Rh5AG153100

zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0008851
Physical Location & Seq
Forward (+)
16117848 .. 16118665
818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG153100.1

Sequence Viewer

Length: 576 bp
ATGATTCTGGTTTCTGGTGCCCTAGGAGTCTATCTTCCATTTCTGGTGAAGATTAACATACCATTTCTCCACCCGGATAATGACTTCTATCTCCTAATCAAGGCCTTTGCAGCAGGAGTGATCTTAGCGACTGGCTTTGTTCATGTGCTTCCTGATGCTCAGGGGAGTTTGACAAGCCCTTGCCTCAGTCAAAAGCCATGGGGAAAGTTTCCGTTCACCGGTTTTGTTGCTATGGTTTCGGCCATTGGGACATTGATGATGGAAGCTTTGGCTACTGGGTACAAGAAGAGGTCTGCTCTTAGCAAACCTCAGCCATTAGATGGTGATGAAGAGGCACATCATGTTCATGGTTCTGCATTGGTGTTAGAATCATCAAATTCATCGGATAGGATCCGAAATCGTATCATATCTCAGGTTTTGGAGTTGGGAATTATTGTCCATTCAGTGATTATTGGGGTATCCCTTGGTGCTTGCCAAAATCTACACACAATCAAGCCTTTGGTGGCAGCATTGAGTTTCCATCAATTTTTTGAGGGCATAGGACTTGGTGGATGTATCTATCAGGTACTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Zip

Protein Analysis

191

Amino Acids

20.47

Weight (kDa)

6.69

Isoelectric Point (pI)

27.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 2 - 188 4.8e-39 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AccB7I CCANNNNNTGG 1 cut(s) 320
AclWI GGATC 2 cut(s) 385, 398
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 1 cut(s) 376
AfaI GTAC 2 cut(s) 281, 567
AfiI CCNNNNNNNGG 3 cut(s) 100, 218, 320
AgeI ACCGGT 1 cut(s) 218
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
AlwI GGATC 2 cut(s) 385, 398
AoxI GGCC 2 cut(s) 102, 240
ApeKI GCWGC 2 cut(s) 110, 506
ApoI RAATTY 1 cut(s) 376
AsiGI ACCGGT 1 cut(s) 218
AspA2I CCTAGG 1 cut(s) 22
AsuC2I CCSGG 1 cut(s) 74
AsuHPI GGTGA 3 cut(s) 58, 208, 335
AvrII CCTAGG 1 cut(s) 22
BaeGI GKGCMC 1 cut(s) 22
BamHI GGATCC 1 cut(s) 390
BanI GGYRCC 1 cut(s) 17
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 2 cut(s) 122, 518
BccI CCATC 3 cut(s) 253, 314, 528
BciVI GTATCC 1 cut(s) 469
BcnI CCSGG 1 cut(s) 74
BfaI CTAG 1 cut(s) 23
BfuI GTATCC 1 cut(s) 469
BisI GCNGC 2 cut(s) 111, 507
BlnI CCTAGG 1 cut(s) 22
BlsI GCNGC 2 cut(s) 112, 508
Bme1390I CCNGG 1 cut(s) 74
BmiI GGNNCC 2 cut(s) 19, 392
BmrFI CCNGG 1 cut(s) 74
BmrI ACTGGG 1 cut(s) 285
BmsI GCATC 1 cut(s) 145
BmuI ACTGGG 1 cut(s) 285
BplI GAGNNNNNCTC 2 cut(s) 280, 312
Bpu10I CCTNAGC 2 cut(s) 159, 309
BpuMI CCSGG 1 cut(s) 74
BsaJI CCNNGG 3 cut(s) 22, 197, 463
BsaWI WCCGGW 1 cut(s) 218
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 218, 320
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 2 cut(s) 136, 280
BseDI CCNNGG 3 cut(s) 22, 197, 463
BseGI GGATG 1 cut(s) 557
BseLI CCNNNNNNNGG 3 cut(s) 100, 218, 320
BseMII CTCAG 4 cut(s) 173, 199, 323, 425
BseNI ACTGG 2 cut(s) 136, 280
BseSI GKGCMC 1 cut(s) 22
BseXI GCAGC 2 cut(s) 122, 518
BshFI GGCC 2 cut(s) 104, 242
BshNI GGYRCC 1 cut(s) 17
BshTI ACCGGT 1 cut(s) 218
BsiSI CCGG 2 cut(s) 74, 219
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 3 cut(s) 100, 218, 320
BsmFI GGGAC 1 cut(s) 262
BsnI GGCC 2 cut(s) 104, 242
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 2 cut(s) 120, 390
Bsp19I CCATGG 1 cut(s) 197
BspANI GGCC 2 cut(s) 104, 242
BspCNI CTCAG 4 cut(s) 172, 198, 322, 424
BspLI GGNNCC 2 cut(s) 19, 392
BspPI GGATC 2 cut(s) 385, 398
BspT107I GGYRCC 1 cut(s) 17
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 2 cut(s) 136, 280
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 3 cut(s) 22, 197, 463
BssMI GATC 2 cut(s) 120, 390
BssT1I CCWWGG 3 cut(s) 22, 197, 463
Bst6I CTCTTC 2 cut(s) 281, 324
BstC8I GCNNGC 1 cut(s) 472
BstDEI CTNAG 6 cut(s) 124, 159, 185, 299, 309, 411
BstDSI CCRYGG 1 cut(s) 197
BstENI CCTNNNNNAGG 1 cut(s) 98
BstF5I GGATG 1 cut(s) 557
BstKTI GATC 2 cut(s) 123, 393
BstMBI GATC 2 cut(s) 120, 390
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 72
BstSLI GKGCMC 1 cut(s) 22
BstV1I GCAGC 2 cut(s) 122, 518
BstX2I RGATCY 1 cut(s) 390
BstYI RGATCY 1 cut(s) 390
BsuI GTATCC 1 cut(s) 469
BsuRI GGCC 2 cut(s) 104, 242
BtgI CCRYGG 1 cut(s) 197
BtsCI GGATG 1 cut(s) 557
BtsIMutI CAGTG 1 cut(s) 450
Cac8I GCNNGC 1 cut(s) 472
Cfr10I RCCGGY 1 cut(s) 218
Csp6I GTAC 2 cut(s) 280, 566
CspAI ACCGGT 1 cut(s) 218
CviAII CATG 4 cut(s) 143, 198, 341, 347
CviJI RGCY 9 cut(s) 104, 135, 177, 196, 242, 266, 272, 313, 496
CviKI_1 RGCY 9 cut(s) 104, 135, 177, 196, 242, 266, 272, 313, 496
CviQI GTAC 2 cut(s) 280, 566
DdeI CTNAG 6 cut(s) 124, 159, 185, 299, 309, 411
DpnI GATC 2 cut(s) 122, 392
DpnII GATC 2 cut(s) 120, 390
EaeI YGGCCR 1 cut(s) 240
Eam1104I CTCTTC 2 cut(s) 281, 324
EarI CTCTTC 2 cut(s) 281, 324
Eco130I CCWWGG 3 cut(s) 22, 197, 463
Eco147I AGGCCT 1 cut(s) 104
EcoNI CCTNNNNNAGG 1 cut(s) 98
EcoT14I CCWWGG 3 cut(s) 22, 197, 463
ErhI CCWWGG 3 cut(s) 22, 197, 463
FaeI CATG 4 cut(s) 146, 201, 344, 350
FaiI YATR 8 cut(s) 59, 144, 199, 233, 342, 348, 407, 539
FaqI GGGAC 1 cut(s) 262
FatI CATG 4 cut(s) 142, 197, 340, 346
Fnu4HI GCNGC 2 cut(s) 111, 507
FokI GGATG 1 cut(s) 564
Fsp4HI GCNGC 2 cut(s) 111, 507
FspBI CTAG 1 cut(s) 23
GluI GCNGC 2 cut(s) 111, 507
HaeIII GGCC 2 cut(s) 104, 242
HapII CCGG 2 cut(s) 74, 219
Hin1II CATG 4 cut(s) 146, 201, 344, 350
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 3 cut(s) 4, 27, 368
HpaII CCGG 2 cut(s) 74, 219
HphI GGTGA 3 cut(s) 58, 208, 335
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 2 cut(s) 385, 395
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 1 cut(s) 216
HpyCH4V TGCA 2 cut(s) 110, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 6 cut(s) 124, 159, 185, 299, 309, 411
Hsp92II CATG 4 cut(s) 146, 201, 344, 350
Kzo9I GATC 2 cut(s) 120, 390
Lsp1109I GCAGC 2 cut(s) 122, 518
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 23
MalI GATC 2 cut(s) 122, 392
MboI GATC 2 cut(s) 120, 390
MboII GAAGA 4 cut(s) 26, 61, 298, 341
MflI RGATCY 1 cut(s) 390
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 3 cut(s) 376, 429, 524
MlyI GAGTC 1 cut(s) 36
MnlI CCTC 5 cut(s) 194, 282, 318, 325, 526
MseI TTAA 1 cut(s) 54
MslI CAYNNNNRTG 1 cut(s) 345
MspI CCGG 2 cut(s) 74, 219
MspR9I CCNGG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 110
NciI CCSGG 1 cut(s) 74
NcoI CCATGG 1 cut(s) 197
NdeII GATC 2 cut(s) 120, 390
NlaIII CATG 4 cut(s) 146, 201, 344, 350
NlaIV GGNNCC 2 cut(s) 19, 392
PceI AGGCCT 1 cut(s) 104
PfeI GAWTC 2 cut(s) 4, 368
PflMI CCANNNNNTGG 1 cut(s) 320
PinAI ACCGGT 1 cut(s) 218
PkrI GCNGC 2 cut(s) 112, 508
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 19, 392
PsuI RGATCY 1 cut(s) 390
RsaI GTAC 2 cut(s) 281, 567
RsaNI GTAC 2 cut(s) 280, 566
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 2 cut(s) 111, 507
Sau3AI GATC 2 cut(s) 120, 390
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 22
SetI ASST 5 cut(s) 268, 293, 310, 417, 567
SfaNI GCATC 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 345
Sse9I AATT 3 cut(s) 376, 429, 524
SseBI AGGCCT 1 cut(s) 104
SspMI CTAG 1 cut(s) 23
StuI AGGCCT 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 3 cut(s) 22, 197, 463
TasI AATT 3 cut(s) 376, 429, 524
TfiI GAWTC 2 cut(s) 4, 368
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 1 cut(s) 450
TseI GCWGC 2 cut(s) 110, 506
TspDTI ATGAA 4 cut(s) 131, 335, 342, 369
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 1 cut(s) 450
Van91I CCANNNNNTGG 1 cut(s) 320
XagI CCTNNNNNAGG 1 cut(s) 98
XapI RAATTY 1 cut(s) 376
XmaJI CCTAGG 1 cut(s) 22
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.