Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008682

Physical Location & Seq

Genomic Coordinates Forward (+)

33365829 .. 33368883

Gene Structure 3055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG256500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGAGGAAATGCTCGCTGTGATAATTTCCATGTTCCTCGTCTTGGCGTTAATTCCACTTTACCTATGGAAACGCCGTCAAGATTCTCGATCGCCCAAAGATCACGACGGCGAGCCTCAGGTTGCTCAGAGGGAGGCTGTGGTGCGTCCGGCCGGTAATCGGGGGCGGATGCGGAGGAGGCCGGCTGCTGGAGCTAGCACATCATCAGCCGCGGCGGCACCGCCTGTTGAAGAAGTTGCAGATGGAAGTGATGAGGAAGGTGTTGAGGATGAGACTTATGAAGCCAAAGCTTCAAGGAAAAAGGAAAAGAAGCGTCAAGAGCGGGAAGCACAGCGCCAAGCTGAACAAGCTGCACGGGACTCGAGGCAAACAAAACAAGATCGCTATGCTGAAATGCGGAGGAGGAAAGATGAGGAGCGGGAGGCACAAGAACATCAGCTGGAAGAAGAAGCCAAGGCTCAGAAGGCTAGGGAGGAGGAAGCTGCTGCATTAGAGCTCGAAAAGTGGAAAGGAGAATTTTCTGTAGATGCTGAAGGTACTACTGAGAATGAAGTGCAAGATGGACATCAGAATTTGCTTTCTAATTTTGTGGAATACATAAAGAAACATAAATGTGTTCCCTTGGAAGATCTTGCTGCTGAATTTAAGTTACGGACTCAGGAATGCATCAACCGGATTAACTCTCTGGAAAGTATGGGGCAACTTTCGGGTGTCATGGATGACAGAGGGAAATACATATACATCTCCCAAGAAGAGATGCAAGCCGTGGCAGACTATATCAAGCGTCAAGGGAGGGTTAGCATTGCACATCTTGCTAGCAAGTCTAACCAGTTCATTGACTTGGAGCCAAAAGCCCAGTTTGTTGAAGAAATCAGTATTGTCGAAGAGATTGCTGCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDRGK

Protein Analysis

300

Amino Acids

34.19

Weight (kDa)

5.2

Isoelectric Point (pI)

57.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DDRGK	PF09756	96 - 280	2.1e-52	DDRGK domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27120 AT4G27120 AT4G27120
fragaria_vesca	FvH4_3g21950
malus_domestica	MD03G1210000.v1.1 MD11G1224700.v1.1
prunus_persica	Prupe.4G205200_v2.0.a1 Prupe.4G205200_v2.0.a1
pyrus_communis	pycom03g15890 pycom11g19840
rosa_chinensis	RchiOBHm_Chr5g0037801
rosa_laevigata	RLG00000033810
rosa_multiflora	Rmu_sc0005416.1_g000007
rosa_roxburghii	Rroxscaffold_1G00043130
rosa_rugosa	Rorug05G0167200 Rorug05G0167300 Rorug05G0167400 Rorug05G0167500
rosa_samantha	Rh5AG256500 Rh5BG258900 Rh5CG291900 Rh5DG268800
rosa_wichuraiana	Rw5G023780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	217
AccBSI	CCGCTC	2 cut(s)	322, 418
AccII	CGCG	1 cut(s)	212
AciI	CCGC	9 cut(s)	166, 172, 210, 212, 215, 221, 322, 397, 418
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	3 cut(s)	515, 571, 641
AcuI	CTGAAG	1 cut(s)	552
AfaI	GTAC	1 cut(s)	538
AfiI	CCNNNNNNNGG	3 cut(s)	43, 159, 188
AgsI	TTSAA	3 cut(s)	230, 294, 866
AluBI	AGCT	7 cut(s)	194, 290, 341, 350, 439, 482, 496
AluI	AGCT	7 cut(s)	194, 290, 341, 350, 439, 482, 496
Alw21I	GWGCWC	1 cut(s)	498
Alw26I	GTCTC	1 cut(s)	266
Ama87I	CYCGRG	1 cut(s)	361
AoxI	GGCC	2 cut(s)	150, 179
ApeKI	GCWGC	6 cut(s)	185, 350, 482, 485, 635, 893
ApoI	RAATTY	3 cut(s)	515, 571, 641
AspLEI	GCGC	1 cut(s)	336
AsuNHI	GCTAGC	2 cut(s)	194, 815
AvaI	CYCGRG	1 cut(s)	361
AxyI	CCTNAGG	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	498
Bbv12I	GWGCWC	1 cut(s)	498
BbvI	GCAGC	6 cut(s)	172, 337, 469, 472, 622, 880
BccI	CCATC	2 cut(s)	236, 554
BceAI	ACGGC	3 cut(s)	60, 124, 749
BcgI	CGANNNNNNTGC	3 cut(s)	342, 376, 872
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	3 cut(s)	195, 468, 816
BfmI	CTRYAG	1 cut(s)	522
BfoI	RGCGCY	1 cut(s)	337
BglI	GCCNNNNNGGC	1 cut(s)	215
BglII	AGATCT	1 cut(s)	628
BisI	GCNGC	9 cut(s)	186, 210, 213, 216, 351, 483, 486, 636, 894
BlsI	GCNGC	9 cut(s)	187, 211, 214, 217, 352, 484, 487, 637, 895
BmeT110I	CYCGRG	1 cut(s)	361
BmiI	GGNNCC	2 cut(s)	219, 846
BmrI	ACTGGG	1 cut(s)	850
BmsI	GCATC	4 cut(s)	159, 517, 675, 747
BmtI	GCTAGC	2 cut(s)	198, 819
BmuI	ACTGGG	1 cut(s)	850
BpmI	CTGGAG	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	564
BsaJI	CCNNGG	4 cut(s)	210, 453, 621, 765
BsaWI	WCCGGW	1 cut(s)	672
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 159, 188
Bse118I	RCCGGY	2 cut(s)	152, 181
Bse1I	ACTGG	2 cut(s)	829, 856
Bse21I	CCTNAGG	1 cut(s)	117
Bse3DI	GCAATG	1 cut(s)	801
Bse8I	GATNNNNATC	1 cut(s)	564
BseDI	CCNNGG	4 cut(s)	210, 453, 621, 765
BseGI	GGATG	3 cut(s)	174, 274, 724
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	3 cut(s)	43, 159, 188
BseMI	GCAATG	1 cut(s)	801
BseMII	CTCAG	5 cut(s)	131, 140, 473, 534, 671
BseNI	ACTGG	2 cut(s)	829, 856
BseRI	GAGGAG	4 cut(s)	190, 415, 428, 488
BseX3I	CGGCCG	1 cut(s)	150
BseXI	GCAGC	6 cut(s)	172, 337, 469, 472, 622, 880
BsgI	GTGCAG	1 cut(s)	336
Bsh1236I	CGCG	1 cut(s)	212
Bsh1285I	CGRYCG	2 cut(s)	92, 153
BshFI	GGCC	2 cut(s)	152, 181
BshNI	GGYRCC	1 cut(s)	217
BsiEI	CGRYCG	2 cut(s)	92, 153
BsiHKAI	GWGCWC	1 cut(s)	498
BsiHKCI	CYCGRG	1 cut(s)	361
BsiSI	CCGG	4 cut(s)	149, 153, 182, 673
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	3 cut(s)	43, 159, 188
BsmAI	GTCTC	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	371
BsmI	GAATGC	1 cut(s)	668
BsnI	GGCC	2 cut(s)	152, 181
BsoBI	CYCGRG	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	498
Bsp143I	GATC	4 cut(s)	89, 100, 379, 628
BspACI	CCGC	9 cut(s)	166, 172, 210, 212, 215, 221, 322, 397, 418
BspANI	GGCC	2 cut(s)	152, 181
BspCNI	CTCAG	5 cut(s)	130, 139, 472, 535, 670
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	2 cut(s)	219, 846
BspOI	GCTAGC	2 cut(s)	198, 819
BspT107I	GGYRCC	1 cut(s)	217
BsrBI	CCGCTC	2 cut(s)	322, 418
BsrDI	GCAATG	1 cut(s)	801
BsrFI	RCCGGY	2 cut(s)	152, 181
BsrI	ACTGG	2 cut(s)	829, 856
BssAI	RCCGGY	2 cut(s)	152, 181
BssECI	CCNNGG	4 cut(s)	210, 453, 621, 765
BssMI	GATC	4 cut(s)	89, 100, 379, 628
BssT1I	CCWWGG	2 cut(s)	453, 621
Bst6I	CTCTTC	2 cut(s)	747, 879
BstAPI	GCANNNNNTGC	1 cut(s)	812
BstC8I	GCNNGC	6 cut(s)	15, 113, 183, 196, 762, 817
BstDEI	CTNAG	5 cut(s)	117, 126, 459, 543, 657
BstDSI	CCRYGG	2 cut(s)	210, 765
BstF5I	GGATG	3 cut(s)	174, 274, 724
BstFNI	CGCG	1 cut(s)	212
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	4 cut(s)	92, 103, 382, 631
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	4 cut(s)	89, 100, 379, 628
BstMCI	CGRYCG	2 cut(s)	92, 153
BstMWI	GCNNNNNNNGC	7 cut(s)	178, 191, 215, 319, 347, 464, 812
BstSFI	CTRYAG	1 cut(s)	522
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	6 cut(s)	172, 337, 469, 472, 622, 880
BstX2I	RGATCY	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	628
BstZI	CGGCCG	1 cut(s)	150
Bsu36I	CCTNAGG	1 cut(s)	117
BsuRI	GGCC	2 cut(s)	152, 181
BtgI	CCRYGG	2 cut(s)	210, 765
BtsCI	GGATG	3 cut(s)	174, 274, 724
Cac8I	GCNNGC	6 cut(s)	15, 113, 183, 196, 762, 817
CfoI	GCGC	1 cut(s)	336
Cfr10I	RCCGGY	2 cut(s)	152, 181
Cfr42I	CCGCGG	1 cut(s)	213
CseI	GACGC	3 cut(s)	134, 302, 773
Csp6I	GTAC	1 cut(s)	537
CviAII	CATG	2 cut(s)	31, 715
CviQI	GTAC	1 cut(s)	537
DdeI	CTNAG	5 cut(s)	117, 126, 459, 543, 657
DpnI	GATC	4 cut(s)	91, 102, 381, 630
DpnII	GATC	4 cut(s)	89, 100, 379, 628
EaeI	YGGCCR	1 cut(s)	150
EagI	CGGCCG	1 cut(s)	150
Eam1104I	CTCTTC	2 cut(s)	747, 879
EarI	CTCTTC	2 cut(s)	747, 879
EciI	GGCGGA	1 cut(s)	181
Ecl136II	GAGCTC	1 cut(s)	496
EclXI	CGGCCG	1 cut(s)	150
Eco130I	CCWWGG	2 cut(s)	453, 621
Eco24I	GRGCYC	1 cut(s)	498
Eco52I	CGGCCG	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	496
Eco57I	CTGAAG	1 cut(s)	552
Eco81I	CCTNAGG	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	361
EcoICRI	GAGCTC	1 cut(s)	496
EcoT14I	CCWWGG	2 cut(s)	453, 621
EcoT22I	ATGCAT	1 cut(s)	668
EcoT38I	GRGCYC	1 cut(s)	498
ErhI	CCWWGG	2 cut(s)	453, 621
FaeI	CATG	2 cut(s)	34, 718
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	2 cut(s)	30, 714
FauI	CCCGC	2 cut(s)	315, 411
Fnu4HI	GCNGC	9 cut(s)	186, 210, 213, 216, 351, 483, 486, 636, 894
FokI	GGATG	3 cut(s)	181, 281, 731
FriOI	GRGCYC	1 cut(s)	498
Fsp4HI	GCNGC	9 cut(s)	186, 210, 213, 216, 351, 483, 486, 636, 894
FspBI	CTAG	3 cut(s)	195, 468, 816
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	9 cut(s)	186, 210, 213, 216, 351, 483, 486, 636, 894
GsuI	CTGGAG	1 cut(s)	210
HaeII	RGCGCY	1 cut(s)	337
HaeIII	GGCC	2 cut(s)	152, 181
HapII	CCGG	4 cut(s)	149, 153, 182, 673
HgaI	GACGC	3 cut(s)	134, 302, 773
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	2 cut(s)	34, 718
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	3 cut(s)	83, 359, 655
HpaII	CCGG	4 cut(s)	149, 153, 182, 673
Hpy188I	TCNGA	3 cut(s)	129, 462, 570
Hpy188III	TCNNGA	6 cut(s)	80, 87, 104, 317, 659, 686
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	3 cut(s)	251, 457, 527
HpyCH4V	TGCA	7 cut(s)	239, 353, 488, 556, 666, 760, 806
HpyF10VI	GCNNNNNNNGC	7 cut(s)	178, 191, 215, 319, 347, 464, 812
HpyF3I	CTNAG	5 cut(s)	117, 126, 459, 543, 657
Hsp92II	CATG	2 cut(s)	34, 718
HspAI	GCGC	1 cut(s)	334
KroI	GCCGGC	1 cut(s)	181
KroNI	GCCGGC	1 cut(s)	183
KspI	CCGCGG	1 cut(s)	213
Kzo9I	GATC	4 cut(s)	89, 100, 379, 628
LmnI	GCTCC	3 cut(s)	191, 415, 844
Lsp1109I	GCAGC	6 cut(s)	172, 337, 469, 472, 622, 880
LweI	GCATC	4 cut(s)	159, 517, 675, 747
MaeI	CTAG	3 cut(s)	195, 468, 816
MaeIII	GTNAC	1 cut(s)	648
MalI	GATC	4 cut(s)	91, 102, 381, 630
MbiI	CCGCTC	2 cut(s)	322, 418
MboI	GATC	4 cut(s)	89, 100, 379, 628
MboII	GAAGA	7 cut(s)	242, 455, 458, 638, 764, 878, 896
MflI	RGATCY	1 cut(s)	628
MhlI	GDGCHC	1 cut(s)	498
MluCI	AATT	6 cut(s)	24, 51, 515, 571, 583, 641
MlyI	GAGTC	2 cut(s)	353, 649
Mph1103I	ATGCAT	1 cut(s)	668
MroNI	GCCGGC	1 cut(s)	181
MseI	TTAA	3 cut(s)	50, 645, 678
MslI	CAYNNNNRTG	1 cut(s)	612
MspA1I	CMGCKG	2 cut(s)	212, 439
MspI	CCGG	4 cut(s)	149, 153, 182, 673
Mva1269I	GAATGC	1 cut(s)	668
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	7 cut(s)	178, 191, 215, 319, 347, 464, 812
NaeI	GCCGGC	1 cut(s)	183
NdeII	GATC	4 cut(s)	89, 100, 379, 628
NgoMIV	GCCGGC	1 cut(s)	181
NheI	GCTAGC	2 cut(s)	194, 815
NlaIII	CATG	2 cut(s)	34, 718
NlaIV	GGNNCC	2 cut(s)	219, 846
NsiI	ATGCAT	1 cut(s)	668
PaeR7I	CTCGAG	1 cut(s)	361
PctI	GAATGC	1 cut(s)	668
PdiI	GCCGGC	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	9 cut(s)	187, 211, 214, 217, 352, 484, 487, 637, 895
Ple19I	CGATCG	1 cut(s)	92
PleI	GAGTC	2 cut(s)	353, 649
PpsI	GAGTC	2 cut(s)	353, 649
Psp124BI	GAGCTC	1 cut(s)	498
PspN4I	GGNNCC	2 cut(s)	219, 846
PspXI	VCTCGAGB	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	628
PvuI	CGATCG	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	439
RsaI	GTAC	1 cut(s)	538
RsaNI	GTAC	1 cut(s)	537
RseI	CAYNNNNRTG	1 cut(s)	612
SacI	GAGCTC	1 cut(s)	498
SacII	CCGCGG	1 cut(s)	213
SaqAI	TTAA	3 cut(s)	50, 645, 678
SatI	GCNGC	9 cut(s)	186, 210, 213, 216, 351, 483, 486, 636, 894
Sau3AI	GATC	4 cut(s)	89, 100, 379, 628
SchI	GAGTC	2 cut(s)	353, 649
SduI	GDGCHC	1 cut(s)	498
SfaNI	GCATC	4 cut(s)	159, 517, 675, 747
SfcI	CTRYAG	1 cut(s)	522
Sfr274I	CTCGAG	1 cut(s)	361
Sfr303I	CCGCGG	1 cut(s)	213
SgrBI	CCGCGG	1 cut(s)	213
SlaI	CTCGAG	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	612
SmlI	CTYRAG	1 cut(s)	361
SmoI	CTYRAG	1 cut(s)	361
Sse9I	AATT	6 cut(s)	24, 51, 515, 571, 583, 641
SsiI	CCGC	9 cut(s)	166, 172, 210, 212, 215, 221, 322, 397, 418
SspMI	CTAG	3 cut(s)	195, 468, 816
SstI	GAGCTC	1 cut(s)	498
StyI	CCWWGG	2 cut(s)	453, 621
TaqI	TCGA	4 cut(s)	88, 362, 498, 882
TasI	AATT	6 cut(s)	24, 51, 515, 571, 583, 641
TauI	GCSGC	3 cut(s)	212, 215, 218
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	3 cut(s)	50, 645, 678
Tru9I	TTAA	3 cut(s)	50, 645, 678
TseI	GCWGC	6 cut(s)	185, 350, 482, 485, 635, 893
TspDTI	ATGAA	3 cut(s)	294, 564, 823
TspGWI	ACGGA	1 cut(s)	667
XapI	RAATTY	3 cut(s)	515, 571, 641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	63
XhoI	CTCGAG	1 cut(s)	361
XspI	CTAG	3 cut(s)	195, 468, 816
Zsp2I	ATGCAT	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.