Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8090108.1

Orthogroup ID

OG0008851

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 592

Gene Structure 592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8090108.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 323 bp

ggctttctcttggagcttcaaacaatacttgcaccattaaaggtcttgtagctgccctttgcttccatcaaatgtttgaaggcatgggccttggtggttgcattctccaggctgagttcaagttcatgaagaaggtagtactggtgttcttcttctcagcaacaaccccatctggaattgcactgggaatggccctgtcaaaaatgtacaaagaaaacagtccaagtgcattagtgacagtaggactgctgaatgcttcttcagctgggctcctcatctacatggctttggttgatcttctctctgctgacttcatgggtcca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0012505 GO:0015075 GO:0015318 GO:0015675 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070838 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071577 GO:0071731 GO:0071732 GO:0071944 GO:0072509 GO:0072511 GO:0097366 GO:0097708 GO:0098655 GO:0098660 GO:0098662 GO:0098791 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

107

Amino Acids

11.2

Weight (kDa)

7.91

Isoelectric Point (pI)

29.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008851)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12891 FvH4_3g12891 FvH4_3g12891
malus_domestica	MD05G1247400.v1.1 MD16G1052400.v1.1
prunus_persica	Prupe.4G117100_v2.0.a1 Prupe.4G117100_v2.0.a1
pyrus_communis	pycom16g04600
rosa_chinensis	RchiOBHm_Chr5g0020881 RchiOBHm_Chr5g0020981
rosa_laevigata	RLG00000032575
rosa_multiflora	Rmu_co8090108.1_g000001 Rmu_sc0007649.1_g000013 Rmu_ssc0000244.1_g000007
rosa_roxburghii	Rroxscaffold_1G00057490
rosa_rugosa	Rorug05G0063600 Rorug05G0063600
rosa_samantha	Rh5AG153100 Rh5AG153200 Rh5BG152900 Rh5CG165300 Rh5DG152200
rosa_wichuraiana	Rw5G013610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	245
AfaI	GTAC	2 cut(s)	140, 208
AgsI	TTSAA	3 cut(s)	20, 79, 120
AjnI	CCWGG	1 cut(s)	107
AluBI	AGCT	3 cut(s)	16, 52, 265
AluI	AGCT	3 cut(s)	16, 52, 265
AoxI	GGCC	2 cut(s)	87, 191
ApeKI	GCWGC	1 cut(s)	52
AspS9I	GGNCC	3 cut(s)	87, 192, 319
AvaII	GGWCC	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	39
BccI	CCATC	2 cut(s)	74, 177
BciT130I	CCWGG	1 cut(s)	109
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
BmcAI	AGTACT	1 cut(s)	140
Bme1390I	CCNGG	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	319
BmgT120I	GGNCC	3 cut(s)	87, 192, 319
BmiI	GGNNCC	2 cut(s)	271, 320
BmrFI	CCNGG	1 cut(s)	109
BmrI	ACTGGG	1 cut(s)	193
BmuI	ACTGGG	1 cut(s)	193
BpmI	CTGGAG	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	90
Bse1I	ACTGG	2 cut(s)	146, 188
BseBI	CCWGG	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	90
BseMII	CTCAG	2 cut(s)	104, 170
BseNI	ACTGG	2 cut(s)	146, 188
BseRI	GAGGAG	1 cut(s)	262
BseXI	GCAGC	1 cut(s)	39
BseYI	CCCAGC	1 cut(s)	265
BshFI	GGCC	2 cut(s)	89, 193
BsmI	GAATGC	2 cut(s)	101, 258
BsnI	GGCC	2 cut(s)	89, 193
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp1407I	TGTACA	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	294
BspANI	GGCC	2 cut(s)	89, 193
BspCNI	CTCAG	2 cut(s)	105, 169
BspHI	TCATGA	1 cut(s)	125
BspLI	GGNNCC	2 cut(s)	271, 320
BsrGI	TGTACA	1 cut(s)	206
BsrI	ACTGG	2 cut(s)	146, 188
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	220, 240
BstAUI	TGTACA	1 cut(s)	206
BstDEI	CTNAG	2 cut(s)	113, 156
BstKTI	GATC	1 cut(s)	297
BstMBI	GATC	1 cut(s)	294
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNI	CCWGG	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	39
BsuRI	GGCC	2 cut(s)	89, 193
BtsIMutI	CAGTG	1 cut(s)	181
CciI	TCATGA	1 cut(s)	125
Cfr13I	GGNCC	3 cut(s)	87, 192, 319
Csp6I	GTAC	2 cut(s)	139, 207
CviAII	CATG	4 cut(s)	84, 126, 282, 315
CviJI	RGCY	9 cut(s)	3, 16, 52, 89, 112, 193, 265, 270, 286
CviKI_1	RGCY	9 cut(s)	3, 16, 52, 89, 112, 193, 265, 270, 286
CviQI	GTAC	2 cut(s)	139, 207
DdeI	CTNAG	2 cut(s)	113, 156
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	4 cut(s)	87, 129, 285, 318
FaiI	YATR	4 cut(s)	85, 127, 283, 316
FatI	CATG	4 cut(s)	83, 125, 281, 314
Fnu4HI	GCNGC	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	53
GsaI	CCCAGC	1 cut(s)	269
GsuI	CTGGAG	1 cut(s)	91
HaeIII	GGCC	2 cut(s)	89, 193
Hin1II	CATG	4 cut(s)	87, 129, 285, 318
Hpy188III	TCNNGA	2 cut(s)	126, 173
HpyAV	CCTTC	2 cut(s)	73, 126
HpyCH4III	ACNGT	2 cut(s)	220, 240
HpyCH4V	TGCA	4 cut(s)	32, 101, 181, 229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	2 cut(s)	113, 156
Hsp92II	CATG	4 cut(s)	87, 129, 285, 318
Kzo9I	GATC	1 cut(s)	294
LmnI	GCTCC	2 cut(s)	13, 275
LpnPI	CCDG	7 cut(s)	94, 121, 127, 158, 169, 208, 251
Lsp1109I	GCAGC	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	234
MalI	GATC	1 cut(s)	296
MboI	GATC	1 cut(s)	294
MboII	GAAGA	5 cut(s)	141, 141, 144, 251, 289
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	1 cut(s)	176
MnlI	CCTC	1 cut(s)	283
MseI	TTAA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	280
MspA1I	CMGCKG	1 cut(s)	265
MspR9I	CCNGG	1 cut(s)	109
Mva1269I	GAATGC	2 cut(s)	101, 258
MvaI	CCWGG	1 cut(s)	109
MwoI	GCNNNNNNNGC	1 cut(s)	262
NdeII	GATC	1 cut(s)	294
NlaIII	CATG	4 cut(s)	87, 129, 285, 318
NlaIV	GGNNCC	2 cut(s)	271, 320
NmuCI	GTSAC	1 cut(s)	234
PagI	TCATGA	1 cut(s)	125
PctI	GAATGC	2 cut(s)	101, 258
PkrI	GCNGC	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	107
PspFI	CCCAGC	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	2 cut(s)	271, 320
PspPI	GGNCC	3 cut(s)	87, 192, 319
PvuII	CAGCTG	1 cut(s)	265
RsaI	GTAC	2 cut(s)	140, 208
RsaNI	GTAC	2 cut(s)	139, 207
RseI	CAYNNNNRTG	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	1 cut(s)	294
Sau96I	GGNCC	3 cut(s)	87, 192, 319
ScaI	AGTACT	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	5 cut(s)	18, 45, 54, 137, 267
SinI	GGWCC	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	280
Sse9I	AATT	1 cut(s)	176
StyD4I	CCNGG	1 cut(s)	107
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	220, 240
TasI	AATT	1 cut(s)	176
TatI	WGTACW	2 cut(s)	138, 206
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	1 cut(s)	188
TseFI	GTSAC	1 cut(s)	234
TseI	GCWGC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	234
TspDTI	ATGAA	3 cut(s)	114, 142, 303
TspRI	CASTG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	319
ZrmI	AGTACT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.