Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007649.1

Orthogroup ID

OG0008851

Physical Location & Seq

Genomic Coordinates Reverse (-)

70893 .. 71168

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007649.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atggtgctgttcttctcccttacaacccctgttggaatcgcgattggaattggaatatcaagccattacaaggaaaacagtccagctgctctcatacttgaaggaacttttaatgcggcatcagctgggatcttaatctacatgtctctggtcgatctgctagcggctgattttatgaacccgaaaatgcagaagaatgtgaagcttcaaattggggctaatgcttcacttctttttggagctggttgcatgtctcttatggccaaatgggcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

91

Amino Acids

9.58

Weight (kDa)

7.89

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008851)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12891 FvH4_3g12891 FvH4_3g12891
malus_domestica	MD05G1247400.v1.1 MD16G1052400.v1.1
prunus_persica	Prupe.4G117100_v2.0.a1 Prupe.4G117100_v2.0.a1
pyrus_communis	pycom16g04600
rosa_chinensis	RchiOBHm_Chr5g0020881 RchiOBHm_Chr5g0020981
rosa_laevigata	RLG00000032575
rosa_multiflora	Rmu_co8090108.1_g000001 Rmu_sc0007649.1_g000013 Rmu_ssc0000244.1_g000007
rosa_roxburghii	Rroxscaffold_1G00057490
rosa_rugosa	Rorug05G0063600 Rorug05G0063600
rosa_samantha	Rh5AG153100 Rh5AG153200 Rh5BG152900 Rh5CG165300 Rh5DG152200
rosa_wichuraiana	Rw5G013610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	41
AciI	CCGC	2 cut(s)	116, 164
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	261
AfiI	CCNNNNNNNGG	1 cut(s)	70
AflIII	ACRYGT	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	101, 209
AluBI	AGCT	4 cut(s)	86, 125, 205, 242
AluI	AGCT	4 cut(s)	86, 125, 205, 242
Alw26I	GTCTC	2 cut(s)	150, 258
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	86
AsuNHI	GCTAGC	1 cut(s)	160
BalI	TGGCCA	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	73
BcoDI	GTCTC	2 cut(s)	150, 258
BfaI	CTAG	1 cut(s)	161
BglI	GCCNNNNNGGC	1 cut(s)	269
BisI	GCNGC	3 cut(s)	87, 117, 165
BlsI	GCNGC	3 cut(s)	88, 118, 166
BmsI	GCATC	1 cut(s)	128
BmtI	GCTAGC	1 cut(s)	164
BsaBI	GATNNNNATC	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse8I	GATNNNNATC	1 cut(s)	134
BseJI	GATNNNNATC	1 cut(s)	134
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	73
BseYI	CCCAGC	1 cut(s)	125
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	2 cut(s)	150, 258
BsnI	GGCC	1 cut(s)	263
Bsp143I	GATC	2 cut(s)	129, 154
Bsp68I	TCGCGA	1 cut(s)	41
BspACI	CCGC	2 cut(s)	116, 164
BspANI	GGCC	1 cut(s)	263
BspFNI	CGCG	1 cut(s)	41
BspOI	GCTAGC	1 cut(s)	164
BspPI	GGATC	1 cut(s)	137
BssMI	GATC	2 cut(s)	129, 154
Bst4CI	ACNGT	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	41
BstKTI	GATC	2 cut(s)	132, 157
BstMAI	GTCTC	2 cut(s)	150, 258
BstMBI	GATC	2 cut(s)	129, 154
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 269
BstNSI	RCATGY	2 cut(s)	145, 253
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	263
BtuMI	TCGCGA	1 cut(s)	41
Cac8I	GCNNGC	1 cut(s)	162
CviAII	CATG	2 cut(s)	142, 250
CviJI	RGCY	9 cut(s)	63, 86, 125, 167, 205, 218, 242, 263, 272
CviKI_1	RGCY	9 cut(s)	63, 86, 125, 167, 205, 218, 242, 263, 272
DpnI	GATC	2 cut(s)	131, 156
DpnII	GATC	2 cut(s)	129, 154
EaeI	YGGCCR	1 cut(s)	261
FaeI	CATG	2 cut(s)	145, 253
FaiI	YATR	5 cut(s)	95, 143, 176, 251, 260
FatI	CATG	2 cut(s)	141, 249
Fnu4HI	GCNGC	3 cut(s)	87, 117, 165
Fsp4HI	GCNGC	3 cut(s)	87, 117, 165
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	3 cut(s)	87, 117, 165
GsaI	CCCAGC	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	263
Hin1II	CATG	2 cut(s)	145, 253
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	1 cut(s)	36
Hpy188III	TCNNGA	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4V	TGCA	2 cut(s)	190, 249
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 269
Hsp92II	CATG	2 cut(s)	145, 253
Kzo9I	GATC	2 cut(s)	129, 154
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	5 cut(s)	42, 96, 111, 134, 228
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	1 cut(s)	161
MalI	GATC	2 cut(s)	131, 156
MboI	GATC	2 cut(s)	129, 154
MboII	GAAGA	2 cut(s)	4, 205
MflI	RGATCY	1 cut(s)	129
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	2 cut(s)	48, 210
MluNI	TGGCCA	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	13
Mox20I	TGGCCA	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	3 cut(s)	111, 134, 274
Msp20I	TGGCCA	1 cut(s)	263
MspA1I	CMGCKG	2 cut(s)	86, 125
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	122, 269
NdeII	GATC	2 cut(s)	129, 154
NheI	GCTAGC	1 cut(s)	160
NlaIII	CATG	2 cut(s)	145, 253
NruI	TCGCGA	1 cut(s)	41
NspI	RCATGY	2 cut(s)	145, 253
PciI	ACATGT	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	36
PkrI	GCNGC	3 cut(s)	88, 118, 166
PscI	ACATGT	1 cut(s)	141
PspFI	CCCAGC	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	129
PvuII	CAGCTG	2 cut(s)	86, 125
RruI	TCGCGA	1 cut(s)	41
SaqAI	TTAA	3 cut(s)	111, 134, 274
SatI	GCNGC	3 cut(s)	87, 117, 165
Sau3AI	GATC	2 cut(s)	129, 154
SetI	ASST	4 cut(s)	88, 127, 207, 244
SfaNI	GCATC	1 cut(s)	128
Sse9I	AATT	2 cut(s)	48, 210
SsiI	CCGC	2 cut(s)	116, 164
SspMI	CTAG	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	80
TaqI	TCGA	1 cut(s)	153
TasI	AATT	2 cut(s)	48, 210
TauI	GCSGC	2 cut(s)	119, 167
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	3 cut(s)	111, 134, 274
Tru9I	TTAA	3 cut(s)	111, 134, 274
TseI	GCWGC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	191
XceI	RCATGY	2 cut(s)	145, 253
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.