FvH4_3g12891

zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008851
Physical Location & Seq
Forward (+)
7705784 .. 7708179
2396 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12891.t2

Sequence Viewer

Length: 1032 bp
ATGAGAAAGTTTCAATCTTATTCCAACACTATCTTCTTCCTCATTCTTCTACCTGTTTTAGTATCTTCGACCTGCACATGTACTCGAAAGCAAGACGAAGATCGAAACCAATCCAAGCAACTGATCACATACAAACTAGTTGCAATCGTTTCAGTTCTGGTTTCTGGTGCCCTAGGAGTCTGCCTTCCATTTTTAGTGAAGGTTAACATACCATTTCTCCATCCTGATAACGACTTCTATCTTCTTATCAAGGCCTTTGCAGCAGGAGTGATTTTAGCGACTAGCTTTGTTCATGTGCTTCCTGATGCTCAGGAGAGTCTGACAAGCCCTTGCCTCAGTCAAAAGCCATGGGGTAAGTTCCCGTTCACTGGTTTTGTTGCTATGGTTTCGGCCATTGGGACATTGATGATGGAAGCTTTGGCTACTGGGTACAACAAGAGGTCTGCTCTTAGCAAACCTCAACCAATAGATGGTGATGAAGAGACAAATCAGGTTCATGGTTCTGCATTGGTGTTAGAACCATCAAATTCGTCGGACACGATCCGAAATCGTATCATATCTCAGGTTTTGGAGTTGGGAATTATTGTCCATTCGGTGATTATTGGGGTATCCCTCGGTGCGTGTCAAAAGCTACACACAATCAAGCCTTTGGTGGCAGCATTGAGCTTCCATCAATTTTTTGAGGGCATAGGACTTGGTGGATGTATCTATCAGGCGAAGTTCAGCCATAAGACAATGGCAGTGATGGTGGGATTCTTTTCACTGACGAGCCCATGTGGAATAGGTGTGGGCATAGCGATCTCCAACAGCTACAATGAGAATAGCCCCACTTCACTAGTTGTTGAAGGACTGCTCTTATCAGCATCTGCAGGGATTCTCATTTACATGGCACTCGTTGATCTTCTTGCTGCAGATTTCATAAACAATGCCAAAATGCTAACCAATCCCAAGCTCCAACTTGGGGCCAATTTTACTCTTCTTCTTGGAGCAGGGTTTATGTCACTCTTGGCCAAATTAGGAGATGAATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Zip

Protein Analysis

344

Amino Acids

36.78

Weight (kDa)

7.61

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 43 - 238 1.2e-41 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 80
AccB1I GGYRCC 1 cut(s) 167
AccB7I CCANNNNNTGG 1 cut(s) 470
AclWI GGATC 1 cut(s) 535
AcoI YGGCCR 2 cut(s) 390, 1008
AcsI RAATTY 1 cut(s) 526
AfaI GTAC 2 cut(s) 82, 431
AfiI CCNNNNNNNGG 3 cut(s) 368, 470, 961
AflIII ACRYGT 1 cut(s) 77
AgsI TTSAA 2 cut(s) 14, 845
AhlI ACTAGT 2 cut(s) 136, 835
AjuI GAANNNNNNNTTGG 2 cut(s) 17, 49
AluBI AGCT 6 cut(s) 285, 416, 631, 666, 810, 952
AluI AGCT 6 cut(s) 285, 416, 631, 666, 810, 952
Alw26I GTCTC 1 cut(s) 476
AlwI GGATC 1 cut(s) 535
AlwNI CAGNNNCTG 1 cut(s) 866
AoxI GGCC 4 cut(s) 252, 390, 963, 1008
ApeKI GCWGC 3 cut(s) 260, 656, 908
ApoI RAATTY 1 cut(s) 526
AspA2I CCTAGG 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 963
AsuHPI GGTGA 2 cut(s) 485, 607
AvrII CCTAGG 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 172
BalI TGGCCA 1 cut(s) 1010
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 773
BbvI GCAGC 3 cut(s) 272, 668, 895
BccI CCATC 6 cut(s) 228, 403, 464, 529, 678, 739
BciVI GTATCC 1 cut(s) 619
BclI TGATCA 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 476
BcuI ACTAGT 2 cut(s) 136, 835
BfaI CTAG 4 cut(s) 137, 173, 282, 836
BfmI CTRYAG 2 cut(s) 867, 909
BfuAI ACCTGC 1 cut(s) 80
BfuI GTATCC 1 cut(s) 619
BisI GCNGC 3 cut(s) 261, 657, 909
BlnI CCTAGG 1 cut(s) 172
BlsI GCNGC 3 cut(s) 262, 658, 910
BmgT120I GGNCC 1 cut(s) 963
BmiI GGNNCC 2 cut(s) 169, 964
BmrI ACTGGG 1 cut(s) 435
BmsI GCATC 2 cut(s) 295, 872
BmuI ACTGGG 1 cut(s) 435
BplI GAGNNNNNCTC 2 cut(s) 430, 462
Bpu10I CCTNAGC 1 cut(s) 309
BsaJI CCNNGG 3 cut(s) 172, 347, 613
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bsc4I CCNNNNNNNGG 3 cut(s) 368, 470, 961
Bse1I ACTGG 2 cut(s) 373, 430
BseDI CCNNGG 3 cut(s) 172, 347, 613
BseGI GGATG 2 cut(s) 220, 707
BseLI CCNNNNNNNGG 3 cut(s) 368, 470, 961
BseMII CTCAG 3 cut(s) 323, 349, 575
BseNI ACTGG 2 cut(s) 373, 430
BseSI GKGCMC 1 cut(s) 172
BseXI GCAGC 3 cut(s) 272, 668, 895
BsgI GTGCAG 1 cut(s) 58
BshFI GGCC 4 cut(s) 254, 392, 965, 1010
BshNI GGYRCC 1 cut(s) 167
BslFI GGGAC 1 cut(s) 412
BslI CCNNNNNNNGG 3 cut(s) 368, 470, 961
BsmAI GTCTC 1 cut(s) 476
BsmFI GGGAC 1 cut(s) 412
BsnI GGCC 4 cut(s) 254, 392, 965, 1010
Bsp1286I GDGCHC 2 cut(s) 172, 773
Bsp143I GATC 5 cut(s) 100, 123, 540, 798, 898
Bsp19I CCATGG 1 cut(s) 347
BspANI GGCC 4 cut(s) 254, 392, 965, 1010
BspCNI CTCAG 3 cut(s) 322, 348, 574
BspLI GGNNCC 2 cut(s) 169, 964
BspMAI CTGCAG 2 cut(s) 871, 913
BspMI ACCTGC 1 cut(s) 80
BspPI GGATC 1 cut(s) 535
BspT107I GGYRCC 1 cut(s) 167
BsrI ACTGG 2 cut(s) 373, 430
BssECI CCNNGG 3 cut(s) 172, 347, 613
BssMI GATC 5 cut(s) 100, 123, 540, 798, 898
BssT1I CCWWGG 2 cut(s) 172, 347
Bst6I CTCTTC 2 cut(s) 474, 981
BstDEI CTNAG 4 cut(s) 309, 335, 449, 561
BstDSI CCRYGG 1 cut(s) 347
BstF5I GGATG 2 cut(s) 220, 707
BstKTI GATC 5 cut(s) 103, 126, 543, 801, 901
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 5 cut(s) 100, 123, 540, 798, 898
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNSI RCATGY 1 cut(s) 81
BstSFI CTRYAG 2 cut(s) 867, 909
BstSLI GKGCMC 1 cut(s) 172
BstV1I GCAGC 3 cut(s) 272, 668, 895
BsuI GTATCC 1 cut(s) 619
BsuRI GGCC 4 cut(s) 254, 392, 965, 1010
BtgI CCRYGG 1 cut(s) 347
BtsCI GGATG 2 cut(s) 220, 707
BtsI GCAGTG 1 cut(s) 747
BtsIMutI CAGTG 3 cut(s) 366, 747, 761
BveI ACCTGC 1 cut(s) 80
CaiI CAGNNNCTG 1 cut(s) 866
Cfr13I GGNCC 1 cut(s) 963
Csp6I GTAC 2 cut(s) 81, 430
CviAII CATG 6 cut(s) 78, 293, 348, 497, 774, 886
CviQI GTAC 2 cut(s) 81, 430
DdeI CTNAG 4 cut(s) 309, 335, 449, 561
DpnI GATC 5 cut(s) 102, 125, 542, 800, 900
DpnII GATC 5 cut(s) 100, 123, 540, 798, 898
EaeI YGGCCR 2 cut(s) 390, 1008
Eam1104I CTCTTC 2 cut(s) 474, 981
EarI CTCTTC 2 cut(s) 474, 981
Eco130I CCWWGG 2 cut(s) 172, 347
Eco147I AGGCCT 1 cut(s) 254
Eco24I GRGCYC 1 cut(s) 773
EcoT14I CCWWGG 2 cut(s) 172, 347
EcoT38I GRGCYC 1 cut(s) 773
ErhI CCWWGG 2 cut(s) 172, 347
FaeI CATG 6 cut(s) 81, 296, 351, 500, 777, 889
FaqI GGGAC 1 cut(s) 412
FatI CATG 6 cut(s) 77, 292, 347, 496, 773, 885
FbaI TGATCA 1 cut(s) 123
Fnu4HI GCNGC 3 cut(s) 261, 657, 909
FokI GGATG 2 cut(s) 207, 714
FriOI GRGCYC 1 cut(s) 773
Fsp4HI GCNGC 3 cut(s) 261, 657, 909
FspBI CTAG 4 cut(s) 137, 173, 282, 836
GluI GCNGC 3 cut(s) 261, 657, 909
HaeIII GGCC 4 cut(s) 254, 392, 965, 1010
Hin1II CATG 6 cut(s) 81, 296, 351, 500, 777, 889
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 414
HinfI GANTC 5 cut(s) 177, 316, 753, 874, 1025
HpaI GTTAAC 1 cut(s) 205
HphI GGTGA 2 cut(s) 485, 607
Hpy166II GTNNAC 2 cut(s) 205, 366
Hpy188I TCNGA 3 cut(s) 321, 535, 545
Hpy188III TCNNGA 3 cut(s) 224, 302, 311
Hpy8I GTNNAC 2 cut(s) 205, 366
Hpy99I CGWCG 1 cut(s) 535
HpyAV CCTTC 3 cut(s) 193, 194, 839
HpyCH4V TGCA 6 cut(s) 75, 143, 260, 506, 869, 911
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 4 cut(s) 309, 335, 449, 561
Hsp92II CATG 6 cut(s) 81, 296, 351, 500, 777, 889
Ksp22I TGATCA 1 cut(s) 123
KspAI GTTAAC 1 cut(s) 205
Kzo9I GATC 5 cut(s) 100, 123, 540, 798, 898
LmnI GCTCC 2 cut(s) 957, 986
Lsp1109I GCAGC 3 cut(s) 272, 668, 895
LweI GCATC 2 cut(s) 295, 872
MaeI CTAG 4 cut(s) 137, 173, 282, 836
MaeIII GTNAC 1 cut(s) 999
MalI GATC 5 cut(s) 102, 125, 542, 800, 900
MboI GATC 5 cut(s) 100, 123, 540, 798, 898
MhlI GDGCHC 2 cut(s) 172, 773
MlsI TGGCCA 1 cut(s) 1010
MluCI AATT 5 cut(s) 526, 579, 674, 967, 1013
MluNI TGGCCA 1 cut(s) 1010
MlyI GAGTC 2 cut(s) 186, 325
MmeI TCCRAC 4 cut(s) 48, 513, 828, 979
MnlI CCTC 6 cut(s) 50, 344, 432, 468, 623, 676
Mox20I TGGCCA 1 cut(s) 1010
MscI TGGCCA 1 cut(s) 1010
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 884
Msp20I TGGCCA 1 cut(s) 1010
MwoI GCNNNNNNNGC 1 cut(s) 260
NcoI CCATGG 1 cut(s) 347
NdeII GATC 5 cut(s) 100, 123, 540, 798, 898
NlaIII CATG 6 cut(s) 81, 296, 351, 500, 777, 889
NlaIV GGNNCC 2 cut(s) 169, 964
NmuCI GTSAC 1 cut(s) 999
NspI RCATGY 1 cut(s) 81
PceI AGGCCT 1 cut(s) 254
PciI ACATGT 1 cut(s) 77
PcsI WCGNNNNNNNCGW 1 cut(s) 536
PfeI GAWTC 3 cut(s) 753, 874, 1025
PflMI CCANNNNNTGG 1 cut(s) 470
PkrI GCNGC 3 cut(s) 262, 658, 910
PleI GAGTC 2 cut(s) 185, 324
PpsI GAGTC 2 cut(s) 185, 324
PscI ACATGT 1 cut(s) 77
PspN4I GGNNCC 2 cut(s) 169, 964
PspPI GGNCC 1 cut(s) 963
PstI CTGCAG 2 cut(s) 871, 913
PstNI CAGNNNCTG 1 cut(s) 866
RsaI GTAC 2 cut(s) 82, 431
RsaNI GTAC 2 cut(s) 81, 430
RseI CAYNNNNRTG 1 cut(s) 884
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 3 cut(s) 261, 657, 909
Sau3AI GATC 5 cut(s) 100, 123, 540, 798, 898
Sau96I GGNCC 1 cut(s) 963
SchI GAGTC 2 cut(s) 186, 325
SduI GDGCHC 2 cut(s) 172, 773
SfaNI GCATC 2 cut(s) 295, 872
SfcI CTRYAG 2 cut(s) 867, 909
SmiMI CAYNNNNRTG 1 cut(s) 884
SpeI ACTAGT 2 cut(s) 136, 835
Sse9I AATT 5 cut(s) 526, 579, 674, 967, 1013
SseBI AGGCCT 1 cut(s) 254
SspMI CTAG 4 cut(s) 137, 173, 282, 836
StuI AGGCCT 1 cut(s) 254
StyI CCWWGG 2 cut(s) 172, 347
TaqI TCGA 3 cut(s) 68, 85, 103
TasI AATT 5 cut(s) 526, 579, 674, 967, 1013
TatI WGTACW 1 cut(s) 80
TfiI GAWTC 3 cut(s) 753, 874, 1025
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 3 cut(s) 373, 747, 768
TseFI GTSAC 1 cut(s) 999
TseI GCWGC 3 cut(s) 260, 656, 908
Tsp45I GTSAC 1 cut(s) 999
TspDTI ATGAA 4 cut(s) 281, 485, 492, 907
TspRI CASTG 3 cut(s) 373, 747, 768
Van91I CCANNNNNTGG 1 cut(s) 470
XapI RAATTY 1 cut(s) 526
XceI RCATGY 1 cut(s) 81
XmaJI CCTAGG 1 cut(s) 172
XspI CTAG 4 cut(s) 137, 173, 282, 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.