Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000244.1

Orthogroup ID

OG0008851

Physical Location & Seq

Genomic Coordinates Forward (+)

43848 .. 45890

Gene Structure 2043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000244.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atgagtaagttccaatctaattcaagcaatttcttcaacactagcttctttcttattcttctaccagttttagtatcttcgacctgcacttgtattcaaaagcaagacgaagatcgaaaccaatccaagcagctgatcatatacaaaatagttgcaatcgtttcagttctggtttctggtgccctaggagtctatcttccatttctggtgaagattaacataccaattctccacccggataatgacttctatctcctaatcaaggcctttgcagcaggagtgatcttagcgactggctttgttcatgtgcttcctgatgctcaggagagtttgacaagcccttgcctcagtcaaaagccatggggaaagtttccgttcaccggttttgttgctatggtttcggccattgggacattgatgatggaagctttggctactgggtacaagaagaggtctgctcttagcaaacctcagccattagatggtgatgaagaggcacatcatgttcatggttctgcattggtgttagaatcatcaaattcatcggatgggatccgaaatcgtatcatatctcaggttttggagttgggaattattgtccattcagtgattattggggtatcccttggtgcttgccaaaatctacacacaatcaagcctttggtggcagcattgagtttccatcaattttttgagggcataggacttggtggatgtatctatcaggcaaagttcagccataaaacaatggcagtaatggtgggattcttttccatgaccagcccctgtggaataggtgtgggcatagcaatctccaacacatacaatgagaatagccccacttcactagttgttgaaggactgctattatcagcatctgcagggattctcatttacatggcacttgttgatcttcttgctgctgatttcataaacaacgccaaattgataagcaatcccaagctccaacttggggcaaattttactcttcttctaggagcagggtttatgtcactcttggccaagttgggagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

345

Amino Acids

36.87

Weight (kDa)

7.1

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008851)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12891 FvH4_3g12891 FvH4_3g12891
malus_domestica	MD05G1247400.v1.1 MD16G1052400.v1.1
prunus_persica	Prupe.4G117100_v2.0.a1 Prupe.4G117100_v2.0.a1
pyrus_communis	pycom16g04600
rosa_chinensis	RchiOBHm_Chr5g0020881 RchiOBHm_Chr5g0020981
rosa_laevigata	RLG00000032575
rosa_multiflora	Rmu_co8090108.1_g000001 Rmu_sc0007649.1_g000013 Rmu_ssc0000244.1_g000007
rosa_roxburghii	Rroxscaffold_1G00057490
rosa_rugosa	Rorug05G0063600 Rorug05G0063600
rosa_samantha	Rh5AG153100 Rh5AG153200 Rh5BG152900 Rh5CG165300 Rh5DG152200
rosa_wichuraiana	Rw5G013610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	179
AccB7I	CCANNNNNTGG	1 cut(s)	482
AclWI	GGATC	2 cut(s)	547, 560
AcoI	YGGCCR	2 cut(s)	402, 1020
AcsI	RAATTY	2 cut(s)	538, 979
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	4 cut(s)	262, 380, 482, 973
AgeI	ACCGGT	1 cut(s)	380
AgsI	TTSAA	4 cut(s)	24, 37, 98, 857
AhlI	ACTAGT	1 cut(s)	847
AluBI	AGCT	4 cut(s)	45, 133, 428, 964
AluI	AGCT	4 cut(s)	45, 133, 428, 964
AlwI	GGATC	2 cut(s)	547, 560
AlwNI	CAGNNNCTG	2 cut(s)	786, 878
AoxI	GGCC	3 cut(s)	264, 402, 1020
ApeKI	GCWGC	4 cut(s)	130, 272, 668, 920
ApoI	RAATTY	2 cut(s)	538, 979
AsiGI	ACCGGT	1 cut(s)	380
AspA2I	CCTAGG	1 cut(s)	184
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	3 cut(s)	220, 370, 497
AvrII	CCTAGG	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	184
BalI	TGGCCA	1 cut(s)	1022
BamHI	GGATCC	1 cut(s)	552
BanI	GGYRCC	1 cut(s)	179
BbvCI	CCTCAGC	1 cut(s)	471
BbvI	GCAGC	4 cut(s)	142, 284, 680, 907
BccI	CCATC	4 cut(s)	415, 476, 542, 690
BciVI	GTATCC	1 cut(s)	631
BclI	TGATCA	1 cut(s)	135
BcnI	CCSGG	1 cut(s)	236
BcuI	ACTAGT	1 cut(s)	847
BfaI	CTAG	4 cut(s)	42, 185, 848, 995
BfmI	CTRYAG	1 cut(s)	879
BfuAI	ACCTGC	1 cut(s)	92
BfuI	GTATCC	1 cut(s)	631
BisI	GCNGC	4 cut(s)	131, 273, 669, 921
BlnI	CCTAGG	1 cut(s)	184
BlsI	GCNGC	4 cut(s)	132, 274, 670, 922
Bme1390I	CCNGG	1 cut(s)	236
BmiI	GGNNCC	2 cut(s)	181, 554
BmrFI	CCNGG	1 cut(s)	236
BmrI	ACTGGG	1 cut(s)	447
BmsI	GCATC	2 cut(s)	307, 884
BmuI	ACTGGG	1 cut(s)	447
BplI	GAGNNNNNCTC	2 cut(s)	442, 474
Bpu10I	CCTNAGC	2 cut(s)	321, 471
BpuMI	CCSGG	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	184, 359, 625
BsaWI	WCCGGW	1 cut(s)	380
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bsc4I	CCNNNNNNNGG	4 cut(s)	262, 380, 482, 973
Bse118I	RCCGGY	1 cut(s)	380
Bse1I	ACTGG	3 cut(s)	65, 298, 442
BseDI	CCNNGG	3 cut(s)	184, 359, 625
BseGI	GGATG	2 cut(s)	553, 719
BseLI	CCNNNNNNNGG	4 cut(s)	262, 380, 482, 973
BseMII	CTCAG	4 cut(s)	335, 361, 485, 587
BseNI	ACTGG	3 cut(s)	65, 298, 442
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	4 cut(s)	142, 284, 680, 907
BsgI	GTGCAG	1 cut(s)	70
BshFI	GGCC	3 cut(s)	266, 404, 1022
BshNI	GGYRCC	1 cut(s)	179
BshTI	ACCGGT	1 cut(s)	380
BsiSI	CCGG	2 cut(s)	236, 381
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	4 cut(s)	262, 380, 482, 973
BsmFI	GGGAC	1 cut(s)	424
BsnI	GGCC	3 cut(s)	266, 404, 1022
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	5 cut(s)	112, 135, 282, 552, 910
Bsp19I	CCATGG	1 cut(s)	359
BspANI	GGCC	3 cut(s)	266, 404, 1022
BspCNI	CTCAG	4 cut(s)	334, 360, 484, 586
BspLI	GGNNCC	2 cut(s)	181, 554
BspMAI	CTGCAG	1 cut(s)	883
BspMI	ACCTGC	1 cut(s)	92
BspPI	GGATC	2 cut(s)	547, 560
BspT107I	GGYRCC	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	380
BsrI	ACTGG	3 cut(s)	65, 298, 442
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	3 cut(s)	184, 359, 625
BssMI	GATC	5 cut(s)	112, 135, 282, 552, 910
BssT1I	CCWWGG	3 cut(s)	184, 359, 625
Bst6I	CTCTTC	3 cut(s)	443, 486, 993
BstC8I	GCNNGC	1 cut(s)	634
BstDEI	CTNAG	6 cut(s)	286, 321, 347, 461, 471, 573
BstDSI	CCRYGG	1 cut(s)	359
BstENI	CCTNNNNNAGG	1 cut(s)	260
BstF5I	GGATG	2 cut(s)	553, 719
BstKTI	GATC	5 cut(s)	115, 138, 285, 555, 913
BstMBI	GATC	5 cut(s)	112, 135, 282, 552, 910
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	234
BstSFI	CTRYAG	1 cut(s)	879
BstSLI	GKGCMC	1 cut(s)	184
BstV1I	GCAGC	4 cut(s)	142, 284, 680, 907
BstX2I	RGATCY	1 cut(s)	552
BstYI	RGATCY	1 cut(s)	552
BsuI	GTATCC	1 cut(s)	631
BsuRI	GGCC	3 cut(s)	266, 404, 1022
BtgI	CCRYGG	1 cut(s)	359
BtsCI	GGATG	2 cut(s)	553, 719
BtsIMutI	CAGTG	1 cut(s)	612
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	634
CaiI	CAGNNNCTG	2 cut(s)	786, 878
Cfr10I	RCCGGY	1 cut(s)	380
Csp6I	GTAC	1 cut(s)	442
CspAI	ACCGGT	1 cut(s)	380
CviAII	CATG	6 cut(s)	305, 360, 503, 509, 775, 898
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	6 cut(s)	286, 321, 347, 461, 471, 573
DpnI	GATC	5 cut(s)	114, 137, 284, 554, 912
DpnII	GATC	5 cut(s)	112, 135, 282, 552, 910
EaeI	YGGCCR	2 cut(s)	402, 1020
Eam1104I	CTCTTC	3 cut(s)	443, 486, 993
EarI	CTCTTC	3 cut(s)	443, 486, 993
Eco130I	CCWWGG	3 cut(s)	184, 359, 625
Eco147I	AGGCCT	1 cut(s)	266
EcoNI	CCTNNNNNAGG	1 cut(s)	260
EcoT14I	CCWWGG	3 cut(s)	184, 359, 625
ErhI	CCWWGG	3 cut(s)	184, 359, 625
FaeI	CATG	6 cut(s)	308, 363, 506, 512, 778, 901
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	6 cut(s)	304, 359, 502, 508, 774, 897
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	4 cut(s)	131, 273, 669, 921
FokI	GGATG	2 cut(s)	560, 726
Fsp4HI	GCNGC	4 cut(s)	131, 273, 669, 921
FspBI	CTAG	4 cut(s)	42, 185, 848, 995
GluI	GCNGC	4 cut(s)	131, 273, 669, 921
HaeIII	GGCC	3 cut(s)	266, 404, 1022
HapII	CCGG	2 cut(s)	236, 381
Hin1II	CATG	6 cut(s)	308, 363, 506, 512, 778, 901
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	4 cut(s)	189, 530, 765, 886
HpaII	CCGG	2 cut(s)	236, 381
HphI	GGTGA	3 cut(s)	220, 370, 497
Hpy166II	GTNNAC	1 cut(s)	378
Hpy188I	TCNGA	2 cut(s)	547, 557
Hpy188III	TCNNGA	2 cut(s)	314, 323
Hpy8I	GTNNAC	1 cut(s)	378
HpyAV	CCTTC	1 cut(s)	851
HpyCH4V	TGCA	5 cut(s)	87, 155, 272, 518, 881
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	6 cut(s)	286, 321, 347, 461, 471, 573
Hsp92II	CATG	6 cut(s)	308, 363, 506, 512, 778, 901
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	5 cut(s)	112, 135, 282, 552, 910
LmnI	GCTCC	2 cut(s)	969, 998
Lsp1109I	GCAGC	4 cut(s)	142, 284, 680, 907
LweI	GCATC	2 cut(s)	307, 884
MaeI	CTAG	4 cut(s)	42, 185, 848, 995
MaeIII	GTNAC	1 cut(s)	1011
MalI	GATC	5 cut(s)	114, 137, 284, 554, 912
MboI	GATC	5 cut(s)	112, 135, 282, 552, 910
MflI	RGATCY	1 cut(s)	552
MhlI	GDGCHC	1 cut(s)	184
MlsI	TGGCCA	1 cut(s)	1022
MluCI	AATT	8 cut(s)	19, 28, 225, 538, 591, 686, 944, 979
MluNI	TGGCCA	1 cut(s)	1022
MlyI	GAGTC	1 cut(s)	198
MmeI	TCCRAC	2 cut(s)	840, 991
MnlI	CCTC	5 cut(s)	356, 444, 480, 487, 688
Mox20I	TGGCCA	1 cut(s)	1022
MscI	TGGCCA	1 cut(s)	1022
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	2 cut(s)	507, 896
Msp20I	TGGCCA	1 cut(s)	1022
MspA1I	CMGCKG	1 cut(s)	133
MspI	CCGG	2 cut(s)	236, 381
MspR9I	CCNGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	272
NciI	CCSGG	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	359
NdeII	GATC	5 cut(s)	112, 135, 282, 552, 910
NlaIII	CATG	6 cut(s)	308, 363, 506, 512, 778, 901
NlaIV	GGNNCC	2 cut(s)	181, 554
NmuCI	GTSAC	1 cut(s)	1011
PceI	AGGCCT	1 cut(s)	266
PfeI	GAWTC	3 cut(s)	530, 765, 886
PflMI	CCANNNNNTGG	1 cut(s)	482
PinAI	ACCGGT	1 cut(s)	380
PkrI	GCNGC	4 cut(s)	132, 274, 670, 922
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
PspN4I	GGNNCC	2 cut(s)	181, 554
PstI	CTGCAG	1 cut(s)	883
PstNI	CAGNNNCTG	2 cut(s)	786, 878
PsuI	RGATCY	1 cut(s)	552
PvuII	CAGCTG	1 cut(s)	133
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
RseI	CAYNNNNRTG	2 cut(s)	507, 896
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	4 cut(s)	131, 273, 669, 921
Sau3AI	GATC	5 cut(s)	112, 135, 282, 552, 910
SchI	GAGTC	1 cut(s)	198
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	9 cut(s)	47, 86, 135, 430, 455, 472, 579, 799, 966
SfaNI	GCATC	2 cut(s)	307, 884
SfcI	CTRYAG	1 cut(s)	879
SmiMI	CAYNNNNRTG	2 cut(s)	507, 896
SpeI	ACTAGT	1 cut(s)	847
Sse9I	AATT	8 cut(s)	19, 28, 225, 538, 591, 686, 944, 979
SseBI	AGGCCT	1 cut(s)	266
SspMI	CTAG	4 cut(s)	42, 185, 848, 995
StuI	AGGCCT	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	3 cut(s)	184, 359, 625
TaqI	TCGA	2 cut(s)	80, 115
TasI	AATT	8 cut(s)	19, 28, 225, 538, 591, 686, 944, 979
TfiI	GAWTC	3 cut(s)	530, 765, 886
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	612
TseFI	GTSAC	1 cut(s)	1011
TseI	GCWGC	4 cut(s)	130, 272, 668, 920
Tsp45I	GTSAC	1 cut(s)	1011
TspDTI	ATGAA	5 cut(s)	293, 497, 504, 531, 919
TspGWI	ACGGA	1 cut(s)	363
TspRI	CASTG	1 cut(s)	612
Van91I	CCANNNNNTGG	1 cut(s)	482
XagI	CCTNNNNNAGG	1 cut(s)	260
XapI	RAATTY	2 cut(s)	538, 979
XmaJI	CCTAGG	1 cut(s)	184
XspI	CTAG	4 cut(s)	42, 185, 848, 995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.