Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005841

Physical Location & Seq

Genomic Coordinates Reverse (-)

8743607 .. 8751106

Gene Structure 7500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG096600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3639 bp

ATGAGTTTGAGCTGCAATTCTGTACCAGAGGCTGAGCCCATGGAACCAGAGACTCCAGATGAAATTCGCCGAGCTTCGCTGGACTTCGATCACTGGACCTCACTCATTTCGCAGATAGAGAATTCCTATCCTGATGACATAGAGAAAATATGCTCAGTGTATGATTCTTTCTTGGCCGAGTTTCCGTTGTGCCATGGATATTGGAGGAGGTATGCTGAGCATAAGATGCGTTTGTGCTCCATTGACAAGGTTGTTGAGGTCTTTGAACGAGCTCTGCAAGCTGCAACCTACTGTGTCCCGCTGTGGGTGGACTACTGTGTCTTCAGTATGTCCTTTTTCGAAGATCCTTCCGATATTCGCAGACTATTTAAAAGAGGGATGTCCTTTGTTCGAAAGGACTATGGGTGCTATACTTTGTGGGACAAATACATTGAATTTGAGTACTCTCAGCAGGAATGGAGTTCACTGGCCCTGATTTACATCCAAGCTCTTAGATTCCCTACCAAGAAGTTGCATATTTATTATGCGAGTTTGAAGAAGTTGGCTACCTTGTTTGAAGAGGAGATGAAAAGCCAGAGTAATTCTACTGTGGATTTGCAGTTAGAAGCTTTATTTGATGGTGAAGTCCCTAGGTTTTTTGGAGATGATGAAATTTCTCTTGTAGTCAAAGACCTTCTGGATCCAGCAATTGGCTCAGGAAGGTCTAAAGCACTGCAAAGATACATATGTATTGGGAAACAGTTGTATCACGAAGCATGCCAGCTTGATGAAAAGATTGGTACTTTTGAGATTAATATAAGGAGGTCTTACTTCCATGTAAAGGAGCTTGATGCGGGTCAGTTGGAGAATTGGCATCGCTATCTGGACTATGTTGAGATGCAAGGGGATTTTGATTGGGCAGTGAAGCTTTACGAGAGGTGCTTGATTCCCTGTGCTAATTACCCCGAGTTTTGGATGCGTTATGTGGATTTCGTGGAAATCAATGGAGGAAGAGAAATTGCAAACTATTCTCTTGACCGAGCAACCCAAATATTTGTGAAGAGAGTGTCGGTGATTCATCTTTTGAATGCCAAGTTTAAGGAGCAAATAGGAGATGTACTTGGTGCCCGTGCGGCTCTTCTTCAATGTAATGCAGAGTCAGATACACACTTCGTTAAGAATGTTATCTTAAAGGCTAATATGGAAAAACGTTTGGGAAATTTCACAGCAGCTTCCACTATATTCAGAGAAGCTCTAGCAATGGCTGCAGAGAAGAAACAGTCGCATACTCTTCCTATTCTATATGTTCATTTCTCTCGCCTTACATTCATGATGACTGATAGTGCAGATGCTGCACGAGATGTCTTGATAGATGGCATCAAACAATTGCCTCACTGCAAAGTACTTCTAGAGGAGTTGATAAAGTTTGCAATGATGAATGGAGGGAAGCAGCACATAAATGTGATAGACTCTGTTGTAACCCGTGCTATATCTCAGGAATCAGGAGTATGCAATGGTCTGAATGCAAAAGATGCTGAGGATATTTCAAGCTTATTTTTAGAGTTTGTTGACCTCTGTGGAACCATCCATGAAGTAAGAAAGGTGTGGACTCGGCATGTACGATTGTTCCCTTCTTCCATTAGGCCATCTTCCTTGGGTCAGCAGTCTGCCTTTAATGTTTATGATCAGCAAGCTACATTCACAAAGTCTTTGAATTTGTCTAGAGAAAAAGAGGAAACTTCTGCTGCTATGACTCAGCAGCCATCTAGAGATTGTACTTCTGACTCCATGATTGAGCTCCCGTTGCATGATGAAGAAATGTTATTGCCAGAAAATCATACTAAAGAGTGTGGCCAGGATCCCGCATACCAGCTATCAGACCAGACATTGCCATCAAAACAATTTGAAAATCTACAGGAAAGATTGCAGCTAACATCTCCGGAAGTTTCAAGAGAGCAGTCCCCAGCTAATGCACCAGAAGCATATATATCCTCCACCGTGGTAGAACTGAATCTGGTATCTCAGGAAGTATCTGACGAGGCCCCAGAAAATGCCCCTGTAGCAGAAGTGAAACAGGTATCCCGGGAAGTTTCTGAAGAGGCTACAGAAAATACCCATATAGCAGACGTGAAAAAGGTATCTCGGGAAGTTTCTGAGGAGCCCACAGAAAATATCCTTGTAGTAGAAGAGAAAAAAGTATCTCAGGAAGTTTCCGAGGAGGCGAGAGAAAACATCCCTAAACCAAAGATGTTGTCTGTAGAATTAGGATTTCAAGTTGCTGAAGGAAATGATTCTATAGAATCTTCACAAGAAAACACCATGGGAAGCAATGCTGATCGAGAGTGTGACTATAAGAGTGAACAAGACCCAAAGCCACTGTCCTTGGAGAGTCTTTCTTTGAATTCCCAGGAAAATACAAATTTGGATTTAGTATCCTGCACTTCTCCCAAGTCTGAAGCTTCTCCAGAAACCTGTACTTCAAATGGAAAGAAGCTAGAGAGTGATTGCAACTCTGATCAAGACTCTTATATGCACAACCCACGAAATGATAGATCGTTAGAATCAGCTGGAAATGAATTAGTCAATGCTATGCCTATCCCGGTGTTTTCTCAGCCGCCTGCAAATAGTTATGGAGACTGGAGTCAAATTAATCGTTCTGATAAAGTTGGTAAAGATTCCAAATTGGGCTTTCGGATGCAGTTACAAAGAAAATCACATCCACAGCAGCATGTTCCTCCACAGAAATACCCGCGAACTGAAGCAGGTCATCCAATGCCTGCGAGTCAAGGTCACCCCTCTATATTAGCACCTTCACAAAACCAACAAATTCAGCAAGGCAGCCAGCAGGCCCAGCATCACAATCAGTATCAGGTAGCAAGTGGTCATGCTAATATAGCAGCACCTAATTCCGGGCCTATACCAAATGTACAAGCCGCCAATGATGCCTCTTCATCTCAGTCTCTATTGCCTGTCCAACCTGTTGCTCCACAGATGCCTCAGTCATCAGTATTAGGCAATGGGCAGTATGCGATGCAGAATCCTCAAGCATATAATCAGATGTGGCAATATTATTACTACCAGCAGCAGCAATCCCTTCTGCAACCACAGCAGCATCATCCCCAGCAGCAGCAGCAGTTGTTATTGCAACAGTATCAGCAGCAGCAGCAACTTCAACAATATTATGTTCAGATGCAACAGCAACAACTTCTTTTCCAACAACAGCAGCAAATTCAACTAACACAGCAACAACTTCCTTTGCAACAACAGCAACAACTTCCTTTGCAACAACAACAGCAATCTCAAGTACTAAAGCAGCTTCCTTTGCAAGAGCAGCAGCAATTTCAGCAACTACAGCAACAAATTCAGCAATTTCAACAACTGCAGCAACAACTTCCTGTGCAACAACAACAACAATTTCCGTCGCAACAACAATACAATCCGCAATTGCAATTACAACAACAGCATCCATTCTATGTGCATAAGCATCAACAGCCACTCCAACAACAATCACATCTACAGGAACAACATCAAATCAATCAGTCATCAATTCAGCAGAACTACTCACACCACCAGGATCAAGCACAAAATTCAGATATTCATGGTGGGACAGTCATATCCTCCTTATCTCCTCACAGCCCAGTAGAACCTCCCCAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1212

Amino Acids

138.6

Weight (kDa)

5.23

Isoelectric Point (pI)

69.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Suf	PF05843	20 - 146	3.5e-10	Suppressor of forked protein (Suf)
HAT_Syf1_CNRKL1_N	PF23233	20 - 160	1e-07	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_N	PF23240	21 - 179	9.2e-48	PRP39 N-terminal HAT repeat
HAT_PRP39_C	PF23241	258 - 397	3.3e-41	PRP39 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46400 AT5G46400 AT5G46400
fragaria_vesca	FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350
malus_domestica	MD10G1267400.v1.1
prunus_persica	Prupe.4G074100_v2.0.a1 Prupe.4G074100_v2.0.a1 Prupe.4G074100_v2.0.a1
pyrus_communis	pycom10g22340
rosa_chinensis	RchiOBHm_Chr5g0012961
rosa_laevigata	RLG00000031972
rosa_multiflora	Rmu_sc0006885.1_g000007 Rmu_sc0010837.1_g000003
rosa_roxburghii	Rroxscaffold_1G00063630
rosa_rugosa	Rorug05G0005500
rosa_samantha	Rh5AG099900 Rh5BG096600 Rh5CG108800 Rh5DG095300
rosa_wichuraiana	Rw5G008720 Rw5G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	317
Acc36I	ACCTGC	1 cut(s)	2732
AccB1I	GGYRCC	1 cut(s)	1103
AccB7I	CCANNNNNTGG	1 cut(s)	689
AccII	CGCG	1 cut(s)	2731
AccIII	TCCGGA	1 cut(s)	1918
AciI	CCGC	8 cut(s)	299, 833, 1112, 1842, 2594, 2729, 2913, 3419
AclI	AACGTT	1 cut(s)	1189
AclWI	GGATC	6 cut(s)	338, 674, 687, 1832, 1845, 3561
AcoI	YGGCCR	2 cut(s)	174, 1831
AcuI	CTGAAG	5 cut(s)	307, 2094, 2280, 2454, 2757
AfiI	CCNNNNNNNGG	5 cut(s)	304, 689, 820, 951, 2888
AjiI	CACGTC	1 cut(s)	2107
AjnI	CCWGG	3 cut(s)	1833, 2385, 3549
Alw21I	GWGCWC	3 cut(s)	239, 274, 1779
Alw26I	GTCTC	3 cut(s)	44, 2607, 2943
AlwI	GGATC	6 cut(s)	338, 674, 687, 1832, 1845, 3561
AlwNI	CAGNNNCTG	2 cut(s)	32, 1331
Ama87I	CYCGRG	3 cut(s)	944, 2061, 2121
Aor13HI	TCCGGA	1 cut(s)	1918
AoxI	GGCC	7 cut(s)	174, 468, 1622, 1831, 2019, 2826, 2891
ArsI	GACNNNNNNTTYG	4 cut(s)	2216, 2248, 2342, 2374
AseI	ATTAAT	2 cut(s)	792, 2628
Asp700I	GAANNNNTTC	1 cut(s)	2269
AspA2I	CCTAGG	1 cut(s)	629
AspS9I	GGNCC	5 cut(s)	96, 469, 2020, 2827, 2891
AsuC2I	CCSGG	4 cut(s)	2062, 2063, 2579, 2890
AsuHPI	GGTGA	3 cut(s)	632, 1063, 2762
AsuII	TTCGAA	2 cut(s)	339, 391
AvaI	CYCGRG	3 cut(s)	944, 2061, 2121
AvaII	GGWCC	1 cut(s)	96
AvrII	CCTAGG	1 cut(s)	629
BaeGI	GKGCMC	1 cut(s)	1108
BaeI	ACNNNNGTAYC	4 cut(s)	712, 728, 745, 761
BalI	TGGCCA	1 cut(s)	1833
BamHI	GGATCC	2 cut(s)	679, 1837
BanI	GGYRCC	1 cut(s)	1103
BanII	GRGCYC	4 cut(s)	39, 274, 1779, 2142
BauI	CACGAG	1 cut(s)	1335
BbsI	GAAGAC	1 cut(s)	313
Bbv12I	GWGCWC	3 cut(s)	239, 274, 1779
BbvCI	CCTCAGC	1 cut(s)	1515
BccI	CCATC	6 cut(s)	611, 1346, 1571, 1633, 1750, 1879
BciT130I	CCWGG	3 cut(s)	1835, 2387, 3551
BciVI	GTATCC	2 cut(s)	2068, 2422
BclI	TGATCA	2 cut(s)	1663, 2494
BcnI	CCSGG	4 cut(s)	2062, 2063, 2579, 2890
BcoDI	GTCTC	3 cut(s)	44, 2607, 2943
BfaI	CTAG	6 cut(s)	630, 1235, 1388, 1701, 1746, 2474
BfmI	CTRYAG	9 cut(s)	1245, 1892, 2037, 2082, 2235, 2274, 3329, 3359, 3494
BfuAI	ACCTGC	1 cut(s)	2732
BfuI	GTATCC	2 cut(s)	2068, 2422
BglI	GCCNNNNNGGC	1 cut(s)	1112
BlnI	CCTAGG	1 cut(s)	629
BlpI	GCTNAGC	2 cut(s)	33, 216
BmcAI	AGTACT	3 cut(s)	443, 1383, 3285
Bme1390I	CCNGG	7 cut(s)	1835, 2062, 2063, 2387, 2579, 2890, 3551
Bme18I	GGWCC	1 cut(s)	96
BmeT110I	CYCGRG	3 cut(s)	944, 2061, 2121
BmgBI	CACGTC	1 cut(s)	2107
BmgT120I	GGNCC	5 cut(s)	96, 469, 2020, 2827, 2891
BmiI	GGNNCC	7 cut(s)	45, 681, 1105, 1561, 1839, 2022, 2139
BmrFI	CCNGG	7 cut(s)	1835, 2062, 2063, 2387, 2579, 2890, 3551
BmrI	ACTGGG	1 cut(s)	3611
BmuI	ACTGGG	1 cut(s)	3611
BoxI	GACNNNNGTC	1 cut(s)	2619
BpiI	GAAGAC	1 cut(s)	313
BpmI	CTGGAG	3 cut(s)	39, 2427, 2638
Bpu10I	CCTNAGC	2 cut(s)	694, 1515
Bpu1102I	GCTNAGC	2 cut(s)	33, 216
Bpu14I	TTCGAA	2 cut(s)	339, 391
BpuEI	CTTGAG	2 cut(s)	3006, 3264
BpuMI	CCSGG	4 cut(s)	2062, 2063, 2579, 2890
BsaBI	GATNNNNATC	1 cut(s)	479
BsaWI	WCCGGW	1 cut(s)	1918
BsaXI	ACNNNNNCTCC	2 cut(s)	3459, 3489
Bsc4I	CCNNNNNNNGG	5 cut(s)	304, 689, 820, 951, 2888
Bse1I	ACTGG	4 cut(s)	98, 471, 2621, 3617
Bse3DI	GCAATG	6 cut(s)	1245, 1416, 1498, 1865, 2314, 3001
Bse8I	GATNNNNATC	1 cut(s)	479
BseAI	TCCGGA	1 cut(s)	1918
BseBI	CCWGG	3 cut(s)	1835, 2387, 3551
BseJI	GATNNNNATC	1 cut(s)	479
BseLI	CCNNNNNNNGG	5 cut(s)	304, 689, 820, 951, 2888
BseMI	GCAATG	6 cut(s)	1245, 1416, 1498, 1865, 2314, 3001
BseNI	ACTGG	4 cut(s)	98, 471, 2621, 3617
BseRI	GAGGAG	6 cut(s)	220, 575, 1406, 2150, 2210, 3597
BseSI	GKGCMC	1 cut(s)	1108
BseYI	CCCAGC	3 cut(s)	1942, 2829, 3099
BsgI	GTGCAG	3 cut(s)	1317, 1344, 2401
Bsh1236I	CGCG	1 cut(s)	2731
BshFI	GGCC	7 cut(s)	176, 470, 1624, 1833, 2021, 2828, 2893
BshNI	GGYRCC	1 cut(s)	1103
BsiHKAI	GWGCWC	3 cut(s)	239, 274, 1779
BsiHKCI	CYCGRG	3 cut(s)	944, 2061, 2121
BsiSI	CCGG	4 cut(s)	1919, 2062, 2579, 2889
BslFI	GGGAC	5 cut(s)	281, 434, 611, 1924, 3598
BslI	CCNNNNNNNGG	5 cut(s)	304, 689, 820, 951, 2888
BsmAI	GTCTC	3 cut(s)	44, 2607, 2943
BsmFI	GGGAC	5 cut(s)	281, 434, 611, 1924, 3598
BsmI	GAATGC	2 cut(s)	1072, 1507
BsnI	GGCC	7 cut(s)	176, 470, 1624, 1833, 2021, 2828, 2893
BsoBI	CYCGRG	3 cut(s)	944, 2061, 2121
Bsp119I	TTCGAA	2 cut(s)	339, 391
Bsp1286I	GDGCHC	6 cut(s)	39, 239, 274, 1108, 1779, 2142
Bsp13I	TCCGGA	1 cut(s)	1918
Bsp1407I	TGTACA	1 cut(s)	2905
Bsp143I	GATC	9 cut(s)	88, 343, 679, 1663, 1837, 2314, 2494, 2531, 3553
Bsp1720I	GCTNAGC	2 cut(s)	33, 216
Bsp19I	CCATGG	3 cut(s)	39, 193, 2298
BspACI	CCGC	8 cut(s)	299, 833, 1112, 1842, 2594, 2729, 2913, 3419
BspANI	GGCC	7 cut(s)	176, 470, 1624, 1833, 2021, 2828, 2893
BspEI	TCCGGA	1 cut(s)	1918
BspFNI	CGCG	1 cut(s)	2731
BspHI	TCATGA	1 cut(s)	1308
BspLI	GGNNCC	7 cut(s)	45, 681, 1105, 1561, 1839, 2022, 2139
BspMAI	CTGCAG	2 cut(s)	1249, 3363
BspMI	ACCTGC	1 cut(s)	2732
BspPI	GGATC	6 cut(s)	338, 674, 687, 1832, 1845, 3561
BspQI	GCTCTTC	1 cut(s)	1122
BspT104I	TTCGAA	2 cut(s)	339, 391
BspT107I	GGYRCC	1 cut(s)	1103
BsrDI	GCAATG	6 cut(s)	1245, 1416, 1498, 1865, 2314, 3001
BsrGI	TGTACA	1 cut(s)	2905
BsrI	ACTGG	4 cut(s)	98, 471, 2621, 3617
BssMI	GATC	9 cut(s)	88, 343, 679, 1663, 1837, 2314, 2494, 2531, 3553
BssSI	CACGAG	1 cut(s)	1335
BssT1I	CCWWGG	6 cut(s)	39, 193, 629, 1632, 2298, 2361
Bst2BI	CACGAG	1 cut(s)	1335
Bst2UI	CCWGG	3 cut(s)	1835, 2387, 3551
Bst4CI	ACNGT	9 cut(s)	293, 317, 589, 741, 1260, 1978, 2358, 3129, 3589
Bst6I	CTCTTC	8 cut(s)	552, 985, 1034, 1122, 1275, 2070, 2160, 2932
BstAPI	GCANNNNNTGC	4 cut(s)	226, 1244, 1331, 1511
BstAUI	TGTACA	1 cut(s)	2905
BstBI	TTCGAA	2 cut(s)	339, 391
BstC8I	GCNNGC	8 cut(s)	279, 757, 761, 1671, 2598, 2757, 2822, 2826
BstDSI	CCRYGG	4 cut(s)	39, 193, 1977, 2298
BstEII	GGTNACC	1 cut(s)	2768
BstFNI	CGCG	1 cut(s)	2731
BstKTI	GATC	9 cut(s)	91, 346, 682, 1666, 1840, 2317, 2497, 2534, 3556
BstMAI	GTCTC	3 cut(s)	44, 2607, 2943
BstMBI	GATC	9 cut(s)	88, 343, 679, 1663, 1837, 2314, 2494, 2531, 3553
BstNI	CCWGG	3 cut(s)	1835, 2387, 3551
BstNSI	RCATGY	3 cut(s)	759, 1598, 2711
BstPAI	GACNNNNGTC	1 cut(s)	2619
BstPI	GGTNACC	1 cut(s)	2768
BstSCI	CCNGG	7 cut(s)	1833, 2060, 2061, 2385, 2577, 2888, 3549
BstSFI	CTRYAG	9 cut(s)	1245, 1892, 2037, 2082, 2235, 2274, 3329, 3359, 3494
BstSLI	GKGCMC	1 cut(s)	1108
BstUI	CGCG	1 cut(s)	2731
BstV2I	GAAGAC	1 cut(s)	313
BstX2I	RGATCY	3 cut(s)	343, 679, 1837
BstYI	RGATCY	3 cut(s)	343, 679, 1837
BsuI	GTATCC	2 cut(s)	2068, 2422
BsuRI	GGCC	7 cut(s)	176, 470, 1624, 1833, 2021, 2828, 2893
BtgI	CCRYGG	4 cut(s)	39, 193, 1977, 2298
BtgZI	GCGATG	2 cut(s)	839, 3023
BtrI	CACGTC	1 cut(s)	2107
BtsI	GCAGTG	3 cut(s)	710, 906, 1372
BtsIMutI	CAGTG	7 cut(s)	91, 162, 464, 710, 906, 1372, 2354
BveI	ACCTGC	1 cut(s)	2732
Cac8I	GCNNGC	8 cut(s)	279, 757, 761, 1671, 2598, 2757, 2822, 2826
CaiI	CAGNNNCTG	2 cut(s)	32, 1331
CciI	TCATGA	1 cut(s)	1308
Cfr13I	GGNCC	5 cut(s)	96, 469, 2020, 2827, 2891
Cfr9I	CCCGGG	1 cut(s)	2061
CspCI	CAANNNNNGTGG	2 cut(s)	2343, 2378
DpnI	GATC	9 cut(s)	90, 345, 681, 1665, 1839, 2316, 2496, 2533, 3555
DpnII	GATC	9 cut(s)	88, 343, 679, 1663, 1837, 2314, 2494, 2531, 3553
DraI	TTTAAA	1 cut(s)	370
DrdI	GACNNNNNNGTC	1 cut(s)	317
DseDI	GACNNNNNNGTC	1 cut(s)	317
EaeI	YGGCCR	2 cut(s)	174, 1831
Eam1104I	CTCTTC	8 cut(s)	552, 985, 1034, 1122, 1275, 2070, 2160, 2932
EarI	CTCTTC	8 cut(s)	552, 985, 1034, 1122, 1275, 2070, 2160, 2932
Ecl136II	GAGCTC	2 cut(s)	272, 1777
Eco130I	CCWWGG	6 cut(s)	39, 193, 629, 1632, 2298, 2361
Eco24I	GRGCYC	4 cut(s)	39, 274, 1779, 2142
Eco47I	GGWCC	1 cut(s)	96
Eco53kI	GAGCTC	2 cut(s)	272, 1777
Eco57I	CTGAAG	5 cut(s)	307, 2094, 2280, 2454, 2757
Eco88I	CYCGRG	3 cut(s)	944, 2061, 2121
Eco91I	GGTNACC	1 cut(s)	2768
EcoICRI	GAGCTC	2 cut(s)	272, 1777
EcoO109I	RGGNCCY	1 cut(s)	2020
EcoO65I	GGTNACC	1 cut(s)	2768
EcoRI	GAATTC	2 cut(s)	121, 2380
EcoRII	CCWGG	3 cut(s)	1833, 2385, 3549
EcoT14I	CCWWGG	6 cut(s)	39, 193, 629, 1632, 2298, 2361
EcoT38I	GRGCYC	4 cut(s)	39, 274, 1779, 2142
ErhI	CCWWGG	6 cut(s)	39, 193, 629, 1632, 2298, 2361
FalI	AAGNNNNNCTT	2 cut(s)	790, 822
FaqI	GGGAC	5 cut(s)	281, 434, 611, 1924, 3598
FauI	CCCGC	4 cut(s)	306, 826, 1849, 2736
FauNDI	CATATG	1 cut(s)	725
FbaI	TGATCA	2 cut(s)	1663, 2494
FriOI	GRGCYC	4 cut(s)	39, 274, 1779, 2142
FspBI	CTAG	6 cut(s)	630, 1235, 1388, 1701, 1746, 2474
GsaI	CCCAGC	3 cut(s)	1946, 2833, 3103
GsuI	CTGGAG	3 cut(s)	39, 2427, 2638
HaeIII	GGCC	7 cut(s)	176, 470, 1624, 1833, 2021, 2828, 2893
HapII	CCGG	4 cut(s)	1919, 2062, 2579, 2889
HincII	GTYRAC	1 cut(s)	1549
HindII	GTYRAC	1 cut(s)	1549
HindIII	AAGCTT	4 cut(s)	606, 905, 1528, 2436
HpaII	CCGG	4 cut(s)	1919, 2062, 2579, 2889
HphI	GGTGA	3 cut(s)	632, 1063, 2762
Hpy166II	GTNNAC	5 cut(s)	310, 464, 1549, 1587, 2339
Hpy8I	GTNNAC	5 cut(s)	310, 464, 1549, 1587, 2339
Hpy99I	CGWCG	1 cut(s)	3403
HpyAV	CCTTC	7 cut(s)	357, 683, 693, 1620, 2255, 2799, 3083
HpyCH4III	ACNGT	9 cut(s)	293, 317, 589, 741, 1260, 1978, 2358, 3129, 3589
HpyCH4IV	ACGT	2 cut(s)	1189, 2106
HpySE526I	ACGT	2 cut(s)	1189, 2106
Kpn2I	TCCGGA	1 cut(s)	1918
Ksp22I	TGATCA	2 cut(s)	1663, 2494
Kzo9I	GATC	9 cut(s)	88, 343, 679, 1663, 1837, 2314, 2494, 2531, 3553
LguI	GCTCTTC	1 cut(s)	1122
LmnI	GCTCC	6 cut(s)	242, 823, 1081, 1782, 2137, 2968
MaeI	CTAG	6 cut(s)	630, 1235, 1388, 1701, 1746, 2474
MaeII	ACGT	2 cut(s)	1189, 2106
MaeIII	GTNAC	4 cut(s)	1456, 2324, 2679, 2768
MalI	GATC	9 cut(s)	90, 345, 681, 1665, 1839, 2316, 2496, 2533, 3555
MboI	GATC	9 cut(s)	88, 343, 679, 1663, 1837, 2314, 2494, 2531, 3553
MfeI	CAATTG	3 cut(s)	687, 1364, 3422
MflI	RGATCY	3 cut(s)	343, 679, 1837
MhlI	GDGCHC	6 cut(s)	39, 239, 274, 1108, 1779, 2142
MlsI	TGGCCA	1 cut(s)	1833
MluNI	TGGCCA	1 cut(s)	1833
MmeI	TCCRAC	4 cut(s)	822, 2977, 3217, 3502
Mox20I	TGGCCA	1 cut(s)	1833
MroI	TCCGGA	1 cut(s)	1918
MroXI	GAANNNNTTC	1 cut(s)	2269
MscI	TGGCCA	1 cut(s)	1833
MseI	TTAA	7 cut(s)	369, 792, 1077, 1155, 1169, 1653, 2628
MslI	CAYNNNNRTG	2 cut(s)	1437, 1439
Msp20I	TGGCCA	1 cut(s)	1833
MspA1I	CMGCKG	2 cut(s)	301, 2546
MspI	CCGG	4 cut(s)	1919, 2062, 2579, 2889
MspR9I	CCNGG	7 cut(s)	1835, 2062, 2063, 2387, 2579, 2890, 3551
MunI	CAATTG	3 cut(s)	687, 1364, 3422
Mva1269I	GAATGC	2 cut(s)	1072, 1507
MvaI	CCWGG	3 cut(s)	1835, 2387, 3551
MvnI	CGCG	1 cut(s)	2731
NciI	CCSGG	4 cut(s)	2062, 2063, 2579, 2890
NcoI	CCATGG	3 cut(s)	39, 193, 2298
NdeI	CATATG	1 cut(s)	725
NdeII	GATC	9 cut(s)	88, 343, 679, 1663, 1837, 2314, 2494, 2531, 3553
NlaIV	GGNNCC	7 cut(s)	45, 681, 1105, 1561, 1839, 2022, 2139
NmeAIII	GCCGAG	3 cut(s)	95, 202, 1570
NmuCI	GTSAC	2 cut(s)	2324, 2768
NspI	RCATGY	3 cut(s)	759, 1598, 2711
NspV	TTCGAA	2 cut(s)	339, 391
PaeI	GCATGC	1 cut(s)	759
PagI	TCATGA	1 cut(s)	1308
PciSI	GCTCTTC	1 cut(s)	1122
PcsI	WCGNNNNNNNCGW	1 cut(s)	1597
PctI	GAATGC	2 cut(s)	1072, 1507
PdmI	GAANNNNTTC	1 cut(s)	2269
PflMI	CCANNNNNTGG	1 cut(s)	689
PshAI	GACNNNNGTC	1 cut(s)	2619
PshBI	ATTAAT	2 cut(s)	792, 2628
Psp124BI	GAGCTC	2 cut(s)	274, 1779
Psp1406I	AACGTT	1 cut(s)	1189
Psp6I	CCWGG	3 cut(s)	1833, 2385, 3549
PspEI	GGTNACC	1 cut(s)	2768
PspFI	CCCAGC	3 cut(s)	1942, 2829, 3099
PspGI	CCWGG	3 cut(s)	1833, 2385, 3549
PspN4I	GGNNCC	7 cut(s)	45, 681, 1105, 1561, 1839, 2022, 2139
PspPI	GGNCC	5 cut(s)	96, 469, 2020, 2827, 2891
PstI	CTGCAG	2 cut(s)	1249, 3363
PstNI	CAGNNNCTG	2 cut(s)	32, 1331
PsuI	RGATCY	3 cut(s)	343, 679, 1837
PvuII	CAGCTG	1 cut(s)	2546
RseI	CAYNNNNRTG	2 cut(s)	1437, 1439
SacI	GAGCTC	2 cut(s)	274, 1779
SapI	GCTCTTC	1 cut(s)	1122
SaqAI	TTAA	7 cut(s)	369, 792, 1077, 1155, 1169, 1653, 2628
Sau3AI	GATC	9 cut(s)	88, 343, 679, 1663, 1837, 2314, 2494, 2531, 3553
Sau96I	GGNCC	5 cut(s)	96, 469, 2020, 2827, 2891
ScaI	AGTACT	3 cut(s)	443, 1383, 3285
ScrFI	CCNGG	7 cut(s)	1835, 2062, 2063, 2387, 2579, 2890, 3551
SduI	GDGCHC	6 cut(s)	39, 239, 274, 1108, 1779, 2142
SfcI	CTRYAG	9 cut(s)	1245, 1892, 2037, 2082, 2235, 2274, 3329, 3359, 3494
SfuI	TTCGAA	2 cut(s)	339, 391
SinI	GGWCC	1 cut(s)	96
SmaI	CCCGGG	1 cut(s)	2063
SmiMI	CAYNNNNRTG	2 cut(s)	1437, 1439
SmlI	CTYRAG	2 cut(s)	3021, 3279
SmoI	CTYRAG	2 cut(s)	3021, 3279
SphI	GCATGC	1 cut(s)	759
SsiI	CCGC	8 cut(s)	299, 833, 1112, 1842, 2594, 2729, 2913, 3419
SspI	AATATT	3 cut(s)	1032, 3047, 3158
SspMI	CTAG	6 cut(s)	630, 1235, 1388, 1701, 1746, 2474
SstI	GAGCTC	2 cut(s)	274, 1779
StyD4I	CCNGG	7 cut(s)	1833, 2060, 2061, 2385, 2577, 2888, 3549
StyI	CCWWGG	6 cut(s)	39, 193, 629, 1632, 2298, 2361
TaaI	ACNGT	9 cut(s)	293, 317, 589, 741, 1260, 1978, 2358, 3129, 3589
TaiI	ACGT	2 cut(s)	1192, 2109
TaqI	TCGA	4 cut(s)	87, 339, 391, 2317
TaqII	GACCGA	1 cut(s)	1032
TatI	WGTACW	7 cut(s)	441, 1096, 1381, 1754, 2453, 2905, 3283
TauI	GCSGC	3 cut(s)	1115, 2596, 2915
Tru1I	TTAA	7 cut(s)	369, 792, 1077, 1155, 1169, 1653, 2628
Tru9I	TTAA	7 cut(s)	369, 792, 1077, 1155, 1169, 1653, 2628
TscAI	CASTG	7 cut(s)	98, 162, 471, 717, 906, 1379, 2361
TseFI	GTSAC	2 cut(s)	2324, 2768
Tsp45I	GTSAC	2 cut(s)	2324, 2768
TspGWI	ACGGA	2 cut(s)	174, 3387
TspMI	CCCGGG	1 cut(s)	2061
TspRI	CASTG	7 cut(s)	98, 162, 471, 717, 906, 1379, 2361
Van91I	CCANNNNNTGG	1 cut(s)	689
VpaK11BI	GGWCC	1 cut(s)	96
VspI	ATTAAT	2 cut(s)	792, 2628
XbaI	TCTAGA	3 cut(s)	1387, 1700, 1745
XceI	RCATGY	3 cut(s)	759, 1598, 2711
XmaI	CCCGGG	1 cut(s)	2061
XmaJI	CCTAGG	1 cut(s)	629
XmnI	GAANNNNTTC	1 cut(s)	2269
XspI	CTAG	6 cut(s)	630, 1235, 1388, 1701, 1746, 2474
ZrmI	AGTACT	3 cut(s)	443, 1383, 3285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.