RchiOBHm_Chr5g0020881

zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0008851
Physical Location & Seq
Forward (+)
15164815 .. 15166198
1384 bp
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UTR
Exon/CDS
Intron
PRQ30095

Sequence Viewer

Length: 534 bp
ATGGATCCGTCAGACGAAATGGACCTAAACTGTTTTTCATGTCAAAGTATGAGGAATAACAAGTATGTTCAGGTTTTGGAGTTGGGAATTATTGTCCATTCAGTGATTATTGGGGTATCCCTTGGTGCTTGTCAAAATCTACACACAATCAAGCCATTGGTGACAGCAGTGAGTTTCCATCAATTTTTTGAGGGCATAGGACTTGGTGGATGTATCTATCAGGCAAAGTTCAGCCATAAAACAATGGCAGTAATGGTGGGATTCTTTTCCATGACCAGCCCCTGTGGAATAGGTGTGGGCATAGCAATCTCCAACACATACAATGAGAACAGCCCCACTTCACTAGTTGTTGAAGGACTGCTCTTATCAGCATCTGCAGGGATTCTTATTTACATGGTACTTGTTGATCTTCTTGCTGCTGATTTCATAAACAATGCCAAATTGATAAGCAATCCCAAGCTCCAACTTGGGGCTAATTTTACTCTTCTTCTAGGAGCAGGGTTTATGTCACTCTTGGCCAAGTTGGGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Zip

Protein Analysis

177

Amino Acids

18.84

Weight (kDa)

5.71

Isoelectric Point (pI)

20.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 20 - 173 3.5e-46 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 516
AfaI GTAC 1 cut(s) 399
AfiI CCNNNNNNNGG 1 cut(s) 469
AgsI TTSAA 1 cut(s) 353
AhlI ACTAGT 1 cut(s) 343
AluBI AGCT 1 cut(s) 460
AluI AGCT 1 cut(s) 460
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 2 cut(s) 282, 374
AoxI GGCC 1 cut(s) 516
ApeKI GCWGC 1 cut(s) 416
AspS9I GGNCC 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 172
AvaII GGWCC 1 cut(s) 22
BalI TGGCCA 1 cut(s) 518
BamHI GGATCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 403
BccI CCATC 1 cut(s) 186
BciVI GTATCC 1 cut(s) 127
BcuI ACTAGT 1 cut(s) 343
BfaI CTAG 2 cut(s) 344, 491
BfmI CTRYAG 1 cut(s) 375
BfuI GTATCC 1 cut(s) 127
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
Bme18I GGWCC 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 469
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 1 cut(s) 215
BseLI CCNNNNNNNGG 1 cut(s) 469
BseXI GCAGC 1 cut(s) 403
BshFI GGCC 1 cut(s) 518
BslI CCNNNNNNNGG 1 cut(s) 469
BsnI GGCC 1 cut(s) 518
Bsp143I GATC 2 cut(s) 4, 406
BspANI GGCC 1 cut(s) 518
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 379
BspPI GGATC 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 2 cut(s) 4, 406
BssT1I CCWWGG 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 489
BstF5I GGATG 1 cut(s) 215
BstKTI GATC 2 cut(s) 7, 409
BstMBI GATC 2 cut(s) 4, 406
BstSFI CTRYAG 1 cut(s) 375
BstV1I GCAGC 1 cut(s) 403
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuI GTATCC 1 cut(s) 127
BsuRI GGCC 1 cut(s) 518
BtsCI GGATG 1 cut(s) 215
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 2 cut(s) 108, 174
CaiI CAGNNNCTG 2 cut(s) 282, 374
Cfr13I GGNCC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 398
CviAII CATG 3 cut(s) 39, 271, 394
CviJI RGCY 7 cut(s) 154, 234, 279, 333, 460, 473, 518
CviKI_1 RGCY 7 cut(s) 154, 234, 279, 333, 460, 473, 518
CviQI GTAC 1 cut(s) 398
DpnI GATC 2 cut(s) 6, 408
DpnII GATC 2 cut(s) 4, 406
EaeI YGGCCR 1 cut(s) 516
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Eco130I CCWWGG 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 3 cut(s) 42, 274, 397
FatI CATG 3 cut(s) 38, 270, 393
Fnu4HI GCNGC 1 cut(s) 417
FokI GGATG 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 417
FspBI CTAG 2 cut(s) 344, 491
GluI GCNGC 1 cut(s) 417
HaeIII GGCC 1 cut(s) 518
Hin1II CATG 3 cut(s) 42, 274, 397
HinfI GANTC 2 cut(s) 261, 382
HphI GGTGA 1 cut(s) 172
Hpy188I TCNGA 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 347
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 1 cut(s) 377
Hsp92II CATG 3 cut(s) 42, 274, 397
Kzo9I GATC 2 cut(s) 4, 406
LmnI GCTCC 2 cut(s) 465, 494
LpnPI CCDG 6 cut(s) 56, 206, 289, 295, 363, 483
Lsp1109I GCAGC 1 cut(s) 403
LweI GCATC 1 cut(s) 380
MaeI CTAG 2 cut(s) 344, 491
MaeIII GTNAC 2 cut(s) 160, 507
MalI GATC 2 cut(s) 6, 408
MboI GATC 2 cut(s) 4, 406
MboII GAAGA 3 cut(s) 401, 476, 479
MflI RGATCY 1 cut(s) 4
MlsI TGGCCA 1 cut(s) 518
MluCI AATT 4 cut(s) 87, 182, 440, 475
MluNI TGGCCA 1 cut(s) 518
MmeI TCCRAC 2 cut(s) 336, 487
MnlI CCTC 2 cut(s) 45, 184
Mox20I TGGCCA 1 cut(s) 518
MscI TGGCCA 1 cut(s) 518
Msp20I TGGCCA 1 cut(s) 518
NdeII GATC 2 cut(s) 4, 406
NlaIII CATG 3 cut(s) 42, 274, 397
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 160, 507
PfeI GAWTC 2 cut(s) 261, 382
PkrI GCNGC 1 cut(s) 418
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 22
PstI CTGCAG 1 cut(s) 379
PstNI CAGNNNCTG 2 cut(s) 282, 374
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 399
RsaNI GTAC 1 cut(s) 398
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 2 cut(s) 4, 406
Sau96I GGNCC 1 cut(s) 22
SetI ASST 4 cut(s) 27, 75, 295, 462
SfaNI GCATC 1 cut(s) 380
SfcI CTRYAG 1 cut(s) 375
SinI GGWCC 1 cut(s) 22
SpeI ACTAGT 1 cut(s) 343
Sse9I AATT 4 cut(s) 87, 182, 440, 475
SspMI CTAG 2 cut(s) 344, 491
StyI CCWWGG 1 cut(s) 121
TaaI ACNGT 1 cut(s) 32
TasI AATT 4 cut(s) 87, 182, 440, 475
TfiI GAWTC 2 cut(s) 261, 382
TscAI CASTG 2 cut(s) 108, 174
TseFI GTSAC 2 cut(s) 160, 507
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 2 cut(s) 160, 507
TspDTI ATGAA 2 cut(s) 27, 415
TspRI CASTG 2 cut(s) 108, 174
VpaK11BI GGWCC 1 cut(s) 22
XspI CTAG 2 cut(s) 344, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.