Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008851

Physical Location & Seq

Genomic Coordinates Reverse (-)

2950735 .. 2951233

Gene Structure 499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g04600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGGGGCATCTGATAATCCATGCACAATCACACCACTCATTGCTGCCCTTTGTTTCCATCAATTATTTGTAGAACTGGGTCTTGGTGGATGCATCGTACAGGCTGAATATGGTATCAAGATGAAAGTAATAATTATGTTCTTCTCAGCCACACCACCATTGGGGATAGTACTAGGGATTGCACTATCAAATATATACTGCGATGACAGTCCGACGGCTCTGATTGTGGTAAGGCTGCTAAATGCAGGGCTGCTCAACTATATGGCGCTGGTGGATCTCCTAGCAGCTGATTTCATGGGGACTAAACAGCATGCAAACATGAAGCTCCAAACAGTCTTATATTGCAGTTCTTTAAGGGGCAGGAGGCATGTCAGTAATGGCCATATGGGCTTAGCCTTGCAGATCAACGATAATGTCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

141

Amino Acids

15.08

Weight (kDa)

7.66

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008851)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12891 FvH4_3g12891 FvH4_3g12891
malus_domestica	MD05G1247400.v1.1 MD16G1052400.v1.1
prunus_persica	Prupe.4G117100_v2.0.a1 Prupe.4G117100_v2.0.a1
pyrus_communis	pycom16g04600
rosa_chinensis	RchiOBHm_Chr5g0020881 RchiOBHm_Chr5g0020981
rosa_laevigata	RLG00000032575
rosa_multiflora	Rmu_co8090108.1_g000001 Rmu_sc0007649.1_g000013 Rmu_ssc0000244.1_g000007
rosa_roxburghii	Rroxscaffold_1G00057490
rosa_rugosa	Rorug05G0063600 Rorug05G0063600
rosa_samantha	Rh5AG153100 Rh5AG153200 Rh5BG152900 Rh5CG165300 Rh5DG152200
rosa_wichuraiana	Rw5G013610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	282
AcoI	YGGCCR	1 cut(s)	379
AfaI	GTAC	2 cut(s)	99, 171
AfiI	CCNNNNNNNGG	1 cut(s)	161
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AluBI	AGCT	2 cut(s)	287, 325
AluI	AGCT	2 cut(s)	287, 325
AlwI	GGATC	1 cut(s)	282
AoxI	GGCC	1 cut(s)	379
ApeKI	GCWGC	4 cut(s)	44, 235, 250, 284
AspLEI	GCGC	1 cut(s)	268
BalI	TGGCCA	1 cut(s)	381
BbvI	GCAGC	4 cut(s)	31, 222, 237, 296
BccI	CCATC	1 cut(s)	66
BceAI	ACGGC	1 cut(s)	231
BfaI	CTAG	2 cut(s)	173, 281
BfoI	RGCGCY	1 cut(s)	269
BglI	GCCNNNNNGGC	1 cut(s)	387
BisI	GCNGC	4 cut(s)	45, 236, 251, 285
BlpI	GCTNAGC	1 cut(s)	391
BlsI	GCNGC	4 cut(s)	46, 237, 252, 286
BmcAI	AGTACT	1 cut(s)	171
BmrI	ACTGGG	1 cut(s)	86
BmsI	GCATC	3 cut(s)	17, 80, 102
BmuI	ACTGGG	1 cut(s)	86
Bpu1102I	GCTNAGC	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	81
BseXI	GCAGC	4 cut(s)	31, 222, 237, 296
BshFI	GGCC	1 cut(s)	381
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	381
Bsp143I	GATC	2 cut(s)	274, 402
Bsp1720I	GCTNAGC	1 cut(s)	391
BspANI	GGCC	1 cut(s)	381
BspCNI	CTCAG	1 cut(s)	158
BspPI	GGATC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	81
BssMI	GATC	2 cut(s)	274, 402
Bst4CI	ACNGT	2 cut(s)	209, 334
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	2 cut(s)	145, 391
BstF5I	GGATG	1 cut(s)	95
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	2 cut(s)	277, 405
BstMBI	GATC	2 cut(s)	274, 402
BstMWI	GCNNNNNNNGC	1 cut(s)	387
BstNSI	RCATGY	2 cut(s)	314, 371
BstV1I	GCAGC	4 cut(s)	31, 222, 237, 296
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	381
BtgZI	GCGATG	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	95
Cac8I	GCNNGC	1 cut(s)	312
CfoI	GCGC	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	98, 170
CviAII	CATG	5 cut(s)	21, 295, 311, 319, 368
CviQI	GTAC	2 cut(s)	98, 170
DdeI	CTNAG	2 cut(s)	145, 391
DpnI	GATC	2 cut(s)	276, 404
DpnII	GATC	2 cut(s)	274, 402
EaeI	YGGCCR	1 cut(s)	379
EcoT22I	ATGCAT	1 cut(s)	95
FaeI	CATG	5 cut(s)	24, 298, 314, 322, 371
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	5 cut(s)	20, 294, 310, 318, 367
FauNDI	CATATG	1 cut(s)	384
Fnu4HI	GCNGC	4 cut(s)	45, 236, 251, 285
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	4 cut(s)	45, 236, 251, 285
FspBI	CTAG	2 cut(s)	173, 281
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	4 cut(s)	45, 236, 251, 285
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	381
HhaI	GCGC	1 cut(s)	268
Hin1II	CATG	5 cut(s)	24, 298, 314, 322, 371
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
Hpy188I	TCNGA	3 cut(s)	13, 213, 222
Hpy188III	TCNNGA	1 cut(s)	118
Hpy99I	CGWCG	1 cut(s)	217
HpyCH4III	ACNGT	2 cut(s)	209, 334
HpyCH4V	TGCA	7 cut(s)	24, 93, 182, 245, 314, 345, 400
HpyF10VI	GCNNNNNNNGC	1 cut(s)	387
HpyF3I	CTNAG	2 cut(s)	145, 391
Hsp92II	CATG	5 cut(s)	24, 298, 314, 322, 371
HspAI	GCGC	1 cut(s)	266
Kzo9I	GATC	2 cut(s)	274, 402
LmnI	GCTCC	1 cut(s)	330
LpnPI	CCDG	5 cut(s)	62, 86, 231, 254, 346
Lsp1109I	GCAGC	4 cut(s)	31, 222, 237, 296
LweI	GCATC	3 cut(s)	17, 80, 102
MaeI	CTAG	2 cut(s)	173, 281
MalI	GATC	2 cut(s)	276, 404
MboI	GATC	2 cut(s)	274, 402
MboII	GAAGA	1 cut(s)	133
MflI	RGATCY	1 cut(s)	274
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	2 cut(s)	62, 132
MluNI	TGGCCA	1 cut(s)	381
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	1 cut(s)	357
Mox20I	TGGCCA	1 cut(s)	381
Mph1103I	ATGCAT	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	1 cut(s)	353
Msp20I	TGGCCA	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	387
NdeI	CATATG	1 cut(s)	384
NdeII	GATC	2 cut(s)	274, 402
NlaIII	CATG	5 cut(s)	24, 298, 314, 322, 371
NsiI	ATGCAT	1 cut(s)	95
NspI	RCATGY	2 cut(s)	314, 371
PaeI	GCATGC	1 cut(s)	314
PkrI	GCNGC	4 cut(s)	46, 237, 252, 286
PsuI	RGATCY	1 cut(s)	274
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	2 cut(s)	99, 171
RsaNI	GTAC	2 cut(s)	98, 170
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	4 cut(s)	45, 236, 251, 285
Sau3AI	GATC	2 cut(s)	274, 402
ScaI	AGTACT	1 cut(s)	171
SetI	ASST	2 cut(s)	289, 327
SfaNI	GCATC	3 cut(s)	17, 80, 102
SphI	GCATGC	1 cut(s)	314
Sse9I	AATT	2 cut(s)	62, 132
SspMI	CTAG	2 cut(s)	173, 281
TaaI	ACNGT	2 cut(s)	209, 334
TasI	AATT	2 cut(s)	62, 132
TatI	WGTACW	1 cut(s)	169
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TseI	GCWGC	4 cut(s)	44, 235, 250, 284
TspDTI	ATGAA	3 cut(s)	137, 283, 335
XceI	RCATGY	2 cut(s)	314, 371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157
XspI	CTAG	2 cut(s)	173, 281
ZrmI	AGTACT	1 cut(s)	171
Zsp2I	ATGCAT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.