RchiOBHm_Chr5g0020981

zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0008851
Physical Location & Seq
Forward (+)
15237443 .. 15239813
2371 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30105

Sequence Viewer

Length: 1041 bp
ATGAGTAAGTTCCAATCGAATTCAAGCAATTTCTTCAACACTAGCTTCTTTCTTATTCTTCTACCAGTTTTAGTATCTTCGACCTGCACTTGTATTCAAAAGCAAGACGAAGATCGAAACCAATCCAAGCAACTGATCATATACAAAATAGTTGCAATCGTTTCAGTTCTGGTTTCTGGTGCCCTAGGAGTCTGTCTTCCATTTCTGGTGAAGATTAACATACCATTTCTCCACCCGGATAATGACTTCTATCTCCTAATCAAGGCCTTTGCAGCAGGAGTGATCTTAGCGACTGGCTTTGTTCATGTGCTTCCTGATGCTCAGGAGAGTTTGGCAAGCCCTTGCCTCAGTCAAAAGCCATGGGGAAAGTTTCCGTTCACCGGTTTTGTTGCTATGGTTTCGGCCATTGGGACATTGATGATGGAAGCTTTGGCTACTGGGTACAAGAAGAGGTCTGCTCTTAGCAAACCTCAGCCATTAGATGGTGATGAAGAGGCACATCATGTTCATGGTTCTGCATTGGTGTTAGAATCATCAAATTCATCGGATAGGATCCGAAATCGTATCATATCTCAGGTTTTGGAGTTGGGAATTATTGTCCATTCAGTGATTATTGGGGTATCCCTTGGTGCTTGCCAAAATCTACACACAATCAAGCCTTTGGTGGCAGCATTGAGTTTCCATCAATTTTTTGAGGGCATAGGACTTGGTGGATGTATCTATCAGAAGGCAAAGTTCAGCCATAAAACAATGGCAGTAATGGTGGGATTCTTTTCCATGACCAGCCCCTGTGGAATAGGTGTGGGCATGGCAATCTCCAACACATACAATGAGAATAGCCCCACTTCACTAGTTGTTGAAGGACTGCTATTATCAGCATCTGCAGGGATTCTCATTTACATGGCACTTGTTGATCTTCTTGCTGCTGATTTCATAAACAACGCCAAATTGATAAGCAATCCCAAGCTCCAACTTGGGGCAAATTTTACTCTTCTTCTAGGAGCAGGGTTTATGTCACTCTTGGCCAAGTTGGGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Zip

Protein Analysis

346

Amino Acids

37.06

Weight (kDa)

8.12

Isoelectric Point (pI)

33.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 48 - 342 5.5e-71 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 92
AccB1I GGYRCC 1 cut(s) 179
AccB7I CCANNNNNTGG 1 cut(s) 482
AclWI GGATC 2 cut(s) 547, 560
AcoI YGGCCR 2 cut(s) 402, 1023
AcsI RAATTY 3 cut(s) 19, 538, 982
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 4 cut(s) 262, 380, 482, 976
AgeI ACCGGT 1 cut(s) 380
AgsI TTSAA 4 cut(s) 24, 37, 98, 860
AhlI ACTAGT 1 cut(s) 850
AluBI AGCT 3 cut(s) 45, 428, 967
AluI AGCT 3 cut(s) 45, 428, 967
AlwI GGATC 2 cut(s) 547, 560
AlwNI CAGNNNCTG 2 cut(s) 789, 881
AoxI GGCC 3 cut(s) 264, 402, 1023
ApeKI GCWGC 3 cut(s) 272, 668, 923
ApoI RAATTY 3 cut(s) 19, 538, 982
AsiGI ACCGGT 1 cut(s) 380
AspA2I CCTAGG 1 cut(s) 184
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 3 cut(s) 220, 370, 497
AvrII CCTAGG 1 cut(s) 184
BaeGI GKGCMC 1 cut(s) 184
BalI TGGCCA 1 cut(s) 1025
BamHI GGATCC 1 cut(s) 552
BanI GGYRCC 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 188
BbvCI CCTCAGC 1 cut(s) 471
BbvI GCAGC 3 cut(s) 284, 680, 910
BccI CCATC 3 cut(s) 415, 476, 690
BciVI GTATCC 1 cut(s) 631
BclI TGATCA 1 cut(s) 135
BcnI CCSGG 1 cut(s) 236
BcuI ACTAGT 1 cut(s) 850
BfaI CTAG 4 cut(s) 42, 185, 851, 998
BfmI CTRYAG 1 cut(s) 882
BfuAI ACCTGC 1 cut(s) 92
BfuI GTATCC 1 cut(s) 631
BisI GCNGC 3 cut(s) 273, 669, 924
BlnI CCTAGG 1 cut(s) 184
BlsI GCNGC 3 cut(s) 274, 670, 925
Bme1390I CCNGG 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 181, 554
BmrFI CCNGG 1 cut(s) 236
BmrI ACTGGG 1 cut(s) 447
BmsI GCATC 2 cut(s) 307, 887
BmuI ACTGGG 1 cut(s) 447
BpiI GAAGAC 1 cut(s) 188
BplI GAGNNNNNCTC 2 cut(s) 442, 474
Bpu10I CCTNAGC 2 cut(s) 321, 471
BpuMI CCSGG 1 cut(s) 236
BsaJI CCNNGG 3 cut(s) 184, 359, 625
BsaWI WCCGGW 1 cut(s) 380
BsaXI ACNNNNNCTCC 2 cut(s) 213, 243
Bsc4I CCNNNNNNNGG 4 cut(s) 262, 380, 482, 976
Bse118I RCCGGY 1 cut(s) 380
Bse1I ACTGG 3 cut(s) 65, 298, 442
BseDI CCNNGG 3 cut(s) 184, 359, 625
BseGI GGATG 1 cut(s) 719
BseLI CCNNNNNNNGG 4 cut(s) 262, 380, 482, 976
BseMII CTCAG 4 cut(s) 335, 361, 485, 587
BseNI ACTGG 3 cut(s) 65, 298, 442
BseSI GKGCMC 1 cut(s) 184
BseXI GCAGC 3 cut(s) 284, 680, 910
BsgI GTGCAG 1 cut(s) 70
BshFI GGCC 3 cut(s) 266, 404, 1025
BshNI GGYRCC 1 cut(s) 179
BshTI ACCGGT 1 cut(s) 380
BsiSI CCGG 2 cut(s) 236, 381
BslFI GGGAC 1 cut(s) 424
BslI CCNNNNNNNGG 4 cut(s) 262, 380, 482, 976
BsmFI GGGAC 1 cut(s) 424
BsnI GGCC 3 cut(s) 266, 404, 1025
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 5 cut(s) 112, 135, 282, 552, 913
Bsp19I CCATGG 1 cut(s) 359
BspANI GGCC 3 cut(s) 266, 404, 1025
BspCNI CTCAG 4 cut(s) 334, 360, 484, 586
BspLI GGNNCC 2 cut(s) 181, 554
BspMAI CTGCAG 1 cut(s) 886
BspMI ACCTGC 1 cut(s) 92
BspPI GGATC 2 cut(s) 547, 560
BspT107I GGYRCC 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 380
BsrI ACTGG 3 cut(s) 65, 298, 442
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 3 cut(s) 184, 359, 625
BssMI GATC 5 cut(s) 112, 135, 282, 552, 913
BssT1I CCWWGG 3 cut(s) 184, 359, 625
Bst6I CTCTTC 3 cut(s) 443, 486, 996
BstC8I GCNNGC 2 cut(s) 337, 634
BstDEI CTNAG 6 cut(s) 286, 321, 347, 461, 471, 573
BstDSI CCRYGG 1 cut(s) 359
BstENI CCTNNNNNAGG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 719
BstKTI GATC 5 cut(s) 115, 138, 285, 555, 916
BstMBI GATC 5 cut(s) 112, 135, 282, 552, 913
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 234
BstSFI CTRYAG 1 cut(s) 882
BstSLI GKGCMC 1 cut(s) 184
BstV1I GCAGC 3 cut(s) 284, 680, 910
BstV2I GAAGAC 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 552
BstYI RGATCY 1 cut(s) 552
BsuI GTATCC 1 cut(s) 631
BsuRI GGCC 3 cut(s) 266, 404, 1025
BtgI CCRYGG 1 cut(s) 359
BtsCI GGATG 1 cut(s) 719
BtsIMutI CAGTG 1 cut(s) 612
BveI ACCTGC 1 cut(s) 92
Cac8I GCNNGC 2 cut(s) 337, 634
CaiI CAGNNNCTG 2 cut(s) 789, 881
Cfr10I RCCGGY 1 cut(s) 380
Csp6I GTAC 1 cut(s) 442
CspAI ACCGGT 1 cut(s) 380
CviAII CATG 7 cut(s) 305, 360, 503, 509, 778, 808, 901
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 6 cut(s) 286, 321, 347, 461, 471, 573
DpnI GATC 5 cut(s) 114, 137, 284, 554, 915
DpnII GATC 5 cut(s) 112, 135, 282, 552, 913
EaeI YGGCCR 2 cut(s) 402, 1023
Eam1104I CTCTTC 3 cut(s) 443, 486, 996
EarI CTCTTC 3 cut(s) 443, 486, 996
Eco130I CCWWGG 3 cut(s) 184, 359, 625
Eco147I AGGCCT 1 cut(s) 266
EcoNI CCTNNNNNAGG 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 19
EcoT14I CCWWGG 3 cut(s) 184, 359, 625
ErhI CCWWGG 3 cut(s) 184, 359, 625
FaeI CATG 7 cut(s) 308, 363, 506, 512, 781, 811, 904
FaqI GGGAC 1 cut(s) 424
FatI CATG 7 cut(s) 304, 359, 502, 508, 777, 807, 900
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 273, 669, 924
FokI GGATG 1 cut(s) 726
Fsp4HI GCNGC 3 cut(s) 273, 669, 924
FspBI CTAG 4 cut(s) 42, 185, 851, 998
GluI GCNGC 3 cut(s) 273, 669, 924
HaeIII GGCC 3 cut(s) 266, 404, 1025
HapII CCGG 2 cut(s) 236, 381
Hin1II CATG 7 cut(s) 308, 363, 506, 512, 781, 811, 904
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 4 cut(s) 189, 530, 768, 889
HpaII CCGG 2 cut(s) 236, 381
HphI GGTGA 3 cut(s) 220, 370, 497
Hpy166II GTNNAC 1 cut(s) 378
Hpy188I TCNGA 3 cut(s) 547, 557, 726
Hpy188III TCNNGA 2 cut(s) 314, 323
Hpy8I GTNNAC 1 cut(s) 378
HpyAV CCTTC 2 cut(s) 721, 854
HpyCH4V TGCA 5 cut(s) 87, 155, 272, 518, 884
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 6 cut(s) 286, 321, 347, 461, 471, 573
Hsp92II CATG 7 cut(s) 308, 363, 506, 512, 781, 811, 904
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 5 cut(s) 112, 135, 282, 552, 913
LmnI GCTCC 2 cut(s) 972, 1001
Lsp1109I GCAGC 3 cut(s) 284, 680, 910
LweI GCATC 2 cut(s) 307, 887
MaeI CTAG 4 cut(s) 42, 185, 851, 998
MaeIII GTNAC 1 cut(s) 1014
MalI GATC 5 cut(s) 114, 137, 284, 554, 915
MboI GATC 5 cut(s) 112, 135, 282, 552, 913
MflI RGATCY 1 cut(s) 552
MhlI GDGCHC 1 cut(s) 184
MlsI TGGCCA 1 cut(s) 1025
MluCI AATT 7 cut(s) 19, 28, 538, 591, 686, 947, 982
MluNI TGGCCA 1 cut(s) 1025
MlyI GAGTC 1 cut(s) 198
MmeI TCCRAC 2 cut(s) 843, 994
MnlI CCTC 5 cut(s) 356, 444, 480, 487, 688
Mox20I TGGCCA 1 cut(s) 1025
MscI TGGCCA 1 cut(s) 1025
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 2 cut(s) 507, 899
Msp20I TGGCCA 1 cut(s) 1025
MspI CCGG 2 cut(s) 236, 381
MspR9I CCNGG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 272
NciI CCSGG 1 cut(s) 236
NcoI CCATGG 1 cut(s) 359
NdeII GATC 5 cut(s) 112, 135, 282, 552, 913
NlaIII CATG 7 cut(s) 308, 363, 506, 512, 781, 811, 904
NlaIV GGNNCC 2 cut(s) 181, 554
NmuCI GTSAC 1 cut(s) 1014
PceI AGGCCT 1 cut(s) 266
PfeI GAWTC 3 cut(s) 530, 768, 889
PflMI CCANNNNNTGG 1 cut(s) 482
PinAI ACCGGT 1 cut(s) 380
PkrI GCNGC 3 cut(s) 274, 670, 925
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 181, 554
PstI CTGCAG 1 cut(s) 886
PstNI CAGNNNCTG 2 cut(s) 789, 881
PsuI RGATCY 1 cut(s) 552
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
RseI CAYNNNNRTG 2 cut(s) 507, 899
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 3 cut(s) 273, 669, 924
Sau3AI GATC 5 cut(s) 112, 135, 282, 552, 913
SchI GAGTC 1 cut(s) 198
ScrFI CCNGG 1 cut(s) 236
SduI GDGCHC 1 cut(s) 184
SetI ASST 8 cut(s) 47, 86, 430, 455, 472, 579, 802, 969
SfaNI GCATC 2 cut(s) 307, 887
SfcI CTRYAG 1 cut(s) 882
SmiMI CAYNNNNRTG 2 cut(s) 507, 899
SpeI ACTAGT 1 cut(s) 850
Sse9I AATT 7 cut(s) 19, 28, 538, 591, 686, 947, 982
SseBI AGGCCT 1 cut(s) 266
SspMI CTAG 4 cut(s) 42, 185, 851, 998
StuI AGGCCT 1 cut(s) 266
StyD4I CCNGG 1 cut(s) 234
StyI CCWWGG 3 cut(s) 184, 359, 625
TaqI TCGA 3 cut(s) 17, 80, 115
TasI AATT 7 cut(s) 19, 28, 538, 591, 686, 947, 982
TfiI GAWTC 3 cut(s) 530, 768, 889
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 612
TseFI GTSAC 1 cut(s) 1014
TseI GCWGC 3 cut(s) 272, 668, 923
Tsp45I GTSAC 1 cut(s) 1014
TspDTI ATGAA 5 cut(s) 293, 497, 504, 531, 922
TspGWI ACGGA 1 cut(s) 363
TspRI CASTG 1 cut(s) 612
Van91I CCANNNNNTGG 1 cut(s) 482
XagI CCTNNNNNAGG 1 cut(s) 260
XapI RAATTY 3 cut(s) 19, 538, 982
XmaJI CCTAGG 1 cut(s) 184
XspI CTAG 4 cut(s) 42, 185, 851, 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.