RLG00000032575

zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008851
Physical Location & Seq
Forward (+)
16670077 .. 16672103
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032575

Sequence Viewer

Length: 1038 bp
ATGAGTAAGTCCCAATCTAATTCAAGCAATTTCTTCAACACTACCTTCTTTCTTATTCGTCTACCAGTTTTAGTATCTTCGACCTGCAGATGTATTCAAAAGCAAGACGAAGATCGAAACCAATCCAAGCAACTGATCATATACAAAATAGTTGCAATCGTTTCAGTTCTGGTTTCTGGTGCCCTAGGAATCTGTCTTCCATTTCTGGTGAAGATTAACATACCATTTCTTCACCCGGATTGTGACTTCTATCTCCTAATCAAGGCCTTTGCAGCAGGAGTGATCTTAGCGACTGGCTTTGTTCATGTGCTTCCTGATGCTCAGGAGAGTTTGACAAGCCCTTGCCTCAGTCAAAAGCCATGGGGAAAGTTTCCGTTCACCGGTTTTGTTGCTATGGTTTCGGCCATTGGGACATTGATGATAGAAGCTTTGGCTACTGGGTACAAGAAGAGATCTGCTCTTAGCAAACCTCAGCCATTAGATGGTGATGAAGAGACACATCATGTTCATGGTTCTGCATTGGTGTTAGAATCATCAAATTCATCGGATAGGATCCGAAATCGTATCATATCTCAGGTTTTGGAGTTGGGAATTATTGTCCATTCAGTGATTATTGGGGTATCCCTTGGTGCTTGTCAAAATCTACACACAATCAAGCCTTTGGTGGCAGCATTGAGTTTCCATCAATTTTTTGAGGGCATAGGACTTGGTGGATGTATCTATCAGGCAAAGTTCAGCCATAAAACTATGGCAGTAATGGTGGGATTCTTTTCCATGACCAGCCCCTGTGGAATAGGTGTGGGCATAGCAATCTCCAACACATACAACGAGAATAGCCCCACTTCACTAGTTGTTGAAGGACTACTCTTATCAGCATCTGCAGGGATTCTTATTTACATGGCACTTGTTGATCTTCTTGCCGCTGATTTCATAAACAATGCCAAATTGATAAGCAATCCCAAGCTCCAACTTGGGGCTAATTTTACTCTTCTTCTAGGAGCGGGGTTTATGTCACTCTTGGCCAAATTGGGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Zip

Protein Analysis

346

Amino Acids

37.01

Weight (kDa)

8.38

Isoelectric Point (pI)

34.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 48 - 341 2e-72 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 92
AccB1I GGYRCC 1 cut(s) 179
AccB7I CCANNNNNTGG 1 cut(s) 482
AccBSI CCGCTC 1 cut(s) 1001
AccI GTMKAC 1 cut(s) 61
AciI CCGC 2 cut(s) 921, 1001
AclWI GGATC 2 cut(s) 547, 560
AcoI YGGCCR 2 cut(s) 402, 1020
AcsI RAATTY 1 cut(s) 538
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 4 cut(s) 262, 380, 482, 973
AgeI ACCGGT 1 cut(s) 380
AgsI TTSAA 4 cut(s) 24, 37, 98, 857
AhlI ACTAGT 1 cut(s) 847
AluBI AGCT 2 cut(s) 428, 964
AluI AGCT 2 cut(s) 428, 964
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 2 cut(s) 547, 560
AlwNI CAGNNNCTG 2 cut(s) 786, 878
AoxI GGCC 3 cut(s) 264, 402, 1020
ApeKI GCWGC 2 cut(s) 272, 668
ApoI RAATTY 1 cut(s) 538
AsiGI ACCGGT 1 cut(s) 380
AspA2I CCTAGG 1 cut(s) 184
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 4 cut(s) 220, 224, 370, 497
AvrII CCTAGG 1 cut(s) 184
BaeGI GKGCMC 1 cut(s) 184
BalI TGGCCA 1 cut(s) 1022
BamHI GGATCC 1 cut(s) 552
BanI GGYRCC 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 188
BbvCI CCTCAGC 1 cut(s) 471
BbvI GCAGC 2 cut(s) 284, 680
BccI CCATC 2 cut(s) 476, 690
BciVI GTATCC 1 cut(s) 631
BclI TGATCA 1 cut(s) 135
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 488
BcuI ACTAGT 1 cut(s) 847
BfaI CTAG 3 cut(s) 185, 848, 995
BfmI CTRYAG 2 cut(s) 85, 879
BfuAI ACCTGC 1 cut(s) 92
BfuI GTATCC 1 cut(s) 631
BglII AGATCT 1 cut(s) 452
BisI GCNGC 3 cut(s) 273, 669, 921
BlnI CCTAGG 1 cut(s) 184
BlsI GCNGC 3 cut(s) 274, 670, 922
Bme1390I CCNGG 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 181, 554
BmrFI CCNGG 1 cut(s) 236
BmrI ACTGGG 1 cut(s) 447
BmsI GCATC 2 cut(s) 307, 884
BmuI ACTGGG 1 cut(s) 447
BpiI GAAGAC 1 cut(s) 188
BplI GAGNNNNNCTC 2 cut(s) 442, 474
Bpu10I CCTNAGC 2 cut(s) 321, 471
BpuMI CCSGG 1 cut(s) 236
BsaJI CCNNGG 3 cut(s) 184, 359, 625
BsaWI WCCGGW 1 cut(s) 380
Bsc4I CCNNNNNNNGG 4 cut(s) 262, 380, 482, 973
Bse118I RCCGGY 1 cut(s) 380
Bse1I ACTGG 3 cut(s) 65, 298, 442
BseDI CCNNGG 3 cut(s) 184, 359, 625
BseGI GGATG 1 cut(s) 719
BseLI CCNNNNNNNGG 4 cut(s) 262, 380, 482, 973
BseMII CTCAG 4 cut(s) 335, 361, 485, 587
BseNI ACTGG 3 cut(s) 65, 298, 442
BseSI GKGCMC 1 cut(s) 184
BseXI GCAGC 2 cut(s) 284, 680
BshFI GGCC 3 cut(s) 266, 404, 1022
BshNI GGYRCC 1 cut(s) 179
BshTI ACCGGT 1 cut(s) 380
BsiSI CCGG 2 cut(s) 236, 381
BslFI GGGAC 1 cut(s) 424
BslI CCNNNNNNNGG 4 cut(s) 262, 380, 482, 973
BsmAI GTCTC 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 424
BsnI GGCC 3 cut(s) 266, 404, 1022
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 6 cut(s) 112, 135, 282, 452, 552, 910
Bsp19I CCATGG 1 cut(s) 359
BspACI CCGC 2 cut(s) 921, 1001
BspANI GGCC 3 cut(s) 266, 404, 1022
BspCNI CTCAG 4 cut(s) 334, 360, 484, 586
BspLI GGNNCC 2 cut(s) 181, 554
BspMAI CTGCAG 2 cut(s) 89, 883
BspMI ACCTGC 1 cut(s) 92
BspPI GGATC 2 cut(s) 547, 560
BspT107I GGYRCC 1 cut(s) 179
BsrBI CCGCTC 1 cut(s) 1001
BsrFI RCCGGY 1 cut(s) 380
BsrI ACTGG 3 cut(s) 65, 298, 442
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 3 cut(s) 184, 359, 625
BssMI GATC 6 cut(s) 112, 135, 282, 452, 552, 910
BssT1I CCWWGG 3 cut(s) 184, 359, 625
Bst6I CTCTTC 3 cut(s) 443, 486, 993
BstDEI CTNAG 6 cut(s) 286, 321, 347, 461, 471, 573
BstDSI CCRYGG 1 cut(s) 359
BstENI CCTNNNNNAGG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 719
BstKTI GATC 6 cut(s) 115, 138, 285, 455, 555, 913
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 6 cut(s) 112, 135, 282, 452, 552, 910
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 234
BstSFI CTRYAG 2 cut(s) 85, 879
BstSLI GKGCMC 1 cut(s) 184
BstV1I GCAGC 2 cut(s) 284, 680
BstV2I GAAGAC 1 cut(s) 188
BstX2I RGATCY 2 cut(s) 452, 552
BstYI RGATCY 2 cut(s) 452, 552
BsuI GTATCC 1 cut(s) 631
BsuRI GGCC 3 cut(s) 266, 404, 1022
BtgI CCRYGG 1 cut(s) 359
BtsCI GGATG 1 cut(s) 719
BtsIMutI CAGTG 1 cut(s) 612
BveI ACCTGC 1 cut(s) 92
CaiI CAGNNNCTG 2 cut(s) 786, 878
Cfr10I RCCGGY 1 cut(s) 380
Csp6I GTAC 1 cut(s) 442
CspAI ACCGGT 1 cut(s) 380
CviAII CATG 6 cut(s) 305, 360, 503, 509, 775, 898
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 6 cut(s) 286, 321, 347, 461, 471, 573
DpnI GATC 6 cut(s) 114, 137, 284, 454, 554, 912
DpnII GATC 6 cut(s) 112, 135, 282, 452, 552, 910
EaeI YGGCCR 2 cut(s) 402, 1020
Eam1104I CTCTTC 3 cut(s) 443, 486, 993
EarI CTCTTC 3 cut(s) 443, 486, 993
Eco130I CCWWGG 3 cut(s) 184, 359, 625
Eco147I AGGCCT 1 cut(s) 266
EcoNI CCTNNNNNAGG 1 cut(s) 260
EcoT14I CCWWGG 3 cut(s) 184, 359, 625
ErhI CCWWGG 3 cut(s) 184, 359, 625
FaeI CATG 6 cut(s) 308, 363, 506, 512, 778, 901
FaqI GGGAC 1 cut(s) 424
FatI CATG 6 cut(s) 304, 359, 502, 508, 774, 897
FauI CCCGC 1 cut(s) 994
FbaI TGATCA 1 cut(s) 135
FblI GTMKAC 1 cut(s) 61
Fnu4HI GCNGC 3 cut(s) 273, 669, 921
FokI GGATG 1 cut(s) 726
Fsp4HI GCNGC 3 cut(s) 273, 669, 921
FspBI CTAG 3 cut(s) 185, 848, 995
GluI GCNGC 3 cut(s) 273, 669, 921
HaeIII GGCC 3 cut(s) 266, 404, 1022
HapII CCGG 2 cut(s) 236, 381
Hin1II CATG 6 cut(s) 308, 363, 506, 512, 778, 901
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 4 cut(s) 189, 530, 765, 886
HpaII CCGG 2 cut(s) 236, 381
HphI GGTGA 4 cut(s) 220, 224, 370, 497
Hpy166II GTNNAC 2 cut(s) 62, 378
Hpy188I TCNGA 2 cut(s) 547, 557
Hpy188III TCNNGA 2 cut(s) 314, 323
Hpy8I GTNNAC 2 cut(s) 62, 378
HpyAV CCTTC 2 cut(s) 55, 851
HpyCH4V TGCA 5 cut(s) 87, 155, 272, 518, 881
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 6 cut(s) 286, 321, 347, 461, 471, 573
Hsp92II CATG 6 cut(s) 308, 363, 506, 512, 778, 901
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 6 cut(s) 112, 135, 282, 452, 552, 910
LmnI GCTCC 2 cut(s) 969, 998
Lsp1109I GCAGC 2 cut(s) 284, 680
LweI GCATC 2 cut(s) 307, 884
MaeI CTAG 3 cut(s) 185, 848, 995
MaeIII GTNAC 2 cut(s) 242, 1011
MalI GATC 6 cut(s) 114, 137, 284, 454, 554, 912
MbiI CCGCTC 1 cut(s) 1001
MboI GATC 6 cut(s) 112, 135, 282, 452, 552, 910
MflI RGATCY 2 cut(s) 452, 552
MhlI GDGCHC 1 cut(s) 184
MlsI TGGCCA 1 cut(s) 1022
MluCI AATT 8 cut(s) 19, 28, 538, 591, 686, 944, 979, 1025
MluNI TGGCCA 1 cut(s) 1022
MmeI TCCRAC 2 cut(s) 840, 991
MnlI CCTC 3 cut(s) 356, 480, 688
Mox20I TGGCCA 1 cut(s) 1022
MscI TGGCCA 1 cut(s) 1022
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 507
Msp20I TGGCCA 1 cut(s) 1022
MspA1I CMGCKG 1 cut(s) 923
MspI CCGG 2 cut(s) 236, 381
MspR9I CCNGG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 272
NciI CCSGG 1 cut(s) 236
NcoI CCATGG 1 cut(s) 359
NdeII GATC 6 cut(s) 112, 135, 282, 452, 552, 910
NlaIII CATG 6 cut(s) 308, 363, 506, 512, 778, 901
NlaIV GGNNCC 2 cut(s) 181, 554
NmuCI GTSAC 2 cut(s) 242, 1011
PceI AGGCCT 1 cut(s) 266
PfeI GAWTC 4 cut(s) 189, 530, 765, 886
PflMI CCANNNNNTGG 1 cut(s) 482
PinAI ACCGGT 1 cut(s) 380
PkrI GCNGC 3 cut(s) 274, 670, 922
PspN4I GGNNCC 2 cut(s) 181, 554
PstI CTGCAG 2 cut(s) 89, 883
PstNI CAGNNNCTG 2 cut(s) 786, 878
PsuI RGATCY 2 cut(s) 452, 552
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
RseI CAYNNNNRTG 1 cut(s) 507
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 3 cut(s) 273, 669, 921
Sau3AI GATC 6 cut(s) 112, 135, 282, 452, 552, 910
ScrFI CCNGG 1 cut(s) 236
SduI GDGCHC 1 cut(s) 184
SetI ASST 7 cut(s) 47, 86, 430, 472, 579, 799, 966
SfaNI GCATC 2 cut(s) 307, 884
SfcI CTRYAG 2 cut(s) 85, 879
SmiMI CAYNNNNRTG 1 cut(s) 507
SpeI ACTAGT 1 cut(s) 847
Sse9I AATT 8 cut(s) 19, 28, 538, 591, 686, 944, 979, 1025
SseBI AGGCCT 1 cut(s) 266
SsiI CCGC 2 cut(s) 921, 1001
SspMI CTAG 3 cut(s) 185, 848, 995
StuI AGGCCT 1 cut(s) 266
StyD4I CCNGG 1 cut(s) 234
StyI CCWWGG 3 cut(s) 184, 359, 625
TaqI TCGA 2 cut(s) 80, 115
TasI AATT 8 cut(s) 19, 28, 538, 591, 686, 944, 979, 1025
TauI GCSGC 1 cut(s) 923
TfiI GAWTC 4 cut(s) 189, 530, 765, 886
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 612
TseFI GTSAC 2 cut(s) 242, 1011
TseI GCWGC 2 cut(s) 272, 668
Tsp45I GTSAC 2 cut(s) 242, 1011
TspDTI ATGAA 5 cut(s) 293, 497, 504, 531, 919
TspGWI ACGGA 1 cut(s) 363
TspRI CASTG 1 cut(s) 612
Van91I CCANNNNNTGG 1 cut(s) 482
XagI CCTNNNNNAGG 1 cut(s) 260
XapI RAATTY 1 cut(s) 538
XmaJI CCTAGG 1 cut(s) 184
XmiI GTMKAC 1 cut(s) 61
XspI CTAG 3 cut(s) 185, 848, 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.