Rroxscaffold_1G00043130

DDRGK domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008682
Physical Location & Seq
Reverse (-)
61443104 .. 61446715
3612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00043130.1

Sequence Viewer

Length: 900 bp
ATGGAGGAAATGCTCGCTGTGATAATTTCCATGTTCCTCGTCTTGGCGTTAATTCCACTTTACCTATGGAAACGCCGTCAAGATTCTCGATTGCCCAAAGATCACGACGACGAGCCTCAGGTTGCTCAGAGGGAGGCTGTGGTGCGTCCGGCCGGTAATCGGCGGATGCGGAGGAGGCCGGCTGCTGGAGCTAGCACATCAGCAGCCGCCGCGGCACCGCCTGTTGAAGAAGTTGCAGATGGAAGTGATGAGGAAGGTGTTGAGGATGAGACTTATGAAGCCAAAGCTTCAAGGAAAAAGGAAAAGAAGCGTCAAGAGCGGGAAGCACAGCGCCAAGCTGAACAAGCTGCACGGGACTCGAGGCAAACAAAACAAGATCGCTATGCTGAAATGCGGAGGAGGAAAGATGAGGAGCGGGAGGCACAAGAACGTCAGCTGGAAGAAGAAGCCAAGGCTCAGAAGGCTAGGGAGGAGGAAGCTGCTGCATTAGAGCTCGAAAAGTGGAAAGGAGAATTTTCTGTAGATGCTGAAGGTACTATTGAGAATGAAGTGCAAGATGGACATCAGAATTTGCTTTCTAATTTTGTGGAATACATAAAGAAACATAAATGTGTTCCCTTGGAAGATCTTGCTGCTGAATTTAAGTTACGGACTCAGGAATGCATCAACCGGATTAACTCTCTGGAAAGTATGGGGCAACTTTCTGGTGTCATGGATGACAGAGGGAAATACATATACATCTCCCAAGAAGAGATGCAAGCCGTGGCAGACTATATCAAGCGTCAAGGGAGGGTTAGCATTGCACATCTTGCTAGCAAGTCTAACCAGTTCATTGACTTGGAGCCAAAAGCCCAGTTTGTTGAAGAAATCAGTATTGTCGAAGAGATTGCTGCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDRGK

Protein Analysis

299

Amino Acids

34.23

Weight (kDa)

5.15

Isoelectric Point (pI)

58.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DDRGK PF09756 95 - 279 3.4e-52 DDRGK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 214
AccBSI CCGCTC 2 cut(s) 319, 415
AccII CGCG 1 cut(s) 212
AciI CCGC 9 cut(s) 163, 169, 207, 210, 212, 218, 319, 394, 415
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 3 cut(s) 512, 568, 638
AcuI CTGAAG 1 cut(s) 549
AfaI GTAC 1 cut(s) 535
AfiI CCNNNNNNNGG 3 cut(s) 43, 159, 185
AgsI TTSAA 3 cut(s) 227, 291, 863
AluBI AGCT 7 cut(s) 191, 287, 338, 347, 436, 479, 493
AluI AGCT 7 cut(s) 191, 287, 338, 347, 436, 479, 493
Alw21I GWGCWC 1 cut(s) 495
Alw26I GTCTC 1 cut(s) 263
Ama87I CYCGRG 1 cut(s) 358
AoxI GGCC 2 cut(s) 150, 176
ApeKI GCWGC 7 cut(s) 182, 203, 347, 479, 482, 632, 890
ApoI RAATTY 3 cut(s) 512, 568, 638
AspLEI GCGC 1 cut(s) 333
AsuNHI GCTAGC 2 cut(s) 191, 812
AvaI CYCGRG 1 cut(s) 358
AxyI CCTNAGG 1 cut(s) 117
BanI GGYRCC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 495
Bbv12I GWGCWC 1 cut(s) 495
BbvI GCAGC 7 cut(s) 169, 215, 334, 466, 469, 619, 877
BccI CCATC 2 cut(s) 233, 551
BceAI ACGGC 2 cut(s) 60, 746
BcgI CGANNNNNNTGC 3 cut(s) 339, 373, 869
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 3 cut(s) 192, 465, 813
BfmI CTRYAG 1 cut(s) 519
BfoI RGCGCY 1 cut(s) 334
BglI GCCNNNNNGGC 1 cut(s) 212
BglII AGATCT 1 cut(s) 625
BmeT110I CYCGRG 1 cut(s) 358
BmiI GGNNCC 2 cut(s) 216, 843
BmrI ACTGGG 1 cut(s) 847
BmsI GCATC 4 cut(s) 156, 514, 672, 744
BmtI GCTAGC 2 cut(s) 195, 816
BmuI ACTGGG 1 cut(s) 847
BpmI CTGGAG 1 cut(s) 207
BsaBI GATNNNNATC 1 cut(s) 561
BsaJI CCNNGG 4 cut(s) 210, 450, 618, 762
BsaWI WCCGGW 1 cut(s) 669
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 159, 185
Bse118I RCCGGY 2 cut(s) 152, 178
Bse1I ACTGG 2 cut(s) 826, 853
Bse21I CCTNAGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 798
Bse8I GATNNNNATC 1 cut(s) 561
BseDI CCNNGG 4 cut(s) 210, 450, 618, 762
BseGI GGATG 3 cut(s) 171, 271, 721
BseJI GATNNNNATC 1 cut(s) 561
BseLI CCNNNNNNNGG 3 cut(s) 43, 159, 185
BseMI GCAATG 1 cut(s) 798
BseMII CTCAG 4 cut(s) 131, 140, 470, 668
BseNI ACTGG 2 cut(s) 826, 853
BseRI GAGGAG 4 cut(s) 187, 412, 425, 485
BseX3I CGGCCG 1 cut(s) 150
BseXI GCAGC 7 cut(s) 169, 215, 334, 466, 469, 619, 877
BsgI GTGCAG 1 cut(s) 333
Bsh1236I CGCG 1 cut(s) 212
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 2 cut(s) 152, 178
BshNI GGYRCC 1 cut(s) 214
BsiEI CGRYCG 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 495
BsiHKCI CYCGRG 1 cut(s) 358
BsiSI CCGG 4 cut(s) 149, 153, 179, 670
BslFI GGGAC 1 cut(s) 368
BslI CCNNNNNNNGG 3 cut(s) 43, 159, 185
BsmAI GTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 368
BsmI GAATGC 1 cut(s) 665
BsnI GGCC 2 cut(s) 152, 178
BsoBI CYCGRG 1 cut(s) 358
Bsp1286I GDGCHC 1 cut(s) 495
Bsp143I GATC 3 cut(s) 100, 376, 625
BspACI CCGC 9 cut(s) 163, 169, 207, 210, 212, 218, 319, 394, 415
BspANI GGCC 2 cut(s) 152, 178
BspCNI CTCAG 4 cut(s) 130, 139, 469, 667
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 2 cut(s) 216, 843
BspOI GCTAGC 2 cut(s) 195, 816
BspT107I GGYRCC 1 cut(s) 214
BsrBI CCGCTC 2 cut(s) 319, 415
BsrDI GCAATG 1 cut(s) 798
BsrFI RCCGGY 2 cut(s) 152, 178
BsrI ACTGG 2 cut(s) 826, 853
BssAI RCCGGY 2 cut(s) 152, 178
BssECI CCNNGG 4 cut(s) 210, 450, 618, 762
BssMI GATC 3 cut(s) 100, 376, 625
BssT1I CCWWGG 2 cut(s) 450, 618
Bst6I CTCTTC 2 cut(s) 744, 876
BstAPI GCANNNNNTGC 1 cut(s) 809
BstC8I GCNNGC 5 cut(s) 15, 180, 193, 759, 814
BstDEI CTNAG 4 cut(s) 117, 126, 456, 654
BstDSI CCRYGG 2 cut(s) 210, 762
BstF5I GGATG 3 cut(s) 171, 271, 721
BstFNI CGCG 1 cut(s) 212
BstH2I RGCGCY 1 cut(s) 334
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 3 cut(s) 103, 379, 628
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 3 cut(s) 100, 376, 625
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 8 cut(s) 175, 188, 209, 212, 316, 344, 461, 809
BstSFI CTRYAG 1 cut(s) 519
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 7 cut(s) 169, 215, 334, 466, 469, 619, 877
BstX2I RGATCY 1 cut(s) 625
BstYI RGATCY 1 cut(s) 625
BstZI CGGCCG 1 cut(s) 150
Bsu36I CCTNAGG 1 cut(s) 117
BsuRI GGCC 2 cut(s) 152, 178
BtgI CCRYGG 2 cut(s) 210, 762
BtsCI GGATG 3 cut(s) 171, 271, 721
Cac8I GCNNGC 5 cut(s) 15, 180, 193, 759, 814
CfoI GCGC 1 cut(s) 333
Cfr10I RCCGGY 2 cut(s) 152, 178
Cfr42I CCGCGG 1 cut(s) 213
CseI GACGC 3 cut(s) 134, 299, 770
Csp6I GTAC 1 cut(s) 534
CviAII CATG 2 cut(s) 31, 712
CviQI GTAC 1 cut(s) 534
DdeI CTNAG 4 cut(s) 117, 126, 456, 654
DpnI GATC 3 cut(s) 102, 378, 627
DpnII GATC 3 cut(s) 100, 376, 625
EaeI YGGCCR 1 cut(s) 150
EagI CGGCCG 1 cut(s) 150
Eam1104I CTCTTC 2 cut(s) 744, 876
EarI CTCTTC 2 cut(s) 744, 876
EciI GGCGGA 1 cut(s) 178
Ecl136II GAGCTC 1 cut(s) 493
EclXI CGGCCG 1 cut(s) 150
Eco130I CCWWGG 2 cut(s) 450, 618
Eco24I GRGCYC 1 cut(s) 495
Eco52I CGGCCG 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 493
Eco57I CTGAAG 1 cut(s) 549
Eco81I CCTNAGG 1 cut(s) 117
Eco88I CYCGRG 1 cut(s) 358
EcoICRI GAGCTC 1 cut(s) 493
EcoT14I CCWWGG 2 cut(s) 450, 618
EcoT22I ATGCAT 1 cut(s) 665
EcoT38I GRGCYC 1 cut(s) 495
ErhI CCWWGG 2 cut(s) 450, 618
FaeI CATG 2 cut(s) 34, 715
FaqI GGGAC 1 cut(s) 368
FatI CATG 2 cut(s) 30, 711
FauI CCCGC 2 cut(s) 312, 408
FokI GGATG 3 cut(s) 178, 278, 728
FriOI GRGCYC 1 cut(s) 495
FspBI CTAG 3 cut(s) 192, 465, 813
GlaI GCGC 1 cut(s) 332
GsuI CTGGAG 1 cut(s) 207
HaeII RGCGCY 1 cut(s) 334
HaeIII GGCC 2 cut(s) 152, 178
HapII CCGG 4 cut(s) 149, 153, 179, 670
HgaI GACGC 3 cut(s) 134, 299, 770
HhaI GCGC 1 cut(s) 333
Hin1II CATG 2 cut(s) 34, 715
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 3 cut(s) 83, 356, 652
HpaII CCGG 4 cut(s) 149, 153, 179, 670
Hpy188I TCNGA 3 cut(s) 129, 459, 567
Hpy188III TCNNGA 6 cut(s) 80, 87, 104, 314, 656, 683
Hpy99I CGWCG 2 cut(s) 110, 113
HpyAV CCTTC 3 cut(s) 248, 454, 524
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 7 cut(s) 236, 350, 485, 553, 663, 757, 803
HpyF10VI GCNNNNNNNGC 8 cut(s) 175, 188, 209, 212, 316, 344, 461, 809
HpyF3I CTNAG 4 cut(s) 117, 126, 456, 654
HpySE526I ACGT 1 cut(s) 430
Hsp92II CATG 2 cut(s) 34, 715
HspAI GCGC 1 cut(s) 331
KroI GCCGGC 1 cut(s) 178
KroNI GCCGGC 1 cut(s) 180
KspI CCGCGG 1 cut(s) 213
Kzo9I GATC 3 cut(s) 100, 376, 625
LmnI GCTCC 3 cut(s) 188, 412, 841
Lsp1109I GCAGC 7 cut(s) 169, 215, 334, 466, 469, 619, 877
LweI GCATC 4 cut(s) 156, 514, 672, 744
MaeI CTAG 3 cut(s) 192, 465, 813
MaeII ACGT 1 cut(s) 430
MaeIII GTNAC 1 cut(s) 645
MalI GATC 3 cut(s) 102, 378, 627
MbiI CCGCTC 2 cut(s) 319, 415
MboI GATC 3 cut(s) 100, 376, 625
MboII GAAGA 7 cut(s) 239, 452, 455, 635, 761, 875, 893
MflI RGATCY 1 cut(s) 625
MhlI GDGCHC 1 cut(s) 495
MluCI AATT 6 cut(s) 24, 51, 512, 568, 580, 638
MlyI GAGTC 2 cut(s) 350, 646
Mph1103I ATGCAT 1 cut(s) 665
MroNI GCCGGC 1 cut(s) 178
MseI TTAA 3 cut(s) 50, 642, 675
MslI CAYNNNNRTG 1 cut(s) 609
MspA1I CMGCKG 2 cut(s) 212, 436
MspI CCGG 4 cut(s) 149, 153, 179, 670
Mva1269I GAATGC 1 cut(s) 665
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 8 cut(s) 175, 188, 209, 212, 316, 344, 461, 809
NaeI GCCGGC 1 cut(s) 180
NdeII GATC 3 cut(s) 100, 376, 625
NgoMIV GCCGGC 1 cut(s) 178
NheI GCTAGC 2 cut(s) 191, 812
NlaIII CATG 2 cut(s) 34, 715
NlaIV GGNNCC 2 cut(s) 216, 843
NsiI ATGCAT 1 cut(s) 665
PaeR7I CTCGAG 1 cut(s) 358
PctI GAATGC 1 cut(s) 665
PdiI GCCGGC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 83
PleI GAGTC 2 cut(s) 350, 646
PpsI GAGTC 2 cut(s) 350, 646
Psp124BI GAGCTC 1 cut(s) 495
PspN4I GGNNCC 2 cut(s) 216, 843
PspXI VCTCGAGB 1 cut(s) 358
PsuI RGATCY 1 cut(s) 625
PvuII CAGCTG 1 cut(s) 436
RsaI GTAC 1 cut(s) 535
RsaNI GTAC 1 cut(s) 534
RseI CAYNNNNRTG 1 cut(s) 609
SacI GAGCTC 1 cut(s) 495
SacII CCGCGG 1 cut(s) 213
SaqAI TTAA 3 cut(s) 50, 642, 675
Sau3AI GATC 3 cut(s) 100, 376, 625
SchI GAGTC 2 cut(s) 350, 646
SduI GDGCHC 1 cut(s) 495
SfaNI GCATC 4 cut(s) 156, 514, 672, 744
SfcI CTRYAG 1 cut(s) 519
Sfr274I CTCGAG 1 cut(s) 358
Sfr303I CCGCGG 1 cut(s) 213
SgrBI CCGCGG 1 cut(s) 213
SlaI CTCGAG 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 609
SmlI CTYRAG 1 cut(s) 358
SmoI CTYRAG 1 cut(s) 358
Sse9I AATT 6 cut(s) 24, 51, 512, 568, 580, 638
SsiI CCGC 9 cut(s) 163, 169, 207, 210, 212, 218, 319, 394, 415
SspMI CTAG 3 cut(s) 192, 465, 813
SstI GAGCTC 1 cut(s) 495
StyI CCWWGG 2 cut(s) 450, 618
TaiI ACGT 1 cut(s) 433
TaqI TCGA 4 cut(s) 88, 359, 495, 879
TasI AATT 6 cut(s) 24, 51, 512, 568, 580, 638
TauI GCSGC 3 cut(s) 209, 212, 215
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 3 cut(s) 50, 642, 675
Tru9I TTAA 3 cut(s) 50, 642, 675
TseI GCWGC 7 cut(s) 182, 203, 347, 479, 482, 632, 890
TspDTI ATGAA 3 cut(s) 291, 561, 820
TspGWI ACGGA 1 cut(s) 664
XapI RAATTY 3 cut(s) 512, 568, 638
XcmI CCANNNNNNNNNTGG 1 cut(s) 63
XhoI CTCGAG 1 cut(s) 358
XspI CTAG 3 cut(s) 192, 465, 813
Zsp2I ATGCAT 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.