Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005416.1

Orthogroup ID

OG0008682

Physical Location & Seq

Genomic Coordinates Forward (+)

23854 .. 29845

Gene Structure 5992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005416.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

atgactggttctgtttcttggggaagtggagcatctcaaactcccaatgcgacaccaactgggtcaagcaccggaacaacaccaactgctacaagtgaagctatgtgccaatctcaaagggctcgtgagtcgtccctcacttctcccagtaatcaatttctcctccaaagattcatcaggtttcaagacgaagaagacgatcctctgccctctttttctctctttccgctttcaagcctgagacatatcaaaacgatggaggaaatgctcgctgtgataatttccatgttcctcgtcttggcgttaattccactttacctatggaaacgccgtcaagattctcgatcgcccaaagatcacgacggcgagcctcaggttgctcagagggaggctgtggtgcgtccggccggtaatcgggggcggatgcggaggaggccggctgctggagctagcacatcatcagccgcggcggcaccgcctgttgaagaagttgcagatggaagtgatgaggaaggtgttgaggatgagacttatgaagccaaagcttcaaggaaaaaggaaaagaagcgtcaagagcgggaagcacagcgccaagctgaacaagctgcacgggactcgaggcaaacaaaacaagatcgctatgctgaaatgcggaggaggaaagatgaggagcgggaggcacaagaacgtcagctggaagaagaagccaaggctcagaaggctagggaggaggaagctgctgcattagagctcgaaaagtggaaaggagaattttctgtagatgctgaaggtactactgagaatgaagtgcaagatggacatcagaatttgctttctaattttgtggaatacataaagaaacataaatgtgttcccttggaagatcttgctgctgaatttaagttacggactcaggaatgcatcaaccggattaactctctggaaagtatggggcaactttctggtgtcatggatgacagagggaaatacatatacatctcccaagaagagatgcaagccgtggcagactatatcaagcgccaagggcgggttagcattgcacatcttgctagcaagtctaaccagttcattgacttggagccaaaagcccagtttgttgaagaaatcagtattgtcgaagagattgctgccacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDRGK

Protein Analysis

385

Amino Acids

43.35

Weight (kDa)

5.24

Isoelectric Point (pI)

57.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27120 AT4G27120 AT4G27120
fragaria_vesca	FvH4_3g21950
malus_domestica	MD03G1210000.v1.1 MD11G1224700.v1.1
prunus_persica	Prupe.4G205200_v2.0.a1 Prupe.4G205200_v2.0.a1
pyrus_communis	pycom03g15890 pycom11g19840
rosa_chinensis	RchiOBHm_Chr5g0037801
rosa_laevigata	RLG00000033810
rosa_multiflora	Rmu_sc0005416.1_g000007
rosa_roxburghii	Rroxscaffold_1G00043130
rosa_rugosa	Rorug05G0167200 Rorug05G0167300 Rorug05G0167400 Rorug05G0167500
rosa_samantha	Rh5AG256500 Rh5BG258900 Rh5CG291900 Rh5DG268800
rosa_wichuraiana	Rw5G023780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	472
AccBSI	CCGCTC	2 cut(s)	577, 673
AccII	CGCG	1 cut(s)	467
AclWI	GGATC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	405
AcsI	RAATTY	3 cut(s)	770, 826, 896
AcuI	CTGAAG	1 cut(s)	807
AfaI	GTAC	1 cut(s)	793
AfiI	CCNNNNNNNGG	4 cut(s)	298, 414, 443, 1048
AgsI	TTSAA	5 cut(s)	185, 234, 485, 549, 1121
AluBI	AGCT	8 cut(s)	101, 449, 545, 596, 605, 694, 737, 751
AluI	AGCT	8 cut(s)	101, 449, 545, 596, 605, 694, 737, 751
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	2 cut(s)	235, 521
AlwI	GGATC	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	616
AoxI	GGCC	2 cut(s)	405, 434
ApeKI	GCWGC	6 cut(s)	440, 605, 737, 740, 890, 1148
ApoI	RAATTY	3 cut(s)	770, 826, 896
AspLEI	GCGC	2 cut(s)	591, 1041
AsuNHI	GCTAGC	2 cut(s)	449, 1070
AvaI	CYCGRG	1 cut(s)	616
AxyI	CCTNAGG	1 cut(s)	372
BanI	GGYRCC	1 cut(s)	472
BanII	GRGCYC	2 cut(s)	124, 753
BauI	CACGAG	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	6 cut(s)	427, 592, 724, 727, 877, 1135
BccI	CCATC	3 cut(s)	250, 491, 809
BceAI	ACGGC	3 cut(s)	315, 379, 1004
BcgI	CGANNNNNNTGC	3 cut(s)	597, 631, 1127
BcoDI	GTCTC	2 cut(s)	235, 521
BfaI	CTAG	3 cut(s)	450, 723, 1071
BfmI	CTRYAG	1 cut(s)	777
BfoI	RGCGCY	2 cut(s)	592, 1042
BglI	GCCNNNNNGGC	1 cut(s)	470
BglII	AGATCT	1 cut(s)	883
BisI	GCNGC	9 cut(s)	441, 465, 468, 471, 606, 738, 741, 891, 1149
BlsI	GCNGC	9 cut(s)	442, 466, 469, 472, 607, 739, 742, 892, 1150
BmeT110I	CYCGRG	1 cut(s)	616
BmiI	GGNNCC	2 cut(s)	474, 1101
BmrI	ACTGGG	3 cut(s)	69, 141, 1105
BmsI	GCATC	5 cut(s)	41, 414, 772, 930, 1002
BmtI	GCTAGC	2 cut(s)	453, 1074
BmuI	ACTGGG	3 cut(s)	69, 141, 1105
BpiI	GAAGAC	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	465
BsaBI	GATNNNNATC	1 cut(s)	819
BsaJI	CCNNGG	5 cut(s)	465, 708, 876, 1020, 1042
BsaWI	WCCGGW	2 cut(s)	71, 927
Bsc4I	CCNNNNNNNGG	4 cut(s)	298, 414, 443, 1048
Bse118I	RCCGGY	2 cut(s)	407, 436
Bse1I	ACTGG	5 cut(s)	10, 64, 147, 1084, 1111
Bse21I	CCTNAGG	1 cut(s)	372
Bse3DI	GCAATG	1 cut(s)	1056
Bse8I	GATNNNNATC	1 cut(s)	819
BseDI	CCNNGG	5 cut(s)	465, 708, 876, 1020, 1042
BseGI	GGATG	3 cut(s)	429, 529, 979
BseJI	GATNNNNATC	1 cut(s)	819
BseLI	CCNNNNNNNGG	4 cut(s)	298, 414, 443, 1048
BseMI	GCAATG	1 cut(s)	1056
BseMII	CTCAG	6 cut(s)	230, 386, 395, 728, 789, 926
BseNI	ACTGG	5 cut(s)	10, 64, 147, 1084, 1111
BseRI	GAGGAG	5 cut(s)	152, 445, 670, 683, 743
BseX3I	CGGCCG	1 cut(s)	405
BseXI	GCAGC	6 cut(s)	427, 592, 724, 727, 877, 1135
BsgI	GTGCAG	1 cut(s)	591
Bsh1236I	CGCG	1 cut(s)	467
Bsh1285I	CGRYCG	2 cut(s)	347, 408
BshFI	GGCC	2 cut(s)	407, 436
BshNI	GGYRCC	1 cut(s)	472
BsiEI	CGRYCG	2 cut(s)	347, 408
BsiHKAI	GWGCWC	1 cut(s)	753
BsiHKCI	CYCGRG	1 cut(s)	616
BsiSI	CCGG	5 cut(s)	72, 404, 408, 437, 928
BslFI	GGGAC	2 cut(s)	118, 626
BslI	CCNNNNNNNGG	4 cut(s)	298, 414, 443, 1048
BsmAI	GTCTC	2 cut(s)	235, 521
BsmFI	GGGAC	2 cut(s)	118, 626
BsmI	GAATGC	1 cut(s)	923
BsnI	GGCC	2 cut(s)	407, 436
BsoBI	CYCGRG	1 cut(s)	616
Bsp1286I	GDGCHC	2 cut(s)	124, 753
Bsp143I	GATC	5 cut(s)	199, 344, 355, 634, 883
BspANI	GGCC	2 cut(s)	407, 436
BspCNI	CTCAG	6 cut(s)	231, 385, 394, 727, 790, 925
BspFNI	CGCG	1 cut(s)	467
BspLI	GGNNCC	2 cut(s)	474, 1101
BspOI	GCTAGC	2 cut(s)	453, 1074
BspPI	GGATC	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	472
BsrBI	CCGCTC	2 cut(s)	577, 673
BsrDI	GCAATG	1 cut(s)	1056
BsrFI	RCCGGY	2 cut(s)	407, 436
BsrI	ACTGG	5 cut(s)	10, 64, 147, 1084, 1111
BssAI	RCCGGY	2 cut(s)	407, 436
BssECI	CCNNGG	5 cut(s)	465, 708, 876, 1020, 1042
BssMI	GATC	5 cut(s)	199, 344, 355, 634, 883
BssSI	CACGAG	1 cut(s)	123
BssT1I	CCWWGG	3 cut(s)	708, 876, 1042
Bst2BI	CACGAG	1 cut(s)	123
Bst6I	CTCTTC	2 cut(s)	1002, 1134
BstAPI	GCANNNNNTGC	1 cut(s)	1067
BstC8I	GCNNGC	6 cut(s)	270, 368, 438, 451, 1017, 1072
BstDEI	CTNAG	6 cut(s)	239, 372, 381, 714, 798, 912
BstDSI	CCRYGG	2 cut(s)	465, 1020
BstF5I	GGATG	3 cut(s)	429, 529, 979
BstFNI	CGCG	1 cut(s)	467
BstH2I	RGCGCY	2 cut(s)	592, 1042
BstHHI	GCGC	2 cut(s)	591, 1041
BstKTI	GATC	5 cut(s)	202, 347, 358, 637, 886
BstMAI	GTCTC	2 cut(s)	235, 521
BstMBI	GATC	5 cut(s)	199, 344, 355, 634, 883
BstMCI	CGRYCG	2 cut(s)	347, 408
BstMWI	GCNNNNNNNGC	8 cut(s)	433, 446, 470, 574, 602, 719, 1045, 1067
BstSFI	CTRYAG	1 cut(s)	777
BstUI	CGCG	1 cut(s)	467
BstV1I	GCAGC	6 cut(s)	427, 592, 724, 727, 877, 1135
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	883
BstYI	RGATCY	1 cut(s)	883
BstZI	CGGCCG	1 cut(s)	405
Bsu36I	CCTNAGG	1 cut(s)	372
BsuRI	GGCC	2 cut(s)	407, 436
BtgI	CCRYGG	2 cut(s)	465, 1020
BtsCI	GGATG	3 cut(s)	429, 529, 979
Cac8I	GCNNGC	6 cut(s)	270, 368, 438, 451, 1017, 1072
CfoI	GCGC	2 cut(s)	591, 1041
Cfr10I	RCCGGY	2 cut(s)	407, 436
Cfr42I	CCGCGG	1 cut(s)	468
CseI	GACGC	2 cut(s)	389, 557
Csp6I	GTAC	1 cut(s)	792
CviAII	CATG	2 cut(s)	286, 970
CviQI	GTAC	1 cut(s)	792
DdeI	CTNAG	6 cut(s)	239, 372, 381, 714, 798, 912
DpnI	GATC	5 cut(s)	201, 346, 357, 636, 885
DpnII	GATC	5 cut(s)	199, 344, 355, 634, 883
EaeI	YGGCCR	1 cut(s)	405
EagI	CGGCCG	1 cut(s)	405
Eam1104I	CTCTTC	2 cut(s)	1002, 1134
EarI	CTCTTC	2 cut(s)	1002, 1134
EciI	GGCGGA	1 cut(s)	436
Ecl136II	GAGCTC	1 cut(s)	751
EclXI	CGGCCG	1 cut(s)	405
Eco130I	CCWWGG	3 cut(s)	708, 876, 1042
Eco24I	GRGCYC	2 cut(s)	124, 753
Eco52I	CGGCCG	1 cut(s)	405
Eco53kI	GAGCTC	1 cut(s)	751
Eco57I	CTGAAG	1 cut(s)	807
Eco81I	CCTNAGG	1 cut(s)	372
Eco88I	CYCGRG	1 cut(s)	616
EcoICRI	GAGCTC	1 cut(s)	751
EcoT14I	CCWWGG	3 cut(s)	708, 876, 1042
EcoT22I	ATGCAT	1 cut(s)	923
EcoT38I	GRGCYC	2 cut(s)	124, 753
ErhI	CCWWGG	3 cut(s)	708, 876, 1042
FaeI	CATG	2 cut(s)	289, 973
FaqI	GGGAC	2 cut(s)	118, 626
FatI	CATG	2 cut(s)	285, 969
FauI	CCCGC	3 cut(s)	570, 666, 1041
Fnu4HI	GCNGC	9 cut(s)	441, 465, 468, 471, 606, 738, 741, 891, 1149
FokI	GGATG	3 cut(s)	436, 536, 986
FriOI	GRGCYC	2 cut(s)	124, 753
Fsp4HI	GCNGC	9 cut(s)	441, 465, 468, 471, 606, 738, 741, 891, 1149
FspBI	CTAG	3 cut(s)	450, 723, 1071
GlaI	GCGC	2 cut(s)	590, 1040
GluI	GCNGC	9 cut(s)	441, 465, 468, 471, 606, 738, 741, 891, 1149
GsuI	CTGGAG	1 cut(s)	465
HaeII	RGCGCY	2 cut(s)	592, 1042
HaeIII	GGCC	2 cut(s)	407, 436
HapII	CCGG	5 cut(s)	72, 404, 408, 437, 928
HgaI	GACGC	2 cut(s)	389, 557
HhaI	GCGC	2 cut(s)	591, 1041
Hin1II	CATG	2 cut(s)	289, 973
Hin6I	GCGC	2 cut(s)	589, 1039
HinP1I	GCGC	2 cut(s)	589, 1039
HindIII	AAGCTT	1 cut(s)	543
HinfI	GANTC	5 cut(s)	128, 171, 338, 614, 910
HpaII	CCGG	5 cut(s)	72, 404, 408, 437, 928
Hpy188I	TCNGA	3 cut(s)	384, 717, 825
Hpy188III	TCNNGA	8 cut(s)	125, 185, 335, 342, 359, 572, 914, 941
Hpy99I	CGWCG	1 cut(s)	365
HpyAV	CCTTC	3 cut(s)	506, 712, 782
HpyCH4IV	ACGT	1 cut(s)	688
HpyCH4V	TGCA	7 cut(s)	494, 608, 743, 811, 921, 1015, 1061
HpyF10VI	GCNNNNNNNGC	8 cut(s)	433, 446, 470, 574, 602, 719, 1045, 1067
HpyF3I	CTNAG	6 cut(s)	239, 372, 381, 714, 798, 912
HpySE526I	ACGT	1 cut(s)	688
Hsp92II	CATG	2 cut(s)	289, 973
HspAI	GCGC	2 cut(s)	589, 1039
KroI	GCCGGC	1 cut(s)	436
KroNI	GCCGGC	1 cut(s)	438
KspI	CCGCGG	1 cut(s)	468
Kzo9I	GATC	5 cut(s)	199, 344, 355, 634, 883
LmnI	GCTCC	4 cut(s)	29, 446, 670, 1099
Lsp1109I	GCAGC	6 cut(s)	427, 592, 724, 727, 877, 1135
LweI	GCATC	5 cut(s)	41, 414, 772, 930, 1002
MaeI	CTAG	3 cut(s)	450, 723, 1071
MaeII	ACGT	1 cut(s)	688
MaeIII	GTNAC	1 cut(s)	903
MalI	GATC	5 cut(s)	201, 346, 357, 636, 885
MbiI	CCGCTC	2 cut(s)	577, 673
MboI	GATC	5 cut(s)	199, 344, 355, 634, 883
MboII	GAAGA	9 cut(s)	203, 206, 497, 710, 713, 893, 1019, 1133, 1151
MflI	RGATCY	1 cut(s)	883
MhlI	GDGCHC	2 cut(s)	124, 753
MluCI	AATT	7 cut(s)	155, 279, 306, 770, 826, 838, 896
MlyI	GAGTC	3 cut(s)	137, 608, 904
Mph1103I	ATGCAT	1 cut(s)	923
MroNI	GCCGGC	1 cut(s)	436
MseI	TTAA	3 cut(s)	305, 900, 933
MslI	CAYNNNNRTG	1 cut(s)	867
MspA1I	CMGCKG	2 cut(s)	467, 694
MspI	CCGG	5 cut(s)	72, 404, 408, 437, 928
Mva1269I	GAATGC	1 cut(s)	923
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	8 cut(s)	433, 446, 470, 574, 602, 719, 1045, 1067
NaeI	GCCGGC	1 cut(s)	438
NdeII	GATC	5 cut(s)	199, 344, 355, 634, 883
NgoMIV	GCCGGC	1 cut(s)	436
NheI	GCTAGC	2 cut(s)	449, 1070
NlaIII	CATG	2 cut(s)	289, 973
NlaIV	GGNNCC	2 cut(s)	474, 1101
NsiI	ATGCAT	1 cut(s)	923
PaeR7I	CTCGAG	1 cut(s)	616
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PctI	GAATGC	1 cut(s)	923
PdiI	GCCGGC	1 cut(s)	438
PfeI	GAWTC	2 cut(s)	171, 338
PkrI	GCNGC	9 cut(s)	442, 466, 469, 472, 607, 739, 742, 892, 1150
Ple19I	CGATCG	1 cut(s)	347
PleI	GAGTC	3 cut(s)	136, 608, 904
PpsI	GAGTC	3 cut(s)	136, 608, 904
Psp124BI	GAGCTC	1 cut(s)	753
PspN4I	GGNNCC	2 cut(s)	474, 1101
PspXI	VCTCGAGB	1 cut(s)	616
PsuI	RGATCY	1 cut(s)	883
PvuI	CGATCG	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	694
RsaI	GTAC	1 cut(s)	793
RsaNI	GTAC	1 cut(s)	792
RseI	CAYNNNNRTG	1 cut(s)	867
SacI	GAGCTC	1 cut(s)	753
SacII	CCGCGG	1 cut(s)	468
SaqAI	TTAA	3 cut(s)	305, 900, 933
SatI	GCNGC	9 cut(s)	441, 465, 468, 471, 606, 738, 741, 891, 1149
Sau3AI	GATC	5 cut(s)	199, 344, 355, 634, 883
SchI	GAGTC	3 cut(s)	137, 608, 904
SduI	GDGCHC	2 cut(s)	124, 753
SfaNI	GCATC	5 cut(s)	41, 414, 772, 930, 1002
SfcI	CTRYAG	1 cut(s)	777
Sfr274I	CTCGAG	1 cut(s)	616
Sfr303I	CCGCGG	1 cut(s)	468
SgrBI	CCGCGG	1 cut(s)	468
SlaI	CTCGAG	1 cut(s)	616
SmiMI	CAYNNNNRTG	1 cut(s)	867
SmlI	CTYRAG	1 cut(s)	616
SmoI	CTYRAG	1 cut(s)	616
Sse9I	AATT	7 cut(s)	155, 279, 306, 770, 826, 838, 896
SspMI	CTAG	3 cut(s)	450, 723, 1071
SstI	GAGCTC	1 cut(s)	753
StyI	CCWWGG	3 cut(s)	708, 876, 1042
TaiI	ACGT	1 cut(s)	691
TaqI	TCGA	4 cut(s)	343, 617, 753, 1137
TasI	AATT	7 cut(s)	155, 279, 306, 770, 826, 838, 896
TauI	GCSGC	3 cut(s)	467, 470, 473
TfiI	GAWTC	2 cut(s)	171, 338
Tru1I	TTAA	3 cut(s)	305, 900, 933
Tru9I	TTAA	3 cut(s)	305, 900, 933
TseI	GCWGC	6 cut(s)	440, 605, 737, 740, 890, 1148
TspDTI	ATGAA	4 cut(s)	163, 549, 819, 1078
TspGWI	ACGGA	1 cut(s)	922
XapI	RAATTY	3 cut(s)	770, 826, 896
XcmI	CCANNNNNNNNNTGG	1 cut(s)	318
XhoI	CTCGAG	1 cut(s)	616
XspI	CTAG	3 cut(s)	450, 723, 1071
Zsp2I	ATGCAT	1 cut(s)	923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.