MD05G1247400.v1.1

zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0008851
Physical Location & Seq
Reverse (-)
37881115 .. 37882270
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1247400.v1.1.491

Sequence Viewer

Length: 852 bp
ATGTATGGCCTTGCTTGCTCATTACTTGACAAGGAGCAAGAACACATTTGGCCTCTTTCTCTACTCTGTCTGTATATCGATGAGCATGGAAATATTCCCACCATAGTTTCTTCAGTTCTACCTTTTTTATCACTCTCTTTTTGTCTTTCCATTTTGTACAATGATCACAAGTTCAGACGACTTGATTTAAATTACAGTTTCTTCACCATCCTCTTCCTAATTCTTCTTCTACCAATCTTGACATCTTCAGCATGTACATCCGAAAAGAAAGACGAACACCGAAACGAATCTAAATTGCTGATCAGATATAAACTAATTGCAATAGCCTCAGTCCTAGTTTCTGGTGCACTAGGAGTTTGTCTTCCATTCTTGGTGAAGAACATACCATTTTTCCACCCGGAAAAAGACTTGTATCTCTTGATCAAAGCCTTTGTGGCCGGGGTGATTTTAGCAACGGGGTTTGTTCATCTGCTTCCTGATGCTAACGACAGCTTGACAAGCCCCTGCCTTAGTGAAAACCCATGGAGAAGGTTTCCCTTTACAGGTTTTGTTGCCATGGTGTCAGCCATTGGGACATTGATAATGGAAGCTATTGCTACTGGGTATCAGAAGAGGTCTGAGCTCGGGAAACCTCAGCCAGTTGATGGTTATGAAGAAAATGATCATGCTGTTCATTTTCATGGTTCTGCATCAAATTCGCCGGAGCTGATCCGTCATCGAATCATATCACAGGTTCTGGAATTGGGCATTCTGGTTCATTCAGTGATCATTGGAATATCTCTTGGTGCTTGTCAAAGTCAACACACAATCAAGCCTTTGGTGGCAGCATTGAGTTTCCATCAATTTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Zip

Protein Analysis

284

Amino Acids

31.52

Weight (kDa)

6.49

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 103 - 283 6.2e-35 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 644
AclWI GGATC 1 cut(s) 703
AcoI YGGCCR 1 cut(s) 435
AcsI RAATTY 1 cut(s) 694
AcuI CTGAAG 2 cut(s) 96, 231
AfaI GTAC 2 cut(s) 158, 256
AfiI CCNNNNNNNGG 2 cut(s) 542, 644
AluBI AGCT 4 cut(s) 492, 590, 622, 706
AluI AGCT 4 cut(s) 492, 590, 622, 706
Alw21I GWGCWC 2 cut(s) 349, 624
Alw44I GTGCAC 1 cut(s) 345
AlwI GGATC 1 cut(s) 703
AlwNI CAGNNNCTG 1 cut(s) 736
Ama87I CYCGRG 1 cut(s) 623
AoxI GGCC 3 cut(s) 7, 50, 435
ApaLI GTGCAC 1 cut(s) 345
ApeKI GCWGC 1 cut(s) 824
ApoI RAATTY 1 cut(s) 694
AsuC2I CCSGG 2 cut(s) 398, 439
AsuHPI GGTGA 3 cut(s) 196, 385, 454
AvaI CYCGRG 1 cut(s) 623
BaeGI GKGCMC 1 cut(s) 349
BanII GRGCYC 1 cut(s) 624
BbsI GAAGAC 1 cut(s) 353
Bbv12I GWGCWC 2 cut(s) 349, 624
BbvCI CCTCAGC 1 cut(s) 633
BbvI GCAGC 1 cut(s) 836
BccI CCATC 3 cut(s) 215, 638, 846
BcgI CGANNNNNNTGC 2 cut(s) 678, 712
BclI TGATCA 5 cut(s) 163, 300, 420, 661, 765
BcnI CCSGG 2 cut(s) 398, 439
BfaI CTAG 2 cut(s) 335, 350
BglI GCCNNNNNGGC 1 cut(s) 434
BisI GCNGC 1 cut(s) 825
BlsI GCNGC 1 cut(s) 826
Bme1390I CCNGG 2 cut(s) 398, 439
BmeT110I CYCGRG 1 cut(s) 623
BmrFI CCNGG 2 cut(s) 398, 439
BmrI ACTGGG 1 cut(s) 609
BmsI GCATC 2 cut(s) 469, 698
BmuI ACTGGG 1 cut(s) 609
BpiI GAAGAC 1 cut(s) 353
Bpu10I CCTNAGC 1 cut(s) 633
BpuMI CCSGG 2 cut(s) 398, 439
Bsa29I ATCGAT 1 cut(s) 78
BsaJI CCNNGG 3 cut(s) 438, 521, 555
Bsc4I CCNNNNNNNGG 2 cut(s) 542, 644
Bse1I ACTGG 2 cut(s) 604, 638
BseCI ATCGAT 1 cut(s) 78
BseDI CCNNGG 3 cut(s) 438, 521, 555
BseGI GGATG 2 cut(s) 207, 257
BseLI CCNNNNNNNGG 2 cut(s) 542, 644
BseMII CTCAG 3 cut(s) 342, 609, 647
BseNI ACTGG 2 cut(s) 604, 638
BseSI GKGCMC 1 cut(s) 349
BseXI GCAGC 1 cut(s) 836
BshFI GGCC 3 cut(s) 9, 52, 437
BshVI ATCGAT 1 cut(s) 78
BsiHKAI GWGCWC 2 cut(s) 349, 624
BsiHKCI CYCGRG 1 cut(s) 623
BsiSI CCGG 3 cut(s) 398, 438, 701
BslFI GGGAC 1 cut(s) 586
BslI CCNNNNNNNGG 2 cut(s) 542, 644
BsmFI GGGAC 1 cut(s) 586
BsmI GAATGC 1 cut(s) 747
BsnI GGCC 3 cut(s) 9, 52, 437
BsoBI CYCGRG 1 cut(s) 623
Bsp1286I GDGCHC 2 cut(s) 349, 624
Bsp1407I TGTACA 2 cut(s) 156, 254
Bsp143I GATC 6 cut(s) 163, 300, 420, 661, 708, 765
Bsp19I CCATGG 2 cut(s) 521, 555
BspANI GGCC 3 cut(s) 9, 52, 437
BspCNI CTCAG 3 cut(s) 341, 610, 646
BspDI ATCGAT 1 cut(s) 78
BspPI GGATC 1 cut(s) 703
BsrGI TGTACA 2 cut(s) 156, 254
BsrI ACTGG 2 cut(s) 604, 638
BssECI CCNNGG 3 cut(s) 438, 521, 555
BssMI GATC 6 cut(s) 163, 300, 420, 661, 708, 765
BssT1I CCWWGG 2 cut(s) 521, 555
Bst4CI ACNGT 1 cut(s) 197
Bst6I CTCTTC 2 cut(s) 218, 605
BstAUI TGTACA 2 cut(s) 156, 254
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 4 cut(s) 328, 509, 618, 633
BstDSI CCRYGG 2 cut(s) 521, 555
BstF5I GGATG 2 cut(s) 207, 257
BstKTI GATC 6 cut(s) 166, 303, 423, 664, 711, 768
BstMBI GATC 6 cut(s) 163, 300, 420, 661, 708, 765
BstMWI GCNNNNNNNGC 3 cut(s) 15, 434, 498
BstNSI RCATGY 1 cut(s) 255
BstSCI CCNGG 2 cut(s) 396, 437
BstSLI GKGCMC 1 cut(s) 349
BstV1I GCAGC 1 cut(s) 836
BstV2I GAAGAC 1 cut(s) 353
Bsu15I ATCGAT 1 cut(s) 78
BsuRI GGCC 3 cut(s) 9, 52, 437
BsuTUI ATCGAT 1 cut(s) 78
BtgI CCRYGG 2 cut(s) 521, 555
BtsCI GGATG 2 cut(s) 207, 257
BtsIMutI CAGTG 1 cut(s) 768
Cac8I GCNNGC 1 cut(s) 16
CaiI CAGNNNCTG 1 cut(s) 736
ClaI ATCGAT 1 cut(s) 78
Csp6I GTAC 2 cut(s) 157, 255
CviAII CATG 6 cut(s) 86, 252, 522, 556, 665, 680
CviQI GTAC 2 cut(s) 157, 255
DdeI CTNAG 4 cut(s) 328, 509, 618, 633
DpnI GATC 6 cut(s) 165, 302, 422, 663, 710, 767
DpnII GATC 6 cut(s) 163, 300, 420, 661, 708, 765
DraI TTTAAA 1 cut(s) 189
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 2 cut(s) 218, 605
EarI CTCTTC 2 cut(s) 218, 605
Ecl136II GAGCTC 1 cut(s) 622
Eco130I CCWWGG 2 cut(s) 521, 555
Eco24I GRGCYC 1 cut(s) 624
Eco53kI GAGCTC 1 cut(s) 622
Eco57I CTGAAG 2 cut(s) 96, 231
Eco88I CYCGRG 1 cut(s) 623
EcoICRI GAGCTC 1 cut(s) 622
EcoT14I CCWWGG 2 cut(s) 521, 555
EcoT38I GRGCYC 1 cut(s) 624
ErhI CCWWGG 2 cut(s) 521, 555
FaeI CATG 6 cut(s) 89, 255, 525, 559, 668, 683
FaqI GGGAC 1 cut(s) 586
FatI CATG 6 cut(s) 85, 251, 521, 555, 664, 679
FbaI TGATCA 5 cut(s) 163, 300, 420, 661, 765
Fnu4HI GCNGC 1 cut(s) 825
FokI GGATG 2 cut(s) 194, 244
FriOI GRGCYC 1 cut(s) 624
Fsp4HI GCNGC 1 cut(s) 825
FspBI CTAG 2 cut(s) 335, 350
GluI GCNGC 1 cut(s) 825
HaeIII GGCC 3 cut(s) 9, 52, 437
HapII CCGG 3 cut(s) 398, 438, 701
Hin1II CATG 6 cut(s) 89, 255, 525, 559, 668, 683
HincII GTYRAC 1 cut(s) 800
HindII GTYRAC 1 cut(s) 800
HinfI GANTC 2 cut(s) 287, 720
HpaII CCGG 3 cut(s) 398, 438, 701
HphI GGTGA 3 cut(s) 196, 385, 454
Hpy166II GTNNAC 2 cut(s) 347, 800
Hpy188I TCNGA 5 cut(s) 176, 262, 305, 609, 619
Hpy188III TCNNGA 5 cut(s) 238, 418, 476, 625, 737
Hpy8I GTNNAC 2 cut(s) 347, 800
HpyAV CCTTC 1 cut(s) 522
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4V TGCA 3 cut(s) 320, 347, 689
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 434, 498
HpyF3I CTNAG 4 cut(s) 328, 509, 618, 633
Hsp92II CATG 6 cut(s) 89, 255, 525, 559, 668, 683
Ksp22I TGATCA 5 cut(s) 163, 300, 420, 661, 765
Kzo9I GATC 6 cut(s) 163, 300, 420, 661, 708, 765
LmnI GCTCC 2 cut(s) 34, 703
Lsp1109I GCAGC 1 cut(s) 836
LweI GCATC 2 cut(s) 469, 698
MaeI CTAG 2 cut(s) 335, 350
MalI GATC 6 cut(s) 165, 302, 422, 663, 710, 767
MboI GATC 6 cut(s) 163, 300, 420, 661, 708, 765
MhlI GDGCHC 2 cut(s) 349, 624
MluCI AATT 7 cut(s) 190, 219, 293, 315, 694, 740, 842
MnlI CCTC 5 cut(s) 63, 221, 337, 606, 642
MseI TTAA 1 cut(s) 188
MslI CAYNNNNRTG 1 cut(s) 678
MspI CCGG 3 cut(s) 398, 438, 701
MspR9I CCNGG 2 cut(s) 398, 439
Mva1269I GAATGC 1 cut(s) 747
MwoI GCNNNNNNNGC 3 cut(s) 15, 434, 498
NciI CCSGG 2 cut(s) 398, 439
NcoI CCATGG 2 cut(s) 521, 555
NdeII GATC 6 cut(s) 163, 300, 420, 661, 708, 765
NlaIII CATG 6 cut(s) 89, 255, 525, 559, 668, 683
NspI RCATGY 1 cut(s) 255
PctI GAATGC 1 cut(s) 747
PfeI GAWTC 2 cut(s) 287, 720
PflMI CCANNNNNTGG 1 cut(s) 644
PkrI GCNGC 1 cut(s) 826
Psp124BI GAGCTC 1 cut(s) 624
PstNI CAGNNNCTG 1 cut(s) 736
RsaI GTAC 2 cut(s) 158, 256
RsaNI GTAC 2 cut(s) 157, 255
RseI CAYNNNNRTG 1 cut(s) 678
SacI GAGCTC 1 cut(s) 624
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 1 cut(s) 825
Sau3AI GATC 6 cut(s) 163, 300, 420, 661, 708, 765
ScrFI CCNGG 2 cut(s) 398, 439
SduI GDGCHC 2 cut(s) 349, 624
SfaNI GCATC 2 cut(s) 469, 698
SmiI ATTTAAAT 1 cut(s) 189
SmiMI CAYNNNNRTG 1 cut(s) 678
Sse9I AATT 7 cut(s) 190, 219, 293, 315, 694, 740, 842
SspI AATATT 1 cut(s) 94
SspMI CTAG 2 cut(s) 335, 350
SstI GAGCTC 1 cut(s) 624
StyD4I CCNGG 2 cut(s) 396, 437
StyI CCWWGG 2 cut(s) 521, 555
SwaI ATTTAAAT 1 cut(s) 189
TaaI ACNGT 1 cut(s) 197
TaqI TCGA 2 cut(s) 78, 718
TasI AATT 7 cut(s) 190, 219, 293, 315, 694, 740, 842
TatI WGTACW 2 cut(s) 156, 254
TfiI GAWTC 2 cut(s) 287, 720
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TscAI CASTG 1 cut(s) 768
TseI GCWGC 1 cut(s) 824
TspDTI ATGAA 5 cut(s) 455, 662, 666, 668, 746
TspGWI ACGGA 1 cut(s) 701
TspRI CASTG 1 cut(s) 768
Van91I CCANNNNNTGG 1 cut(s) 644
VneI GTGCAC 1 cut(s) 345
XapI RAATTY 1 cut(s) 694
XceI RCATGY 1 cut(s) 255
XspI CTAG 2 cut(s) 335, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.