC	5 cut(s)	27, 1114, 1570, 2067, 2730
BmrFI	CCNGG	7 cut(s)	1081, 1491, 1826, 1853, 2255, 2616, 2681
BoxI	GACNNNNGTC	1 cut(s)	2478
BpiI	GAAGAC	3 cut(s)	357, 2373, 2640
BplI	GAGNNNNNCTC	4 cut(s)	32, 64, 72, 104
BpmI	CTGGAG	4 cut(s)	36, 1467, 1749, 1938
Bpu10I	CCTNAGC	3 cut(s)	30, 1716, 2427
Bpu14I	TTCGAA	2 cut(s)	273, 348
BpuEI	CTTGAG	2 cut(s)	1901, 2295
Bsa29I	ATCGAT	1 cut(s)	2692
BsaBI	GATNNNNATC	3 cut(s)	488, 2181, 2688
BsaHI	GRCGYC	2 cut(s)	2479, 2536
BsaJI	CCNNGG	4 cut(s)	36, 202, 2253, 2615
BsaWI	WCCGGW	2 cut(s)	2269, 2495
Bsc4I	CCNNNNNNNGG	7 cut(s)	316, 1450, 1490, 1868, 2615, 3256, 3310
Bse118I	RCCGGY	1 cut(s)	1057
Bse1I	ACTGG	5 cut(s)	107, 526, 690, 745, 2480
Bse21I	CCTNAGG	1 cut(s)	2061
Bse3DI	GCAATG	2 cut(s)	1132, 1763
Bse8I	GATNNNNATC	3 cut(s)	488, 2181, 2688
BseAI	TCCGGA	1 cut(s)	2269
BseBI	CCWGG	7 cut(s)	1081, 1491, 1826, 1853, 2255, 2616, 2681
BseCI	ATCGAT	1 cut(s)	2692
BseDI	CCNNGG	4 cut(s)	36, 202, 2253, 2615
BseGI	GGATG	8 cut(s)	73, 489, 694, 969, 1366, 1572, 2831, 3148
BseJI	GATNNNNATC	3 cut(s)	488, 2181, 2688
BseLI	CCNNNNNNNGG	7 cut(s)	316, 1450, 1490, 1868, 2615, 3256, 3310
BseMI	GCAATG	2 cut(s)	1132, 1763
BseNI	ACTGG	5 cut(s)	107, 526, 690, 745, 2480
BseRI	GAGGAG	3 cut(s)	229, 1415, 2078
BseSI	GKGCMC	1 cut(s)	1117
BsgI	GTGCAG	1 cut(s)	305
BshFI	GGCC	2 cut(s)	1824, 2743
BshNI	GGYRCC	2 cut(s)	1112, 2728
BshVI	ATCGAT	1 cut(s)	2692
BsiHKAI	GWGCWC	2 cut(s)	1761, 2660
BsiSI	CCGG	3 cut(s)	1058, 2270, 2496
BslFI	GGGAC	6 cut(s)	443, 620, 2547, 2809, 3232, 3308
BslI	CCNNNNNNNGG	7 cut(s)	316, 1450, 1490, 1868, 2615, 3256, 3310
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	6 cut(s)	443, 620, 2547, 2809, 3232, 3308
BsmI	GAATGC	2 cut(s)	862, 1516
BsnI	GGCC	2 cut(s)	1824, 2743
Bsp119I	TTCGAA	2 cut(s)	273, 348
Bsp1286I	GDGCHC	4 cut(s)	1117, 1761, 2070, 2660
Bsp13I	TCCGGA	1 cut(s)	2269
Bsp1407I	TGTACA	1 cut(s)	2755
Bsp143I	GATC	5 cut(s)	97, 226, 652, 1837, 2683
Bsp19I	CCATGG	2 cut(s)	36, 202
BspANI	GGCC	2 cut(s)	1824, 2743
BspDI	ATCGAT	1 cut(s)	2692
BspEI	TCCGGA	1 cut(s)	2269
BspHI	TCATGA	2 cut(s)	655, 3376
BspLI	GGNNCC	5 cut(s)	27, 1114, 1570, 2067, 2730
BspMAI	CTGCAG	2 cut(s)	1258, 3393
BspMI	ACCTGC	1 cut(s)	2974
BspPI	GGATC	2 cut(s)	660, 2691
BspT104I	TTCGAA	2 cut(s)	273, 348
BspT107I	GGYRCC	2 cut(s)	1112, 2728
BsrBI	CCGCTC	1 cut(s)	196
BsrDI	GCAATG	2 cut(s)	1132, 1763
BsrFI	RCCGGY	1 cut(s)	1057
BsrGI	TGTACA	1 cut(s)	2755
BsrI	ACTGG	5 cut(s)	107, 526, 690, 745, 2480
BssAI	RCCGGY	1 cut(s)	1057
BssECI	CCNNGG	4 cut(s)	36, 202, 2253, 2615
BssMI	GATC	5 cut(s)	97, 226, 652, 1837, 2683
BssNAI	GTATAC	1 cut(s)	738
BssNI	GRCGYC	2 cut(s)	2479, 2536
BssT1I	CCWWGG	2 cut(s)	36, 202
Bst1107I	GTATAC	1 cut(s)	738
Bst2UI	CCWGG	7 cut(s)	1081, 1491, 1826, 1853, 2255, 2616, 2681
Bst4CI	ACNGT	9 cut(s)	326, 1614, 1777, 2143, 2226, 2853, 3000, 3246, 3349
Bst6I	CTCTTC	2 cut(s)	994, 2782
BstACI	GRCGYC	2 cut(s)	2479, 2536
BstAPI	GCANNNNNTGC	5 cut(s)	1016, 1340, 1520, 2735, 3076
BstAUI	TGTACA	1 cut(s)	2755
BstBI	TTCGAA	2 cut(s)	273, 348
BstC8I	GCNNGC	7 cut(s)	288, 477, 762, 1275, 2454, 2660, 2861
BstDSI	CCRYGG	2 cut(s)	36, 202
BstENI	CCTNNNNNAGG	1 cut(s)	3254
BstF5I	GGATG	8 cut(s)	73, 489, 694, 969, 1366, 1572, 2831, 3148
BstH2I	RGCGCY	1 cut(s)	1244
BstHHI	GCGC	1 cut(s)	1243
BstKTI	GATC	5 cut(s)	100, 229, 655, 1840, 2686
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	5 cut(s)	97, 226, 652, 1837, 2683
BstNI	CCWGG	7 cut(s)	1081, 1491, 1826, 1853, 2255, 2616, 2681
BstNSI	RCATGY	5 cut(s)	391, 768, 1277, 1607, 2863
BstPAI	GACNNNNGTC	1 cut(s)	2478
BstSCI	CCNGG	7 cut(s)	1079, 1489, 1824, 1851, 2253, 2614, 2679
BstSFI	CTRYAG	6 cut(s)	1254, 2019, 2142, 2371, 3086, 3389
BstSLI	GKGCMC	1 cut(s)	1117
BstV2I	GAAGAC	3 cut(s)	357, 2373, 2640
BstZ17I	GTATAC	1 cut(s)	738
Bsu15I	ATCGAT	1 cut(s)	2692
Bsu36I	CCTNAGG	1 cut(s)	2061
BsuRI	GGCC	2 cut(s)	1824, 2743
BsuTUI	ATCGAT	1 cut(s)	2692
BtgI	CCRYGG	2 cut(s)	36, 202
BtgZI	GCGATG	2 cut(s)	1152, 2190
BtsCI	GGATG	8 cut(s)	73, 489, 694, 969, 1366, 1572, 2831, 3148
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	5 cut(s)	100, 253, 1773, 2222, 2715
BveI	ACCTGC	1 cut(s)	2974
Cac8I	GCNNGC	7 cut(s)	288, 477, 762, 1275, 2454, 2660, 2861
CaiI	CAGNNNCTG	2 cut(s)	1340, 2920
CciI	TCATGA	2 cut(s)	655, 3376
CfoI	GCGC	1 cut(s)	1243
Cfr10I	RCCGGY	1 cut(s)	1057
Cfr13I	GGNCC	2 cut(s)	1849, 3313
ClaI	ATCGAT	1 cut(s)	2692
CseI	GACGC	3 cut(s)	1715, 2468, 3100
Csp6I	GTAC	7 cut(s)	436, 730, 789, 1607, 2756, 2849, 3211
CspCI	CAANNNNNGTGG	2 cut(s)	2211, 2246
CviQI	GTAC	7 cut(s)	436, 730, 789, 1607, 2756, 2849, 3211
DpnI	GATC	5 cut(s)	99, 228, 654, 1839, 2685
DpnII	GATC	5 cut(s)	97, 226, 652, 1837, 2683
DraI	TTTAAA	1 cut(s)	379
DrdI	GACNNNNNNGTC	2 cut(s)	1463, 3320
DseDI	GACNNNNNNGTC	2 cut(s)	1463, 3320
EaeI	YGGCCR	1 cut(s)	1822
Eam1104I	CTCTTC	2 cut(s)	994, 2782
EarI	CTCTTC	2 cut(s)	994, 2782
Ecl136II	GAGCTC	1 cut(s)	2658
Eco130I	CCWWGG	2 cut(s)	36, 202
Eco24I	GRGCYC	2 cut(s)	2070, 2660
Eco32I	GATATC	1 cut(s)	2696
Eco47I	GGWCC	2 cut(s)	1849, 3313
Eco47III	AGCGCT	1 cut(s)	1242
Eco53kI	GAGCTC	1 cut(s)	2658
Eco57I	CTGAAG	8 cut(s)	316, 618, 633, 2034, 2148, 2237, 2993, 3176
Eco81I	CCTNAGG	1 cut(s)	2061
EcoICRI	GAGCTC	1 cut(s)	2658
EcoNI	CCTNNNNNAGG	1 cut(s)	3254
EcoRII	CCWGG	7 cut(s)	1079, 1489, 1824, 1851, 2253, 2614, 2679
EcoRV	GATATC	1 cut(s)	2696
EcoT14I	CCWWGG	2 cut(s)	36, 202
EcoT22I	ATGCAT	3 cut(s)	1275, 1428, 2946
EcoT38I	GRGCYC	2 cut(s)	2070, 2660
ErhI	CCWWGG	2 cut(s)	36, 202
FalI	AAGNNNNNCTT	6 cut(s)	224, 256, 799, 831, 1621, 1653
FaqI	GGGAC	6 cut(s)	443, 620, 2547, 2809, 3232, 3308
FauI	CCCGC	3 cut(s)	245, 453, 3285
FbaI	TGATCA	2 cut(s)	97, 1837
FblI	GTMKAC	3 cut(s)	737, 1455, 2539
FokI	GGATG	8 cut(s)	80, 476, 701, 976, 1373, 1559, 2818, 3135
FriOI	GRGCYC	2 cut(s)	2070, 2660
FspBI	CTAG	6 cut(s)	773, 1244, 1397, 1683, 2342, 2624
GlaI	GCGC	1 cut(s)	1242
GsuI	CTGGAG	4 cut(s)	36, 1467, 1749, 1938
HaeII	RGCGCY	1 cut(s)	1244
HaeIII	GGCC	2 cut(s)	1824, 2743
HapII	CCGG	3 cut(s)	1058, 2270, 2496
HgaI	GACGC	3 cut(s)	1715, 2468, 3100
HhaI	GCGC	1 cut(s)	1243
Hin1I	GRCGYC	2 cut(s)	2479, 2536
Hin6I	GCGC	1 cut(s)	1241
HinP1I	GCGC	1 cut(s)	1241
HincII	GTYRAC	4 cut(s)	253, 1558, 1780, 2630
HindII	GTYRAC	4 cut(s)	253, 1558, 1780, 2630
HpaII	CCGG	3 cut(s)	1058, 2270, 2496
HphI	GGTGA	2 cut(s)	1072, 2483
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	6 cut(s)	560, 770, 1823, 1913, 2123, 2454
HpyCH4III	ACNGT	9 cut(s)	326, 1614, 1777, 2143, 2226, 2853, 3000, 3246, 3349
HpyCH4IV	ACGT	4 cut(s)	1198, 1844, 2536, 2847
HpySE526I	ACGT	4 cut(s)	1198, 1844, 2536, 2847
Hsp92I	GRCGYC	2 cut(s)	2479, 2536
HspAI	GCGC	1 cut(s)	1241
Kpn2I	TCCGGA	1 cut(s)	2269
Ksp22I	TGATCA	2 cut(s)	97, 1837
Kzo9I	GATC	5 cut(s)	97, 226, 652, 1837, 2683
LmnI	GCTCC	7 cut(s)	25, 1090, 1764, 2065, 2172, 2255, 3259
MaeI	CTAG	6 cut(s)	773, 1244, 1397, 1683, 2342, 2624
MaeII	ACGT	4 cut(s)	1198, 1844, 2536, 2847
MaeIII	GTNAC	2 cut(s)	326, 2471
MalI	GATC	5 cut(s)	99, 228, 654, 1839, 2685
MbiI	CCGCTC	1 cut(s)	196
MboI	GATC	5 cut(s)	97, 226, 652, 1837, 2683
MfeI	CAATTG	3 cut(s)	13, 2350, 3074
MhlI	GDGCHC	4 cut(s)	1117, 1761, 2070, 2660
MlsI	TGGCCA	1 cut(s)	1824
MluNI	TGGCCA	1 cut(s)	1824
MlyI	GAGTC	9 cut(s)	41, 50, 90, 167, 1451, 1591, 1739, 1826, 2245
MmeI	TCCRAC	5 cut(s)	45, 379, 831, 1827, 1920
Mox20I	TGGCCA	1 cut(s)	1824
Mph1103I	ATGCAT	3 cut(s)	1275, 1428, 2946
MroI	TCCGGA	1 cut(s)	2269
MroXI	GAANNNNTTC	1 cut(s)	1926
MscI	TGGCCA	1 cut(s)	1824
MseI	TTAA	4 cut(s)	378, 990, 1086, 2246
MslI	CAYNNNNRTG	3 cut(s)	1137, 1446, 2298
Msp20I	TGGCCA	1 cut(s)	1824
MspA1I	CMGCKG	5 cut(s)	460, 2405, 2456, 2920, 3292
MspI	CCGG	3 cut(s)	1058, 2270, 2496
MspR9I	CCNGG	7 cut(s)	1081, 1491, 1826, 1853, 2255, 2616, 2681
MunI	CAATTG	3 cut(s)	13, 2350, 3074
Mva1269I	GAATGC	2 cut(s)	862, 1516
MvaI	CCWGG	7 cut(s)	1081, 1491, 1826, 1853, 2255, 2616, 2681
NcoI	CCATGG	2 cut(s)	36, 202
NdeII	GATC	5 cut(s)	97, 226, 652, 1837, 2683
NlaIV	GGNNCC	5 cut(s)	27, 1114, 1570, 2067, 2730
NmeAIII	GCCGAG	1 cut(s)	1579
NmuCI	GTSAC	1 cut(s)	2471
NsiI	ATGCAT	3 cut(s)	1275, 1428, 2946
NspI	RCATGY	5 cut(s)	391, 768, 1277, 1607, 2863
NspV	TTCGAA	2 cut(s)	273, 348
OliI	CACNNNNGTG	1 cut(s)	2298
PaeI	GCATGC	2 cut(s)	1277, 2863
PagI	TCATGA	2 cut(s)	655, 3376
PcsI	WCGNNNNNNNCGW	1 cut(s)	1606
PctI	GAATGC	2 cut(s)	862, 1516
PdmI	GAANNNNTTC	1 cut(s)	1926
PflMI	CCANNNNNTGG	1 cut(s)	2615
PleI	GAGTC	9 cut(s)	41, 49, 89, 167, 1451, 1591, 1739, 1825, 2244
PpsI	GAGTC	9 cut(s)	41, 49, 89, 167, 1451, 1591, 1739, 1825, 2244
PshAI	GACNNNNGTC	1 cut(s)	2478
Psp124BI	GAGCTC	1 cut(s)	2660
Psp6I	CCWGG	7 cut(s)	1079, 1489, 1824, 1851, 2253, 2614, 2679
PspGI	CCWGG	7 cut(s)	1079, 1489, 1824, 1851, 2253, 2614, 2679
PspN4I	GGNNCC	5 cut(s)	27, 1114, 1570, 2067, 2730
PspPI	GGNCC	2 cut(s)	1849, 3313
PsrI	GAACNNNNNNTAC	2 cut(s)	1825, 1857
PstI	CTGCAG	2 cut(s)	1258, 3393
PstNI	CAGNNNCTG	2 cut(s)	1340, 2920
PvuII	CAGCTG	3 cut(s)	2405, 2456, 2920
RsaI	GTAC	7 cut(s)	437, 731, 790, 1608, 2757, 2850, 3212
RsaNI	GTAC	7 cut(s)	436, 730, 789, 1607, 2756, 2849, 3211
RseI	CAYNNNNRTG	3 cut(s)	1137, 1446, 2298
SacI	GAGCTC	1 cut(s)	2660
SaqAI	TTAA	4 cut(s)	378, 990, 1086, 2246
Sau3AI	GATC	5 cut(s)	97, 226, 652, 1837, 2683
Sau96I	GGNCC	2 cut(s)	1849, 3313
ScaI	AGTACT	1 cut(s)	731
SchI	GAGTC	9 cut(s)	41, 50, 90, 167, 1451, 1591, 1739, 1826, 2245
ScrFI	CCNGG	7 cut(s)	1081, 1491, 1826, 1853, 2255, 2616, 2681
SduI	GDGCHC	4 cut(s)	1117, 1761, 2070, 2660
SfcI	CTRYAG	6 cut(s)	1254, 2019, 2142, 2371, 3086, 3389
SfuI	TTCGAA	2 cut(s)	273, 348
SinI	GGWCC	2 cut(s)	1849, 3313
SmiMI	CAYNNNNRTG	3 cut(s)	1137, 1446, 2298
SmlI	CTYRAG	2 cut(s)	1880, 2310
SmoI	CTYRAG	2 cut(s)	1880, 2310
SphI	GCATGC	2 cut(s)	1277, 2863
SspI	AATATT	1 cut(s)	3032
SspMI	CTAG	6 cut(s)	773, 1244, 1397, 1683, 2342, 2624
SstI	GAGCTC	1 cut(s)	2660
StyD4I	CCNGG	7 cut(s)	1079, 1489, 1824, 1851, 2253, 2614, 2679
StyI	CCWWGG	2 cut(s)	36, 202
TaaI	ACNGT	9 cut(s)	326, 1614, 1777, 2143, 2226, 2853, 3000, 3246, 3349
TaiI	ACGT	4 cut(s)	1201, 1847, 2539, 2850
TaqI	TCGA	8 cut(s)	90, 150, 273, 348, 1306, 1815, 2185, 2692
TaqII	GACCGA	1 cut(s)	1041
TatI	WGTACW	4 cut(s)	435, 729, 2755, 3210
TauI	GCSGC	3 cut(s)	2971, 3133, 3160
Tru1I	TTAA	4 cut(s)	378, 990, 1086, 2246
Tru9I	TTAA	4 cut(s)	378, 990, 1086, 2246
TscAI	CASTG	5 cut(s)	107, 253, 1780, 2229, 2722
TseFI	GTSAC	1 cut(s)	2471
Tsp45I	GTSAC	1 cut(s)	2471
TspGWI	ACGGA	6 cut(s)	51, 665, 1008, 1954, 2824, 3349
TspRI	CASTG	5 cut(s)	107, 253, 1780, 2229, 2722
Van91I	CCANNNNNTGG	1 cut(s)	2615
VpaK11BI	GGWCC	2 cut(s)	1849, 3313
XagI	CCTNNNNNAGG	1 cut(s)	3254
XapI	RAATTY	7 cut(s)	1038, 1411, 1959, 2519, 2664, 3135, 3162
XbaI	TCTAGA	1 cut(s)	1396
XceI	RCATGY	5 cut(s)	391, 768, 1277, 1607, 2863
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2722
XmiI	GTMKAC	3 cut(s)	737, 1455, 2539
XmnI	GAANNNNTTC	1 cut(s)	1926
XspI	CTAG	6 cut(s)	773, 1244, 1397, 1683, 2342, 2624
ZraI	GACGTC	1 cut(s)	2537
ZrmI	AGTACT	1 cut(s)	731
Zsp2I	ATGCAT	3 cut(s)	1275, 1428, 2946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.