Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008851

Physical Location & Seq

Genomic Coordinates Reverse (-)

3753274 .. 3753739

Gene Structure 466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1052400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCAGGTATTGGAACTAGCGGTTGTAGTGCACTCTGTAGTGATTGGATTATCAATGGATGCATCTGATAACCCATGCACAATCAGACCACTCATTGCTGCCCTTTGTTTCCATCAATTATTTGAAGGTCTGGGCCTTGGTGGATGCATAGTACAGGTTGAATATGGTATCAAGACGAAAGCAATAATTATGTTCTTCTCAGCCACACCACCATTGGGGATAGTACTAGGGAATTCACTGTCAAATATATACTGCGATGACAGTCCGACGGCTCTGATTGTGGTAGGGCTGCTAAATGCAGGGCTGCTCAACTATATGGCGCTGGTGGATCTCCTAGAAGCTGATTTCATGGGGACTAAACTACAAGCAAACGTGAAGCTCCAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

130

Amino Acids

13.71

Weight (kDa)

4.59

Isoelectric Point (pI)

22.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	2 - 126	4.3e-27	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008851)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12891 FvH4_3g12891 FvH4_3g12891
malus_domestica	MD05G1247400.v1.1 MD16G1052400.v1.1
prunus_persica	Prupe.4G117100_v2.0.a1 Prupe.4G117100_v2.0.a1
pyrus_communis	pycom16g04600
rosa_chinensis	RchiOBHm_Chr5g0020881 RchiOBHm_Chr5g0020981
rosa_laevigata	RLG00000032575
rosa_multiflora	Rmu_co8090108.1_g000001 Rmu_sc0007649.1_g000013 Rmu_ssc0000244.1_g000007
rosa_roxburghii	Rroxscaffold_1G00057490
rosa_rugosa	Rorug05G0063600 Rorug05G0063600
rosa_samantha	Rh5AG153100 Rh5AG153200 Rh5BG152900 Rh5CG165300 Rh5DG152200
rosa_wichuraiana	Rw5G013610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	232
AfaI	GTAC	2 cut(s)	153, 225
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	2 cut(s)	125, 161
AluBI	AGCT	2 cut(s)	341, 379
AluI	AGCT	2 cut(s)	341, 379
Alw21I	GWGCWC	1 cut(s)	33
Alw44I	GTGCAC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	336
AoxI	GGCC	1 cut(s)	133
ApaLI	GTGCAC	1 cut(s)	29
ApeKI	GCWGC	3 cut(s)	98, 289, 304
ApoI	RAATTY	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	322
AspS9I	GGNCC	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	3 cut(s)	85, 276, 291
BccI	CCATC	1 cut(s)	120
BceAI	ACGGC	1 cut(s)	285
BfaI	CTAG	3 cut(s)	17, 227, 335
BfmI	CTRYAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	323
BisI	GCNGC	3 cut(s)	99, 290, 305
BlsI	GCNGC	3 cut(s)	100, 291, 306
BmcAI	AGTACT	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	133
BmsI	GCATC	3 cut(s)	49, 71, 134
BsaJI	CCNNGG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	2 cut(s)	64, 149
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	213
BseSI	GKGCMC	1 cut(s)	33
BseXI	GCAGC	3 cut(s)	85, 276, 291
BshFI	GGCC	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	1 cut(s)	212
BspPI	GGATC	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	1 cut(s)	328
BssT1I	CCWWGG	1 cut(s)	136
Bst4CI	ACNGT	2 cut(s)	240, 263
BstDEI	CTNAG	1 cut(s)	199
BstF5I	GGATG	2 cut(s)	64, 149
BstH2I	RGCGCY	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	1 cut(s)	331
BstMBI	GATC	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	36
BstSLI	GKGCMC	1 cut(s)	33
BstV1I	GCAGC	3 cut(s)	85, 276, 291
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	135
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	64, 149
BtsIMutI	CAGTG	1 cut(s)	236
CfoI	GCGC	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	133
Csp6I	GTAC	2 cut(s)	152, 224
CviAII	CATG	2 cut(s)	75, 349
CviJI	RGCY	7 cut(s)	135, 203, 272, 289, 304, 341, 379
CviKI_1	RGCY	7 cut(s)	135, 203, 272, 289, 304, 341, 379
CviQI	GTAC	2 cut(s)	152, 224
DdeI	CTNAG	1 cut(s)	199
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	136
EcoRI	GAATTC	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	136
EcoT22I	ATGCAT	2 cut(s)	64, 149
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	2 cut(s)	78, 352
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	2 cut(s)	74, 348
Fnu4HI	GCNGC	3 cut(s)	99, 290, 305
FokI	GGATG	2 cut(s)	71, 156
Fsp4HI	GCNGC	3 cut(s)	99, 290, 305
FspBI	CTAG	3 cut(s)	17, 227, 335
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	3 cut(s)	99, 290, 305
HaeII	RGCGCY	1 cut(s)	323
HaeIII	GGCC	1 cut(s)	135
HhaI	GCGC	1 cut(s)	322
Hin1II	CATG	2 cut(s)	78, 352
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	4 cut(s)	67, 86, 267, 276
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	1 cut(s)	271
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	2 cut(s)	240, 263
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	6 cut(s)	4, 31, 62, 78, 147, 299
HpyF3I	CTNAG	1 cut(s)	199
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	2 cut(s)	78, 352
HspAI	GCGC	1 cut(s)	320
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	1 cut(s)	384
LpnPI	CCDG	4 cut(s)	116, 140, 285, 308
Lsp1109I	GCAGC	3 cut(s)	85, 276, 291
LweI	GCATC	3 cut(s)	49, 71, 134
MaeI	CTAG	3 cut(s)	17, 227, 335
MaeII	ACGT	1 cut(s)	372
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	1 cut(s)	187
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	3 cut(s)	116, 186, 232
MmeI	TCCRAC	1 cut(s)	290
Mph1103I	ATGCAT	2 cut(s)	64, 149
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	2 cut(s)	78, 352
NsiI	ATGCAT	2 cut(s)	64, 149
PkrI	GCNGC	3 cut(s)	100, 291, 306
PspPI	GGNCC	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	328
RsaI	GTAC	2 cut(s)	153, 225
RsaNI	GTAC	2 cut(s)	152, 224
SatI	GCNGC	3 cut(s)	99, 290, 305
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	1 cut(s)	133
ScaI	AGTACT	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	6 cut(s)	9, 130, 159, 343, 375, 381
SfaNI	GCATC	3 cut(s)	49, 71, 134
SfcI	CTRYAG	1 cut(s)	36
Sse9I	AATT	3 cut(s)	116, 186, 232
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	3 cut(s)	17, 227, 335
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	2 cut(s)	240, 263
TaiI	ACGT	1 cut(s)	375
TasI	AATT	3 cut(s)	116, 186, 232
TatI	WGTACW	2 cut(s)	151, 223
TscAI	CASTG	1 cut(s)	243
TseI	GCWGC	3 cut(s)	98, 289, 304
TspDTI	ATGAA	1 cut(s)	337
TspRI	CASTG	1 cut(s)	243
VneI	GTGCAC	1 cut(s)	29
XapI	RAATTY	1 cut(s)	232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XspI	CTAG	3 cut(s)	17, 227, 335
ZrmI	AGTACT	1 cut(s)	225
Zsp2I	ATGCAT	2 cut(s)	64, 149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.