Rh5BG152900

zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0008851
Physical Location & Seq
Forward (+)
15655222 .. 15658385
3164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG152900.1

Sequence Viewer

Length: 738 bp
ATGAGTAAGTTCCAATCTAATTCAAGCAATTTCTTCAACACTAGCTTCTTTCTTATTCTTCTACCAGTTTTAGTATCTTCGACCTGCACATGTATTCAAAAGCAAGACGAAGATCGAAACCAATCCAAGCAACTGATCATATACAAAATAGTTGCAATCGTTTCAGTTCTGGTTTCTGGTGCCCTAGGAGTCTGTCTTCCATTTCTGGTGAAGATTAACATACCATGTCTTCACCCGGATAATGACTTCTATCTCCTAATCAAGGCCTTTGCAGCAGGAGTGATCTTAGCGACTGGCTTTGTTCATGTGCTTCCTGATGCTCAGGAGAGTTTGACAAGCCCTTGCCTCAGTCAAAAGCCATGGGGAAAGTTTCCGTTCACCGGTTTTGTTGCTATGGTTTCGGCCATTGGGACATTGATGATGGAAGCTTTGGCTACTGGGTACAAGAAGAGATCTGCTCTTAGCAAACCTCAGCCATTAGATGGTGATGAAGAGACACATCATGTTCATGGTTCTGCATTGGTGTTAGAATCATCAAATTCATCGGATAGGATCCGAAATCGTATCATATCTCAGGTTTTGGAGTTGGGAATTATTGTCCATTCAGTGATTATTGGGGTATCCCTTGGTGCTTGTCAAAATCTACACACAATCAAGCCTTTGGTGGCAGCATTGAGTTTCCATCAATTTTTTGAGGGCATAGGACTTGGTGGATGTATCTATCAGGTACTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Zip

Protein Analysis

245

Amino Acids

26.58

Weight (kDa)

7.07

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 48 - 242 3.4e-42 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 92
AccB1I GGYRCC 1 cut(s) 179
AccB7I CCANNNNNTGG 1 cut(s) 482
AclWI GGATC 2 cut(s) 547, 560
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 1 cut(s) 538
AfaI GTAC 2 cut(s) 443, 729
AfiI CCNNNNNNNGG 3 cut(s) 262, 380, 482
AflIII ACRYGT 1 cut(s) 89
AgeI ACCGGT 1 cut(s) 380
AgsI TTSAA 3 cut(s) 24, 37, 98
AluBI AGCT 2 cut(s) 45, 428
AluI AGCT 2 cut(s) 45, 428
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 2 cut(s) 547, 560
AoxI GGCC 2 cut(s) 264, 402
ApeKI GCWGC 2 cut(s) 272, 668
ApoI RAATTY 1 cut(s) 538
AsiGI ACCGGT 1 cut(s) 380
AspA2I CCTAGG 1 cut(s) 184
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 4 cut(s) 220, 224, 370, 497
AvrII CCTAGG 1 cut(s) 184
BaeGI GKGCMC 1 cut(s) 184
BamHI GGATCC 1 cut(s) 552
BanI GGYRCC 1 cut(s) 179
BbsI GAAGAC 2 cut(s) 188, 221
BbvCI CCTCAGC 1 cut(s) 471
BbvI GCAGC 2 cut(s) 284, 680
BccI CCATC 3 cut(s) 415, 476, 690
BciVI GTATCC 1 cut(s) 631
BclI TGATCA 1 cut(s) 135
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 2 cut(s) 42, 185
BfuAI ACCTGC 1 cut(s) 92
BfuI GTATCC 1 cut(s) 631
BglII AGATCT 1 cut(s) 452
BisI GCNGC 2 cut(s) 273, 669
BlnI CCTAGG 1 cut(s) 184
BlsI GCNGC 2 cut(s) 274, 670
Bme1390I CCNGG 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 181, 554
BmrFI CCNGG 1 cut(s) 236
BmrI ACTGGG 1 cut(s) 447
BmsI GCATC 1 cut(s) 307
BmuI ACTGGG 1 cut(s) 447
BpiI GAAGAC 2 cut(s) 188, 221
BplI GAGNNNNNCTC 2 cut(s) 442, 474
Bpu10I CCTNAGC 2 cut(s) 321, 471
BpuMI CCSGG 1 cut(s) 236
BsaJI CCNNGG 3 cut(s) 184, 359, 625
BsaWI WCCGGW 1 cut(s) 380
Bsc4I CCNNNNNNNGG 3 cut(s) 262, 380, 482
Bse118I RCCGGY 1 cut(s) 380
Bse1I ACTGG 3 cut(s) 65, 298, 442
BseDI CCNNGG 3 cut(s) 184, 359, 625
BseGI GGATG 1 cut(s) 719
BseLI CCNNNNNNNGG 3 cut(s) 262, 380, 482
BseMII CTCAG 4 cut(s) 335, 361, 485, 587
BseNI ACTGG 3 cut(s) 65, 298, 442
BseSI GKGCMC 1 cut(s) 184
BseXI GCAGC 2 cut(s) 284, 680
BsgI GTGCAG 1 cut(s) 70
BshFI GGCC 2 cut(s) 266, 404
BshNI GGYRCC 1 cut(s) 179
BshTI ACCGGT 1 cut(s) 380
BsiSI CCGG 2 cut(s) 236, 381
BslFI GGGAC 1 cut(s) 424
BslI CCNNNNNNNGG 3 cut(s) 262, 380, 482
BsmAI GTCTC 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 424
BsnI GGCC 2 cut(s) 266, 404
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 5 cut(s) 112, 135, 282, 452, 552
Bsp19I CCATGG 1 cut(s) 359
BspANI GGCC 2 cut(s) 266, 404
BspCNI CTCAG 4 cut(s) 334, 360, 484, 586
BspLI GGNNCC 2 cut(s) 181, 554
BspMI ACCTGC 1 cut(s) 92
BspPI GGATC 2 cut(s) 547, 560
BspT107I GGYRCC 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 380
BsrI ACTGG 3 cut(s) 65, 298, 442
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 3 cut(s) 184, 359, 625
BssMI GATC 5 cut(s) 112, 135, 282, 452, 552
BssT1I CCWWGG 3 cut(s) 184, 359, 625
Bst6I CTCTTC 2 cut(s) 443, 486
BstDEI CTNAG 6 cut(s) 286, 321, 347, 461, 471, 573
BstDSI CCRYGG 1 cut(s) 359
BstENI CCTNNNNNAGG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 719
BstKTI GATC 5 cut(s) 115, 138, 285, 455, 555
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 5 cut(s) 112, 135, 282, 452, 552
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 234
BstSLI GKGCMC 1 cut(s) 184
BstV1I GCAGC 2 cut(s) 284, 680
BstV2I GAAGAC 2 cut(s) 188, 221
BstX2I RGATCY 2 cut(s) 452, 552
BstYI RGATCY 2 cut(s) 452, 552
BsuI GTATCC 1 cut(s) 631
BsuRI GGCC 2 cut(s) 266, 404
BtgI CCRYGG 1 cut(s) 359
BtsCI GGATG 1 cut(s) 719
BtsIMutI CAGTG 1 cut(s) 612
BveI ACCTGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 380
Csp6I GTAC 2 cut(s) 442, 728
CspAI ACCGGT 1 cut(s) 380
CviAII CATG 6 cut(s) 90, 225, 305, 360, 503, 509
CviQI GTAC 2 cut(s) 442, 728
DdeI CTNAG 6 cut(s) 286, 321, 347, 461, 471, 573
DpnI GATC 5 cut(s) 114, 137, 284, 454, 554
DpnII GATC 5 cut(s) 112, 135, 282, 452, 552
EaeI YGGCCR 1 cut(s) 402
Eam1104I CTCTTC 2 cut(s) 443, 486
EarI CTCTTC 2 cut(s) 443, 486
Eco130I CCWWGG 3 cut(s) 184, 359, 625
Eco147I AGGCCT 1 cut(s) 266
EcoNI CCTNNNNNAGG 1 cut(s) 260
EcoT14I CCWWGG 3 cut(s) 184, 359, 625
ErhI CCWWGG 3 cut(s) 184, 359, 625
FaeI CATG 6 cut(s) 93, 228, 308, 363, 506, 512
FaqI GGGAC 1 cut(s) 424
FatI CATG 6 cut(s) 89, 224, 304, 359, 502, 508
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 273, 669
FokI GGATG 1 cut(s) 726
Fsp4HI GCNGC 2 cut(s) 273, 669
FspBI CTAG 2 cut(s) 42, 185
GluI GCNGC 2 cut(s) 273, 669
HaeIII GGCC 2 cut(s) 266, 404
HapII CCGG 2 cut(s) 236, 381
Hin1II CATG 6 cut(s) 93, 228, 308, 363, 506, 512
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 2 cut(s) 189, 530
HpaII CCGG 2 cut(s) 236, 381
HphI GGTGA 4 cut(s) 220, 224, 370, 497
Hpy166II GTNNAC 1 cut(s) 378
Hpy188I TCNGA 2 cut(s) 547, 557
Hpy188III TCNNGA 2 cut(s) 314, 323
Hpy8I GTNNAC 1 cut(s) 378
HpyCH4V TGCA 4 cut(s) 87, 155, 272, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 6 cut(s) 286, 321, 347, 461, 471, 573
Hsp92II CATG 6 cut(s) 93, 228, 308, 363, 506, 512
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 5 cut(s) 112, 135, 282, 452, 552
Lsp1109I GCAGC 2 cut(s) 284, 680
LweI GCATC 1 cut(s) 307
MaeI CTAG 2 cut(s) 42, 185
MalI GATC 5 cut(s) 114, 137, 284, 454, 554
MboI GATC 5 cut(s) 112, 135, 282, 452, 552
MboII GAAGA 9 cut(s) 25, 50, 69, 122, 188, 221, 223, 460, 503
MflI RGATCY 2 cut(s) 452, 552
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 5 cut(s) 19, 28, 538, 591, 686
MlyI GAGTC 1 cut(s) 198
MnlI CCTC 3 cut(s) 356, 480, 688
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 507
MspI CCGG 2 cut(s) 236, 381
MspR9I CCNGG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 272
NciI CCSGG 1 cut(s) 236
NcoI CCATGG 1 cut(s) 359
NdeII GATC 5 cut(s) 112, 135, 282, 452, 552
NlaIII CATG 6 cut(s) 93, 228, 308, 363, 506, 512
NlaIV GGNNCC 2 cut(s) 181, 554
NspI RCATGY 1 cut(s) 93
PceI AGGCCT 1 cut(s) 266
PciI ACATGT 1 cut(s) 89
PfeI GAWTC 1 cut(s) 530
PflMI CCANNNNNTGG 1 cut(s) 482
PinAI ACCGGT 1 cut(s) 380
PkrI GCNGC 2 cut(s) 274, 670
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PscI ACATGT 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 181, 554
PsuI RGATCY 2 cut(s) 452, 552
RsaI GTAC 2 cut(s) 443, 729
RsaNI GTAC 2 cut(s) 442, 728
RseI CAYNNNNRTG 1 cut(s) 507
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 2 cut(s) 273, 669
Sau3AI GATC 5 cut(s) 112, 135, 282, 452, 552
SchI GAGTC 1 cut(s) 198
ScrFI CCNGG 1 cut(s) 236
SduI GDGCHC 1 cut(s) 184
SetI ASST 6 cut(s) 47, 86, 430, 472, 579, 729
SfaNI GCATC 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 507
Sse9I AATT 5 cut(s) 19, 28, 538, 591, 686
SseBI AGGCCT 1 cut(s) 266
SspMI CTAG 2 cut(s) 42, 185
StuI AGGCCT 1 cut(s) 266
StyD4I CCNGG 1 cut(s) 234
StyI CCWWGG 3 cut(s) 184, 359, 625
TaqI TCGA 2 cut(s) 80, 115
TasI AATT 5 cut(s) 19, 28, 538, 591, 686
TfiI GAWTC 1 cut(s) 530
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 612
TseI GCWGC 2 cut(s) 272, 668
TspDTI ATGAA 4 cut(s) 293, 497, 504, 531
TspGWI ACGGA 1 cut(s) 363
TspRI CASTG 1 cut(s) 612
Van91I CCANNNNNTGG 1 cut(s) 482
XagI CCTNNNNNAGG 1 cut(s) 260
XapI RAATTY 1 cut(s) 538
XceI RCATGY 1 cut(s) 93
XmaJI CCTAGG 1 cut(s) 184
XspI CTAG 2 cut(s) 42, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.