Rorug05G0063600

zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0008851
Physical Location & Seq
Reverse (-)
5523159 .. 5526489
3331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0063600.1

Sequence Viewer

Length: 342 bp
ATGATTCAGTGCTCTCCGCTCGGTAAGAACAACTGGAAAGGGGATTTTGTTCACAACCGAGAGCAGGTCGATTCAAGCATTAGCCTTGGTTCTGCTAAGGCAAGGTATCAAGGGCATCTTCTTGCAAAAGAATTGGCTGGAAGAGGTTTACAAACAGCGCTGATTACTGATTCTGCAATTTTTGCTATGATATCTCAAGTGATCATGGTTATAGTTGGTGCTCATGCTGTCATGGCCAATGGTGGTGTTATAGCACCTGTTGGGTTGAATATGGTTGCACTTGCAGCCCAAAGGCATGCTGTCCCTTTTGTTGTACTTGCTGGCAGTTACAAGTCTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Zip

Protein Analysis

113

Amino Acids

11.86

Weight (kDa)

9.44

Isoelectric Point (pI)

27.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF-2B PF01008 35 - 111 1.3e-22 Initiation factor 2 subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 55
AccBSI CCGCTC 1 cut(s) 19
AciI CCGC 1 cut(s) 17
AcoI YGGCCR 1 cut(s) 234
AfaI GTAC 1 cut(s) 315
AfeI AGCGCT 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 2 cut(s) 75, 268
Alw21I GWGCWC 2 cut(s) 14, 223
Aor51HI AGCGCT 1 cut(s) 159
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 1 cut(s) 284
AspLEI GCGC 1 cut(s) 160
BalI TGGCCA 1 cut(s) 236
Bbv12I GWGCWC 2 cut(s) 14, 223
BbvI GCAGC 1 cut(s) 296
BclI TGATCA 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 161
BfuAI ACCTGC 1 cut(s) 55
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
BmsI GCATC 1 cut(s) 124
Bpu10I CCTNAGC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 85
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 85
BseLI CCNNNNNNNGG 1 cut(s) 64
BseNI ACTGG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 296
BshFI GGCC 1 cut(s) 236
BsiHKAI GWGCWC 2 cut(s) 14, 223
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 64
BsmFI GGGAC 1 cut(s) 287
BsnI GGCC 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 14, 223
Bsp143I GATC 1 cut(s) 201
BspACI CCGC 1 cut(s) 17
BspANI GGCC 1 cut(s) 236
BspMI ACCTGC 1 cut(s) 55
BsrBI CCGCTC 1 cut(s) 19
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 1 cut(s) 201
BssT1I CCWWGG 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 136
BstAPI GCANNNNNTGC 1 cut(s) 182
BstC8I GCNNGC 2 cut(s) 297, 322
BstDEI CTNAG 1 cut(s) 96
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 1 cut(s) 204
BstMBI GATC 1 cut(s) 201
BstMWI GCNNNNNNNGC 3 cut(s) 182, 233, 284
BstNSI RCATGY 1 cut(s) 299
BstV1I GCAGC 1 cut(s) 296
BsuRI GGCC 1 cut(s) 236
BtsIMutI CAGTG 1 cut(s) 14
BveI ACCTGC 1 cut(s) 55
Cac8I GCNNGC 2 cut(s) 297, 322
CfoI GCGC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 314
CviAII CATG 4 cut(s) 205, 224, 232, 296
CviJI RGCY 4 cut(s) 84, 137, 236, 287
CviKI_1 RGCY 4 cut(s) 84, 137, 236, 287
CviQI GTAC 1 cut(s) 314
DdeI CTNAG 1 cut(s) 96
DpnI GATC 1 cut(s) 203
DpnII GATC 1 cut(s) 201
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 136
EarI CTCTTC 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 85
Eco32I GATATC 1 cut(s) 192
Eco47III AGCGCT 1 cut(s) 159
EcoRV GATATC 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 4 cut(s) 208, 227, 235, 299
FaiI YATR 8 cut(s) 188, 206, 212, 225, 233, 251, 272, 297
FalI AAGNNNNNCTT 2 cut(s) 102, 134
FaqI GGGAC 1 cut(s) 287
FatI CATG 4 cut(s) 204, 223, 231, 295
FbaI TGATCA 1 cut(s) 201
Fnu4HI GCNGC 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 285
GlaI GCGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 285
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 1 cut(s) 236
HhaI GCGC 1 cut(s) 160
Hin1II CATG 4 cut(s) 208, 227, 235, 299
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HinfI GANTC 3 cut(s) 4, 71, 170
Hpy166II GTNNAC 2 cut(s) 52, 149
Hpy8I GTNNAC 2 cut(s) 52, 149
HpyCH4V TGCA 4 cut(s) 125, 176, 278, 284
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 233, 284
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 4 cut(s) 208, 227, 235, 299
HspAI GCGC 1 cut(s) 158
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 1 cut(s) 201
LpnPI CCDG 5 cut(s) 19, 50, 123, 270, 306
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 1 cut(s) 124
MaeIII GTNAC 1 cut(s) 326
MalI GATC 1 cut(s) 203
MbiI CCGCTC 1 cut(s) 19
MboI GATC 1 cut(s) 201
MboII GAAGA 2 cut(s) 110, 153
MhlI GDGCHC 2 cut(s) 14, 223
MlsI TGGCCA 1 cut(s) 236
MluCI AATT 2 cut(s) 131, 177
MluNI TGGCCA 1 cut(s) 236
MnlI CCTC 1 cut(s) 137
Mox20I TGGCCA 1 cut(s) 236
MscI TGGCCA 1 cut(s) 236
Msp20I TGGCCA 1 cut(s) 236
MwoI GCNNNNNNNGC 3 cut(s) 182, 233, 284
NdeII GATC 1 cut(s) 201
NlaIII CATG 4 cut(s) 208, 227, 235, 299
NspI RCATGY 1 cut(s) 299
PaeI GCATGC 1 cut(s) 299
PfeI GAWTC 3 cut(s) 4, 71, 170
PkrI GCNGC 1 cut(s) 286
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 1 cut(s) 201
SduI GDGCHC 2 cut(s) 14, 223
SetI ASST 4 cut(s) 69, 107, 148, 259
SfaNI GCATC 1 cut(s) 124
SmlI CTYRAG 1 cut(s) 195
SmoI CTYRAG 1 cut(s) 195
SphI GCATGC 1 cut(s) 299
Sse9I AATT 2 cut(s) 131, 177
SsiI CCGC 1 cut(s) 17
StyI CCWWGG 1 cut(s) 85
TaqI TCGA 1 cut(s) 69
TasI AATT 2 cut(s) 131, 177
TatI WGTACW 1 cut(s) 313
TfiI GAWTC 3 cut(s) 4, 71, 170
TscAI CASTG 1 cut(s) 14
TseI GCWGC 1 cut(s) 284
TspRI CASTG 1 cut(s) 14
XceI RCATGY 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.