Rw5G013610

zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0008851
Physical Location & Seq
Forward (+)
16088576 .. 16089932
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G013610.1

Sequence Viewer

Length: 732 bp
ATGAGTAAGTTCCAATCTAATTCAAGCAATTTCTTCAACACTAGCTTCTTTCTTATTCTTCTACCAGTTTTAGTATCTTCGACCTGCACATGTATGCAAGACGAAGATCGAAACCAATCCAAGCAACTGATCATATACAAAATAGTTGCAATCGTTTCAGTTCTGGTTTCTGGTGCCCTAGGAGTCTGTCTTCCATTTCTGGTGAAGATTAACATACCATTTCTCCACCCGGATAATGACTTCTATCTCCTAATCAAGGCCTTTGCAGCAGGAGTGATCTTAGCGACTGGCTTTGTTCATGTGCTTCCTGATGCTCAGGAGAGTTTGACAAGCCCTTGCCTCAGTCAAAAGCCATGGGGAAAGTTTCCGTTCACCGGTTTTGTTGCTATGGTTTCCGCCATTGGGACATTGATGATGGAAGCTTTGGCTACTGGGTACAAGAGGAGGTCTGCTCTTAGCAAACCTCAGCCATTAGATGGTGATGAAGAGACACATCATGTTCATGGTTCTGCATTGGTGTTAGAATCATCAAATTCATCCGATAGGATCCGAAATCGTATCATATCTCAGGTTTTGGAGTTGGGAATTATTGTCCATTCAGTGATTATTGGGGTATCCCTGGGTGCTTGCCAAAATCTACACACAATCAAGCCTTTGGTGGCAGCATTGAGTTTCCATCAATTTTTTGAGGGCATAGGACTTGGTGGATGTATCTTTCAGGTACTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Zip

Protein Analysis

243

Amino Acids

26.39

Weight (kDa)

6.69

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 46 - 240 1.7e-41 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 92
AccB1I GGYRCC 1 cut(s) 173
AccB7I CCANNNNNTGG 1 cut(s) 476
AciI CCGC 1 cut(s) 396
AclWI GGATC 2 cut(s) 541, 554
AcsI RAATTY 1 cut(s) 532
AfaI GTAC 2 cut(s) 437, 723
AfiI CCNNNNNNNGG 4 cut(s) 256, 374, 402, 476
AflIII ACRYGT 1 cut(s) 89
AgeI ACCGGT 1 cut(s) 374
AgsI TTSAA 2 cut(s) 24, 37
AjnI CCWGG 1 cut(s) 618
AluBI AGCT 2 cut(s) 45, 422
AluI AGCT 2 cut(s) 45, 422
Alw26I GTCTC 1 cut(s) 482
AlwI GGATC 2 cut(s) 541, 554
AoxI GGCC 1 cut(s) 258
ApeKI GCWGC 2 cut(s) 266, 662
ApoI RAATTY 1 cut(s) 532
AsiGI ACCGGT 1 cut(s) 374
AspA2I CCTAGG 1 cut(s) 178
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 3 cut(s) 214, 364, 491
AvrII CCTAGG 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 178
BamHI GGATCC 1 cut(s) 546
BanI GGYRCC 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 182
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 2 cut(s) 278, 674
BccI CCATC 3 cut(s) 409, 470, 684
BciT130I CCWGG 1 cut(s) 620
BciVI GTATCC 1 cut(s) 625
BclI TGATCA 1 cut(s) 129
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 2 cut(s) 42, 179
BfuAI ACCTGC 1 cut(s) 92
BfuI GTATCC 1 cut(s) 625
BisI GCNGC 2 cut(s) 267, 663
BlnI CCTAGG 1 cut(s) 178
BlsI GCNGC 2 cut(s) 268, 664
Bme1390I CCNGG 2 cut(s) 230, 620
BmiI GGNNCC 2 cut(s) 175, 548
BmrFI CCNGG 2 cut(s) 230, 620
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 1 cut(s) 301
BmuI ACTGGG 1 cut(s) 441
BpiI GAAGAC 1 cut(s) 182
BplI GAGNNNNNCTC 2 cut(s) 436, 468
Bpu10I CCTNAGC 2 cut(s) 315, 465
BpuMI CCSGG 1 cut(s) 230
BsaJI CCNNGG 4 cut(s) 178, 353, 618, 619
BsaWI WCCGGW 1 cut(s) 374
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bsc4I CCNNNNNNNGG 4 cut(s) 256, 374, 402, 476
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 3 cut(s) 65, 292, 436
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 4 cut(s) 178, 353, 618, 619
BseGI GGATG 2 cut(s) 536, 713
BseLI CCNNNNNNNGG 4 cut(s) 256, 374, 402, 476
BseMII CTCAG 4 cut(s) 329, 355, 479, 581
BseNI ACTGG 3 cut(s) 65, 292, 436
BseRI GAGGAG 1 cut(s) 457
BseSI GKGCMC 1 cut(s) 178
BseXI GCAGC 2 cut(s) 278, 674
BsgI GTGCAG 1 cut(s) 70
BshFI GGCC 1 cut(s) 260
BshNI GGYRCC 1 cut(s) 173
BshTI ACCGGT 1 cut(s) 374
BsiSI CCGG 2 cut(s) 230, 375
BslFI GGGAC 1 cut(s) 418
BslI CCNNNNNNNGG 4 cut(s) 256, 374, 402, 476
BsmAI GTCTC 1 cut(s) 482
BsmFI GGGAC 1 cut(s) 418
BsnI GGCC 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 4 cut(s) 106, 129, 276, 546
Bsp19I CCATGG 1 cut(s) 353
BspACI CCGC 1 cut(s) 396
BspANI GGCC 1 cut(s) 260
BspCNI CTCAG 4 cut(s) 328, 354, 478, 580
BspLI GGNNCC 2 cut(s) 175, 548
BspMI ACCTGC 1 cut(s) 92
BspPI GGATC 2 cut(s) 541, 554
BspT107I GGYRCC 1 cut(s) 173
BsrFI RCCGGY 1 cut(s) 374
BsrI ACTGG 3 cut(s) 65, 292, 436
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 4 cut(s) 178, 353, 618, 619
BssMI GATC 4 cut(s) 106, 129, 276, 546
BssT1I CCWWGG 2 cut(s) 178, 353
Bst2UI CCWGG 1 cut(s) 620
Bst6I CTCTTC 1 cut(s) 480
BstC8I GCNNGC 1 cut(s) 628
BstDEI CTNAG 6 cut(s) 280, 315, 341, 455, 465, 567
BstDSI CCRYGG 1 cut(s) 353
BstENI CCTNNNNNAGG 1 cut(s) 254
BstF5I GGATG 2 cut(s) 536, 713
BstKTI GATC 4 cut(s) 109, 132, 279, 549
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 4 cut(s) 106, 129, 276, 546
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 1 cut(s) 620
BstNSI RCATGY 1 cut(s) 93
BstSCI CCNGG 2 cut(s) 228, 618
BstSLI GKGCMC 1 cut(s) 178
BstV1I GCAGC 2 cut(s) 278, 674
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 546
BstYI RGATCY 1 cut(s) 546
BsuI GTATCC 1 cut(s) 625
BsuRI GGCC 1 cut(s) 260
BtgI CCRYGG 1 cut(s) 353
BtsCI GGATG 2 cut(s) 536, 713
BtsIMutI CAGTG 1 cut(s) 606
BveI ACCTGC 1 cut(s) 92
Cac8I GCNNGC 1 cut(s) 628
Cfr10I RCCGGY 1 cut(s) 374
Csp6I GTAC 2 cut(s) 436, 722
CspAI ACCGGT 1 cut(s) 374
CviAII CATG 5 cut(s) 90, 299, 354, 497, 503
CviJI RGCY 9 cut(s) 45, 260, 291, 333, 352, 422, 428, 469, 652
CviKI_1 RGCY 9 cut(s) 45, 260, 291, 333, 352, 422, 428, 469, 652
CviQI GTAC 2 cut(s) 436, 722
DdeI CTNAG 6 cut(s) 280, 315, 341, 455, 465, 567
DpnI GATC 4 cut(s) 108, 131, 278, 548
DpnII GATC 4 cut(s) 106, 129, 276, 546
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
EciI GGCGGA 1 cut(s) 385
Eco130I CCWWGG 2 cut(s) 178, 353
Eco147I AGGCCT 1 cut(s) 260
EcoNI CCTNNNNNAGG 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 618
EcoT14I CCWWGG 2 cut(s) 178, 353
ErhI CCWWGG 2 cut(s) 178, 353
FaeI CATG 5 cut(s) 93, 302, 357, 500, 506
FaqI GGGAC 1 cut(s) 418
FatI CATG 5 cut(s) 89, 298, 353, 496, 502
FbaI TGATCA 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 267, 663
FokI GGATG 2 cut(s) 523, 720
Fsp4HI GCNGC 2 cut(s) 267, 663
FspBI CTAG 2 cut(s) 42, 179
GluI GCNGC 2 cut(s) 267, 663
HaeIII GGCC 1 cut(s) 260
HapII CCGG 2 cut(s) 230, 375
Hin1II CATG 5 cut(s) 93, 302, 357, 500, 506
HindIII AAGCTT 1 cut(s) 420
HinfI GANTC 2 cut(s) 183, 524
HpaII CCGG 2 cut(s) 230, 375
HphI GGTGA 3 cut(s) 214, 364, 491
Hpy166II GTNNAC 1 cut(s) 372
Hpy188I TCNGA 2 cut(s) 541, 551
Hpy188III TCNNGA 2 cut(s) 308, 317
Hpy8I GTNNAC 1 cut(s) 372
HpyCH4V TGCA 5 cut(s) 87, 97, 149, 266, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 6 cut(s) 280, 315, 341, 455, 465, 567
Hsp92II CATG 5 cut(s) 93, 302, 357, 500, 506
Ksp22I TGATCA 1 cut(s) 129
Kzo9I GATC 4 cut(s) 106, 129, 276, 546
Lsp1109I GCAGC 2 cut(s) 278, 674
LweI GCATC 1 cut(s) 301
MaeI CTAG 2 cut(s) 42, 179
MalI GATC 4 cut(s) 108, 131, 278, 548
MboI GATC 4 cut(s) 106, 129, 276, 546
MboII GAAGA 7 cut(s) 25, 50, 69, 116, 182, 217, 497
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 5 cut(s) 19, 28, 532, 585, 680
MlyI GAGTC 1 cut(s) 192
MnlI CCTC 5 cut(s) 350, 435, 438, 474, 682
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 2 cut(s) 92, 501
MspI CCGG 2 cut(s) 230, 375
MspR9I CCNGG 2 cut(s) 230, 620
MvaI CCWGG 1 cut(s) 620
MwoI GCNNNNNNNGC 1 cut(s) 266
NciI CCSGG 1 cut(s) 230
NcoI CCATGG 1 cut(s) 353
NdeII GATC 4 cut(s) 106, 129, 276, 546
NlaIII CATG 5 cut(s) 93, 302, 357, 500, 506
NlaIV GGNNCC 2 cut(s) 175, 548
NspI RCATGY 1 cut(s) 93
PasI CCCWGGG 1 cut(s) 619
PceI AGGCCT 1 cut(s) 260
PciI ACATGT 1 cut(s) 89
PfeI GAWTC 1 cut(s) 524
PflMI CCANNNNNTGG 1 cut(s) 476
PinAI ACCGGT 1 cut(s) 374
PkrI GCNGC 2 cut(s) 268, 664
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PscI ACATGT 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 618
PspGI CCWGG 1 cut(s) 618
PspN4I GGNNCC 2 cut(s) 175, 548
PsuI RGATCY 1 cut(s) 546
RsaI GTAC 2 cut(s) 437, 723
RsaNI GTAC 2 cut(s) 436, 722
RseI CAYNNNNRTG 2 cut(s) 92, 501
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 267, 663
Sau3AI GATC 4 cut(s) 106, 129, 276, 546
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 2 cut(s) 230, 620
SduI GDGCHC 1 cut(s) 178
SetI ASST 7 cut(s) 47, 86, 424, 449, 466, 573, 723
SfaNI GCATC 1 cut(s) 301
SmiMI CAYNNNNRTG 2 cut(s) 92, 501
Sse9I AATT 5 cut(s) 19, 28, 532, 585, 680
SseBI AGGCCT 1 cut(s) 260
SsiI CCGC 1 cut(s) 396
SspMI CTAG 2 cut(s) 42, 179
StuI AGGCCT 1 cut(s) 260
StyD4I CCNGG 2 cut(s) 228, 618
StyI CCWWGG 2 cut(s) 178, 353
TaqI TCGA 2 cut(s) 80, 109
TasI AATT 5 cut(s) 19, 28, 532, 585, 680
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 606
TseI GCWGC 2 cut(s) 266, 662
TspDTI ATGAA 4 cut(s) 287, 491, 498, 525
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 1 cut(s) 606
Van91I CCANNNNNTGG 1 cut(s) 476
XagI CCTNNNNNAGG 1 cut(s) 254
XapI RAATTY 1 cut(s) 532
XceI RCATGY 1 cut(s) 93
XmaJI CCTAGG 1 cut(s) 178
XspI CTAG 2 cut(s) 42, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.