FvH4_3g21950

DDRGK domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008682
Physical Location & Seq
Forward (+)
15010420 .. 15013963
3544 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21950.t1

Sequence Viewer

Length: 897 bp
ATGGAGGAAATGCTCGCCGTGATCATCTCCATGTTCCTCGTCCTGGCCTTAATTCCACTCTACCTATGGAAACGCCGTCAGGATTCTAGGTCGCCCAAAGATCGCGAAGACGAGCCTCAGGTTGCTCAGAGAGAGGCTGTGGTGCGTCCGGCCGGTAATCTCCGGATGCGGCGGAGGCCGGCTGCTGGAGCTAGCACGTCTGCCGCGGCGGCGGCACCTATAGAAGAAGCTGCTGATGGAAGTGATGATGAAGGTGTTGAGGATGAGACGTATGAAGCCAAAGCTTCAAGGAAAAAGGAAAAGAAGCGTCAAGAGCGGGAAGCACAGCGCCAAGCTGAACAAGCTGCACGGGACTCAAGGCAAACAAAACAAGATCGCTATGCGGAAATGCGAAGGAAGAAAGATGAGGAGCGGGAGGCACAAGAACGTCAGCTGGAAGAAGAAGCCAAGGCTCTAAAAGCCAGGGAGGAGGAAGCTGCTGCATTAGAGTTTGAGAAGTGGAAAGGAGAATTTTCCATAGATGCTGAAGGTACTACAGAGAATGAAGTGCAAGATGGACATCAGGATTTGCTATCTACTTTTGTGGAATACATAAAGAAACATAAATGTGTTCCCTTGGAAGATCTTGCTGCTGAATTTAAGTTACGGACTCAGGAATGCATCAACCGGATCAACTCTCTGGAAAGTATGGGTCGACTTTCTGGTGTCATGGATGACAGAGGGAAATATATATACATATCCCAAGAAGAGATGCAAGCCGTGGCGGACTATATTAAGCGTCAAGGGAGGGTTAGCATTGCACATCTTGCTAGCAAGTCTAACCAGTTCATTGACCTGGAGCCAAAAGCCCAGTTCGTTGAAGAAATCAGTATTGTTGAGGAAATTGCTGCCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDRGK

Protein Analysis

299

Amino Acids

34.08

Weight (kDa)

5.11

Isoelectric Point (pI)

58.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DDRGK PF09756 94 - 278 1.2e-52 DDRGK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 214
AccBSI CCGCTC 2 cut(s) 316, 412
AccI GTMKAC 1 cut(s) 694
AccII CGCG 2 cut(s) 105, 206
AccIII TCCGGA 1 cut(s) 162
AclWI GGATC 1 cut(s) 677
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 2 cut(s) 509, 635
AcuI CTGAAG 1 cut(s) 546
AfaI GTAC 1 cut(s) 532
AfiI CCNNNNNNNGG 2 cut(s) 43, 185
AgsI TTSAA 2 cut(s) 288, 860
AjiI CACGTC 1 cut(s) 198
AjnI CCWGG 3 cut(s) 42, 461, 834
AluBI AGCT 7 cut(s) 191, 230, 284, 335, 344, 433, 476
AluI AGCT 7 cut(s) 191, 230, 284, 335, 344, 433, 476
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 1 cut(s) 677
Aor13HI TCCGGA 1 cut(s) 162
AoxI GGCC 3 cut(s) 45, 150, 176
ApeKI GCWGC 7 cut(s) 182, 230, 344, 476, 479, 629, 887
ApoI RAATTY 2 cut(s) 509, 635
AspLEI GCGC 1 cut(s) 330
AsuNHI GCTAGC 2 cut(s) 191, 809
AxyI CCTNAGG 1 cut(s) 117
BanI GGYRCC 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 114
BbvI GCAGC 7 cut(s) 169, 217, 331, 463, 466, 616, 874
BccI CCATC 2 cut(s) 230, 548
BceAI ACGGC 3 cut(s) 2, 60, 743
BciT130I CCWGG 3 cut(s) 44, 463, 836
BclI TGATCA 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 3 cut(s) 87, 192, 810
BfmI CTRYAG 2 cut(s) 219, 534
BfoI RGCGCY 1 cut(s) 331
BglI GCCNNNNNGGC 1 cut(s) 209
BglII AGATCT 1 cut(s) 622
Bme1390I CCNGG 3 cut(s) 44, 463, 836
BmgBI CACGTC 1 cut(s) 198
BmiI GGNNCC 2 cut(s) 216, 840
BmrFI CCNGG 3 cut(s) 44, 463, 836
BmrI ACTGGG 1 cut(s) 844
BmsI GCATC 4 cut(s) 156, 511, 669, 741
BmtI GCTAGC 2 cut(s) 195, 813
BmuI ACTGGG 1 cut(s) 844
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 2 cut(s) 207, 857
BpuEI CTTGAG 1 cut(s) 340
BsaBI GATNNNNATC 1 cut(s) 558
BsaJI CCNNGG 5 cut(s) 204, 447, 462, 615, 759
BsaWI WCCGGW 2 cut(s) 162, 666
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 185
Bse118I RCCGGY 2 cut(s) 152, 178
Bse1I ACTGG 2 cut(s) 823, 850
Bse21I CCTNAGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 795
Bse8I GATNNNNATC 1 cut(s) 558
BseAI TCCGGA 1 cut(s) 162
BseBI CCWGG 3 cut(s) 44, 463, 836
BseDI CCNNGG 5 cut(s) 204, 447, 462, 615, 759
BseGI GGATG 3 cut(s) 171, 268, 718
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 2 cut(s) 43, 185
BseMI GCAATG 1 cut(s) 795
BseMII CTCAG 3 cut(s) 131, 140, 665
BseNI ACTGG 2 cut(s) 823, 850
BseRI GAGGAG 2 cut(s) 422, 482
BseX3I CGGCCG 1 cut(s) 150
BseXI GCAGC 7 cut(s) 169, 217, 331, 463, 466, 616, 874
BsgI GTGCAG 1 cut(s) 330
Bsh1236I CGCG 2 cut(s) 105, 206
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 3 cut(s) 47, 152, 178
BshNI GGYRCC 1 cut(s) 214
BsiEI CGRYCG 1 cut(s) 153
BsiSI CCGG 5 cut(s) 149, 153, 163, 179, 667
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 2 cut(s) 43, 185
BsmAI GTCTC 1 cut(s) 260
BsmBI CGTCTC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 365
BsmI GAATGC 1 cut(s) 662
BsnI GGCC 3 cut(s) 47, 152, 178
Bsp13I TCCGGA 1 cut(s) 162
Bsp143I GATC 5 cut(s) 21, 100, 373, 622, 669
Bsp68I TCGCGA 1 cut(s) 105
BspANI GGCC 3 cut(s) 47, 152, 178
BspCNI CTCAG 3 cut(s) 130, 139, 664
BspEI TCCGGA 1 cut(s) 162
BspFNI CGCG 2 cut(s) 105, 206
BspLI GGNNCC 2 cut(s) 216, 840
BspOI GCTAGC 2 cut(s) 195, 813
BspPI GGATC 1 cut(s) 677
BspT107I GGYRCC 1 cut(s) 214
BsrBI CCGCTC 2 cut(s) 316, 412
BsrDI GCAATG 1 cut(s) 795
BsrFI RCCGGY 2 cut(s) 152, 178
BsrI ACTGG 2 cut(s) 823, 850
BssAI RCCGGY 2 cut(s) 152, 178
BssECI CCNNGG 5 cut(s) 204, 447, 462, 615, 759
BssMI GATC 5 cut(s) 21, 100, 373, 622, 669
BssT1I CCWWGG 2 cut(s) 447, 615
Bst2UI CCWGG 3 cut(s) 44, 463, 836
Bst6I CTCTTC 1 cut(s) 741
BstAPI GCANNNNNTGC 1 cut(s) 806
BstC8I GCNNGC 5 cut(s) 15, 180, 193, 756, 811
BstDEI CTNAG 4 cut(s) 117, 126, 651, 894
BstDSI CCRYGG 2 cut(s) 204, 759
BstF5I GGATG 3 cut(s) 171, 268, 718
BstFNI CGCG 2 cut(s) 105, 206
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 5 cut(s) 24, 103, 376, 625, 672
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 5 cut(s) 21, 100, 373, 622, 669
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 8 cut(s) 175, 188, 209, 212, 313, 341, 458, 806
BstNI CCWGG 3 cut(s) 44, 463, 836
BstSCI CCNGG 3 cut(s) 42, 461, 834
BstSFI CTRYAG 2 cut(s) 219, 534
BstUI CGCG 2 cut(s) 105, 206
BstV1I GCAGC 7 cut(s) 169, 217, 331, 463, 466, 616, 874
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 622
BstYI RGATCY 1 cut(s) 622
BstZI CGGCCG 1 cut(s) 150
Bsu36I CCTNAGG 1 cut(s) 117
BsuRI GGCC 3 cut(s) 47, 152, 178
BtgI CCRYGG 2 cut(s) 204, 759
BtrI CACGTC 1 cut(s) 198
BtsCI GGATG 3 cut(s) 171, 268, 718
BtuMI TCGCGA 1 cut(s) 105
Cac8I GCNNGC 5 cut(s) 15, 180, 193, 756, 811
CfoI GCGC 1 cut(s) 330
Cfr10I RCCGGY 2 cut(s) 152, 178
Cfr42I CCGCGG 1 cut(s) 207
CseI GACGC 3 cut(s) 134, 296, 767
Csp6I GTAC 1 cut(s) 531
CviAII CATG 2 cut(s) 31, 709
CviQI GTAC 1 cut(s) 531
DdeI CTNAG 4 cut(s) 117, 126, 651, 894
DpnI GATC 5 cut(s) 23, 102, 375, 624, 671
DpnII GATC 5 cut(s) 21, 100, 373, 622, 669
EaeI YGGCCR 1 cut(s) 150
EagI CGGCCG 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 741
EarI CTCTTC 1 cut(s) 741
EciI GGCGGA 2 cut(s) 187, 779
EclXI CGGCCG 1 cut(s) 150
Eco130I CCWWGG 2 cut(s) 447, 615
Eco52I CGGCCG 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 546
Eco81I CCTNAGG 1 cut(s) 117
EcoRII CCWGG 3 cut(s) 42, 461, 834
EcoT14I CCWWGG 2 cut(s) 447, 615
EcoT22I ATGCAT 1 cut(s) 662
ErhI CCWWGG 2 cut(s) 447, 615
Esp3I CGTCTC 1 cut(s) 260
FaeI CATG 2 cut(s) 34, 712
FaqI GGGAC 1 cut(s) 365
FatI CATG 2 cut(s) 30, 708
FauI CCCGC 2 cut(s) 309, 405
FbaI TGATCA 1 cut(s) 21
FblI GTMKAC 1 cut(s) 694
FokI GGATG 3 cut(s) 178, 275, 725
FspBI CTAG 3 cut(s) 87, 192, 810
GlaI GCGC 1 cut(s) 329
GsuI CTGGAG 2 cut(s) 207, 857
HaeII RGCGCY 1 cut(s) 331
HaeIII GGCC 3 cut(s) 47, 152, 178
HapII CCGG 5 cut(s) 149, 153, 163, 179, 667
HgaI GACGC 3 cut(s) 134, 296, 767
HhaI GCGC 1 cut(s) 330
Hin1II CATG 2 cut(s) 34, 712
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HincII GTYRAC 1 cut(s) 695
HindII GTYRAC 1 cut(s) 695
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 3 cut(s) 83, 353, 649
HpaII CCGG 5 cut(s) 149, 153, 163, 179, 667
Hpy166II GTNNAC 1 cut(s) 695
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 7 cut(s) 80, 104, 163, 311, 563, 653, 680
Hpy8I GTNNAC 1 cut(s) 695
HpyAV CCTTC 3 cut(s) 245, 387, 521
HpyCH4IV ACGT 3 cut(s) 197, 269, 427
HpyCH4V TGCA 6 cut(s) 347, 482, 550, 660, 754, 800
HpyF10VI GCNNNNNNNGC 8 cut(s) 175, 188, 209, 212, 313, 341, 458, 806
HpyF3I CTNAG 4 cut(s) 117, 126, 651, 894
HpySE526I ACGT 3 cut(s) 197, 269, 427
Hsp92II CATG 2 cut(s) 34, 712
HspAI GCGC 1 cut(s) 328
Kpn2I TCCGGA 1 cut(s) 162
KroI GCCGGC 1 cut(s) 178
KroNI GCCGGC 1 cut(s) 180
Ksp22I TGATCA 1 cut(s) 21
KspI CCGCGG 1 cut(s) 207
Kzo9I GATC 5 cut(s) 21, 100, 373, 622, 669
LmnI GCTCC 3 cut(s) 188, 409, 838
Lsp1109I GCAGC 7 cut(s) 169, 217, 331, 463, 466, 616, 874
LweI GCATC 4 cut(s) 156, 511, 669, 741
MaeI CTAG 3 cut(s) 87, 192, 810
MaeII ACGT 3 cut(s) 197, 269, 427
MaeIII GTNAC 1 cut(s) 642
MalI GATC 5 cut(s) 23, 102, 375, 624, 671
MbiI CCGCTC 2 cut(s) 316, 412
MboI GATC 5 cut(s) 21, 100, 373, 622, 669
MboII GAAGA 8 cut(s) 119, 236, 409, 449, 452, 632, 758, 872
MflI RGATCY 1 cut(s) 622
MluCI AATT 4 cut(s) 51, 509, 635, 882
MlyI GAGTC 2 cut(s) 347, 643
Mph1103I ATGCAT 1 cut(s) 662
MroI TCCGGA 1 cut(s) 162
MroNI GCCGGC 1 cut(s) 178
MseI TTAA 3 cut(s) 50, 639, 774
MslI CAYNNNNRTG 2 cut(s) 29, 606
MspA1I CMGCKG 2 cut(s) 206, 433
MspI CCGG 5 cut(s) 149, 153, 163, 179, 667
MspR9I CCNGG 3 cut(s) 44, 463, 836
Mva1269I GAATGC 1 cut(s) 662
MvaI CCWGG 3 cut(s) 44, 463, 836
MvnI CGCG 2 cut(s) 105, 206
MwoI GCNNNNNNNGC 8 cut(s) 175, 188, 209, 212, 313, 341, 458, 806
NaeI GCCGGC 1 cut(s) 180
NdeII GATC 5 cut(s) 21, 100, 373, 622, 669
NgoMIV GCCGGC 1 cut(s) 178
NheI GCTAGC 2 cut(s) 191, 809
NlaIII CATG 2 cut(s) 34, 712
NlaIV GGNNCC 2 cut(s) 216, 840
NruI TCGCGA 1 cut(s) 105
NsiI ATGCAT 1 cut(s) 662
PctI GAATGC 1 cut(s) 662
PdiI GCCGGC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 83
PleI GAGTC 2 cut(s) 347, 643
PpsI GAGTC 2 cut(s) 347, 643
Psp6I CCWGG 3 cut(s) 42, 461, 834
PspGI CCWGG 3 cut(s) 42, 461, 834
PspN4I GGNNCC 2 cut(s) 216, 840
PsuI RGATCY 1 cut(s) 622
PvuII CAGCTG 1 cut(s) 433
RruI TCGCGA 1 cut(s) 105
RsaI GTAC 1 cut(s) 532
RsaNI GTAC 1 cut(s) 531
RseI CAYNNNNRTG 2 cut(s) 29, 606
SacII CCGCGG 1 cut(s) 207
SalI GTCGAC 1 cut(s) 693
SaqAI TTAA 3 cut(s) 50, 639, 774
Sau3AI GATC 5 cut(s) 21, 100, 373, 622, 669
SchI GAGTC 2 cut(s) 347, 643
ScrFI CCNGG 3 cut(s) 44, 463, 836
SfaNI GCATC 4 cut(s) 156, 511, 669, 741
SfcI CTRYAG 2 cut(s) 219, 534
Sfr303I CCGCGG 1 cut(s) 207
SgrBI CCGCGG 1 cut(s) 207
SmiMI CAYNNNNRTG 2 cut(s) 29, 606
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
Sse9I AATT 4 cut(s) 51, 509, 635, 882
SspMI CTAG 3 cut(s) 87, 192, 810
StyD4I CCNGG 3 cut(s) 42, 461, 834
StyI CCWWGG 2 cut(s) 447, 615
TaiI ACGT 3 cut(s) 200, 272, 430
TaqI TCGA 1 cut(s) 694
TasI AATT 4 cut(s) 51, 509, 635, 882
TauI GCSGC 5 cut(s) 172, 206, 209, 212, 215
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 3 cut(s) 50, 639, 774
Tru9I TTAA 3 cut(s) 50, 639, 774
TseI GCWGC 7 cut(s) 182, 230, 344, 476, 479, 629, 887
TspDTI ATGAA 4 cut(s) 264, 288, 558, 817
TspGWI ACGGA 1 cut(s) 661
XapI RAATTY 2 cut(s) 509, 635
XcmI CCANNNNNNNNNTGG 1 cut(s) 63
XmiI GTMKAC 1 cut(s) 694
XspI CTAG 3 cut(s) 87, 192, 810
Zsp2I ATGCAT 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.