RLG00000033810

DDRGK domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008682
Physical Location & Seq
Forward (+)
32477018 .. 32480370
3353 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033810

Sequence Viewer

Length: 1014 bp
ATGAACAGAGGACTACGAAGAAGACGATCCTCTGCCCTCTTCTTCTCTCTTTCCGCTTTCAAGGGTCTCATTTTTCACGGTGGTGTTGTTGGCAACCTGAGACATATCAAAACGATGGAGGAAATGCTCGCTGTGATAATTTCCATGTTCCTCGTCTTGGCGTTAATTCCACTTTACCTATGGAAACGCCGTCAAGATTCTCGATCGCCCAAAGATCACGACGACGAGCCTCAGGTTGCTCAGAGGGAGGCTGTGGTGCGTCCGGCCGGTAATCGACGGATGCGGAGGAGACCGGCTGCTGGAGCTAGCACATCATCAGCCGCGGCGGCACCACCTGTTGAAGAAGTTGCATATGGAAGTGATGAGGAAGGTGTTGAGGATGAGACTTATGAAGCTAAAGCTTCAAGGAAAAAGGAAAAGAAGCGTCAAGAGCGGGAAGCACAGCGCCAAGCTGAACAAGCTGCACAGGACTCGAGGCAAACAAAACAAGATCGCTATGCTGAAATGCGGAGGAGGAAAGATGAGGAGCGGGAGGCACAAGAACGTCAGCTGGAAGAAGAAGCCAAGGCTCAGAAAGCTAGGGAGGAGGAAGCTGCTGCATTAGAGCTCGAAAAGTGGAAAGGAGAATTTTCTGTAGATGCTGAAGGTACTACTGAGAATGAAGTGCAAGATGGACATCAGAATTTGCTTTCTAATTTTGTGGAATACATAAAGAAACATAAATGTGTTCCCTTGGAAGATCTTGCTGCTGAATTTAAGTTACGGACTCAGGAATGCATCAACCGGATTAACTCTCTGGAAAGTATGGGGCAACTTTCTGGTGTCATGGATGACAGAGGGAAATACATATACATCTCCCAAGAAGAGATGCAAGCCGTGGCAGACTATATCAAGCGTCAAGGGAGGGTTAGCATTGCACATCTTGCTAGCAAGTCTAACCAGTTCATTGACTTGGAGCCAAAAGCCCAGTTTGTTGAAGAAATCAGTATTGTCGAAGAGGTTGCTGCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDRGK

Protein Analysis

338

Amino Acids

38.5

Weight (kDa)

6.03

Isoelectric Point (pI)

63.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DDRGK PF09756 133 - 317 9.5e-52 DDRGK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 328
AccBSI CCGCTC 2 cut(s) 433, 529
AccII CGCG 1 cut(s) 323
AciI CCGC 8 cut(s) 54, 283, 321, 323, 326, 433, 508, 529
AclWI GGATC 1 cut(s) 21
AcoI YGGCCR 1 cut(s) 264
AcsI RAATTY 3 cut(s) 626, 682, 752
AcuI CTGAAG 1 cut(s) 663
AfaI GTAC 1 cut(s) 649
AfiI CCNNNNNNNGG 2 cut(s) 157, 299
AgsI TTSAA 4 cut(s) 61, 341, 405, 977
AleI CACNNNNGTG 1 cut(s) 81
AluBI AGCT 9 cut(s) 305, 395, 401, 452, 461, 550, 578, 593, 607
AluI AGCT 9 cut(s) 305, 395, 401, 452, 461, 550, 578, 593, 607
Alw21I GWGCWC 1 cut(s) 609
Alw26I GTCTC 4 cut(s) 71, 94, 283, 377
AlwI GGATC 1 cut(s) 21
Ama87I CYCGRG 1 cut(s) 472
AoxI GGCC 1 cut(s) 264
ApeKI GCWGC 6 cut(s) 296, 461, 593, 596, 746, 1004
ApoI RAATTY 3 cut(s) 626, 682, 752
AspLEI GCGC 1 cut(s) 447
AsuNHI GCTAGC 2 cut(s) 305, 926
AvaI CYCGRG 1 cut(s) 472
AxyI CCTNAGG 1 cut(s) 231
BanI GGYRCC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 609
BbsI GAAGAC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 609
BbvI GCAGC 6 cut(s) 283, 448, 580, 583, 733, 991
BccI CCATC 2 cut(s) 109, 665
BceAI ACGGC 2 cut(s) 174, 860
BcgI CGANNNNNNTGC 3 cut(s) 453, 487, 983
BcoDI GTCTC 4 cut(s) 71, 94, 283, 377
BfaI CTAG 3 cut(s) 306, 579, 927
BfmI CTRYAG 1 cut(s) 633
BfoI RGCGCY 1 cut(s) 448
BglI GCCNNNNNGGC 1 cut(s) 326
BglII AGATCT 1 cut(s) 739
BisI GCNGC 9 cut(s) 297, 321, 324, 327, 462, 594, 597, 747, 1005
BlsI GCNGC 9 cut(s) 298, 322, 325, 328, 463, 595, 598, 748, 1006
BmeT110I CYCGRG 1 cut(s) 472
BmiI GGNNCC 2 cut(s) 330, 957
BmrI ACTGGG 1 cut(s) 961
BmsI GCATC 4 cut(s) 270, 628, 786, 858
BmtI GCTAGC 2 cut(s) 309, 930
BmuI ACTGGG 1 cut(s) 961
BpiI GAAGAC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 321
BsaBI GATNNNNATC 1 cut(s) 675
BsaI GGTCTC 2 cut(s) 71, 283
BsaJI CCNNGG 4 cut(s) 321, 564, 732, 876
BsaWI WCCGGW 1 cut(s) 783
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 299
Bse118I RCCGGY 2 cut(s) 266, 292
Bse1I ACTGG 2 cut(s) 940, 967
Bse21I CCTNAGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 912
Bse8I GATNNNNATC 1 cut(s) 675
BseDI CCNNGG 4 cut(s) 321, 564, 732, 876
BseGI GGATG 3 cut(s) 285, 385, 835
BseJI GATNNNNATC 1 cut(s) 675
BseLI CCNNNNNNNGG 2 cut(s) 157, 299
BseMI GCAATG 1 cut(s) 912
BseMII CTCAG 6 cut(s) 89, 245, 254, 584, 645, 782
BseNI ACTGG 2 cut(s) 940, 967
BseRI GAGGAG 4 cut(s) 301, 526, 539, 599
BseX3I CGGCCG 1 cut(s) 264
BseXI GCAGC 6 cut(s) 283, 448, 580, 583, 733, 991
BsgI GTGCAG 1 cut(s) 447
Bsh1236I CGCG 1 cut(s) 323
Bsh1285I CGRYCG 2 cut(s) 206, 267
BshFI GGCC 1 cut(s) 266
BshNI GGYRCC 1 cut(s) 328
BsiEI CGRYCG 2 cut(s) 206, 267
BsiHKAI GWGCWC 1 cut(s) 609
BsiHKCI CYCGRG 1 cut(s) 472
BsiSI CCGG 4 cut(s) 263, 267, 293, 784
BslI CCNNNNNNNGG 2 cut(s) 157, 299
BsmAI GTCTC 4 cut(s) 71, 94, 283, 377
BsmI GAATGC 1 cut(s) 779
BsnI GGCC 1 cut(s) 266
Bso31I GGTCTC 2 cut(s) 71, 283
BsoBI CYCGRG 1 cut(s) 472
Bsp1286I GDGCHC 1 cut(s) 609
Bsp143I GATC 5 cut(s) 26, 203, 214, 490, 739
BspACI CCGC 8 cut(s) 54, 283, 321, 323, 326, 433, 508, 529
BspANI GGCC 1 cut(s) 266
BspCNI CTCAG 6 cut(s) 90, 244, 253, 583, 646, 781
BspFNI CGCG 1 cut(s) 323
BspLI GGNNCC 2 cut(s) 330, 957
BspOI GCTAGC 2 cut(s) 309, 930
BspPI GGATC 1 cut(s) 21
BspT107I GGYRCC 1 cut(s) 328
BspTNI GGTCTC 2 cut(s) 71, 283
BsrBI CCGCTC 2 cut(s) 433, 529
BsrDI GCAATG 1 cut(s) 912
BsrFI RCCGGY 2 cut(s) 266, 292
BsrI ACTGG 2 cut(s) 940, 967
BssAI RCCGGY 2 cut(s) 266, 292
BssECI CCNNGG 4 cut(s) 321, 564, 732, 876
BssMI GATC 5 cut(s) 26, 203, 214, 490, 739
BssT1I CCWWGG 2 cut(s) 564, 732
Bst4CI ACNGT 1 cut(s) 80
Bst6I CTCTTC 3 cut(s) 44, 858, 990
BstAPI GCANNNNNTGC 1 cut(s) 923
BstC8I GCNNGC 4 cut(s) 129, 307, 873, 928
BstDEI CTNAG 6 cut(s) 98, 231, 240, 570, 654, 768
BstDSI CCRYGG 2 cut(s) 321, 876
BstF5I GGATG 3 cut(s) 285, 385, 835
BstFNI CGCG 1 cut(s) 323
BstH2I RGCGCY 1 cut(s) 448
BstHHI GCGC 1 cut(s) 447
BstKTI GATC 5 cut(s) 29, 206, 217, 493, 742
BstMAI GTCTC 4 cut(s) 71, 94, 283, 377
BstMBI GATC 5 cut(s) 26, 203, 214, 490, 739
BstMCI CGRYCG 2 cut(s) 206, 267
BstMWI GCNNNNNNNGC 6 cut(s) 302, 326, 430, 458, 575, 923
BstSFI CTRYAG 1 cut(s) 633
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 6 cut(s) 283, 448, 580, 583, 733, 991
BstV2I GAAGAC 1 cut(s) 28
BstX2I RGATCY 1 cut(s) 739
BstYI RGATCY 1 cut(s) 739
BstZI CGGCCG 1 cut(s) 264
Bsu36I CCTNAGG 1 cut(s) 231
BsuRI GGCC 1 cut(s) 266
BtgI CCRYGG 2 cut(s) 321, 876
BtsCI GGATG 3 cut(s) 285, 385, 835
Cac8I GCNNGC 4 cut(s) 129, 307, 873, 928
CfoI GCGC 1 cut(s) 447
Cfr10I RCCGGY 2 cut(s) 266, 292
Cfr42I CCGCGG 1 cut(s) 324
CseI GACGC 3 cut(s) 248, 413, 884
Csp6I GTAC 1 cut(s) 648
CviAII CATG 2 cut(s) 145, 826
CviQI GTAC 1 cut(s) 648
DdeI CTNAG 6 cut(s) 98, 231, 240, 570, 654, 768
DpnI GATC 5 cut(s) 28, 205, 216, 492, 741
DpnII GATC 5 cut(s) 26, 203, 214, 490, 739
EaeI YGGCCR 1 cut(s) 264
EagI CGGCCG 1 cut(s) 264
Eam1104I CTCTTC 3 cut(s) 44, 858, 990
EarI CTCTTC 3 cut(s) 44, 858, 990
Ecl136II GAGCTC 1 cut(s) 607
EclXI CGGCCG 1 cut(s) 264
Eco130I CCWWGG 2 cut(s) 564, 732
Eco24I GRGCYC 1 cut(s) 609
Eco31I GGTCTC 2 cut(s) 71, 283
Eco52I CGGCCG 1 cut(s) 264
Eco53kI GAGCTC 1 cut(s) 607
Eco57I CTGAAG 1 cut(s) 663
Eco81I CCTNAGG 1 cut(s) 231
Eco88I CYCGRG 1 cut(s) 472
EcoICRI GAGCTC 1 cut(s) 607
EcoT14I CCWWGG 2 cut(s) 564, 732
EcoT22I ATGCAT 1 cut(s) 779
EcoT38I GRGCYC 1 cut(s) 609
ErhI CCWWGG 2 cut(s) 564, 732
FaeI CATG 2 cut(s) 148, 829
FatI CATG 2 cut(s) 144, 825
FauI CCCGC 2 cut(s) 426, 522
FauNDI CATATG 1 cut(s) 352
Fnu4HI GCNGC 9 cut(s) 297, 321, 324, 327, 462, 594, 597, 747, 1005
FokI GGATG 3 cut(s) 292, 392, 842
FriOI GRGCYC 1 cut(s) 609
Fsp4HI GCNGC 9 cut(s) 297, 321, 324, 327, 462, 594, 597, 747, 1005
FspBI CTAG 3 cut(s) 306, 579, 927
GlaI GCGC 1 cut(s) 446
GluI GCNGC 9 cut(s) 297, 321, 324, 327, 462, 594, 597, 747, 1005
GsuI CTGGAG 1 cut(s) 321
HaeII RGCGCY 1 cut(s) 448
HaeIII GGCC 1 cut(s) 266
HapII CCGG 4 cut(s) 263, 267, 293, 784
HgaI GACGC 3 cut(s) 248, 413, 884
HhaI GCGC 1 cut(s) 447
Hin1II CATG 2 cut(s) 148, 829
Hin6I GCGC 1 cut(s) 445
HinP1I GCGC 1 cut(s) 445
HindIII AAGCTT 1 cut(s) 399
HinfI GANTC 3 cut(s) 197, 470, 766
HpaII CCGG 4 cut(s) 263, 267, 293, 784
Hpy188I TCNGA 3 cut(s) 243, 573, 681
Hpy188III TCNNGA 6 cut(s) 194, 201, 218, 428, 770, 797
Hpy99I CGWCG 3 cut(s) 224, 227, 279
HpyAV CCTTC 2 cut(s) 362, 638
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4IV ACGT 1 cut(s) 544
HpyCH4V TGCA 7 cut(s) 350, 464, 599, 667, 777, 871, 917
HpyF10VI GCNNNNNNNGC 6 cut(s) 302, 326, 430, 458, 575, 923
HpyF3I CTNAG 6 cut(s) 98, 231, 240, 570, 654, 768
HpySE526I ACGT 1 cut(s) 544
Hsp92II CATG 2 cut(s) 148, 829
HspAI GCGC 1 cut(s) 445
KspI CCGCGG 1 cut(s) 324
Kzo9I GATC 5 cut(s) 26, 203, 214, 490, 739
LmnI GCTCC 3 cut(s) 302, 526, 955
Lsp1109I GCAGC 6 cut(s) 283, 448, 580, 583, 733, 991
LweI GCATC 4 cut(s) 270, 628, 786, 858
MaeI CTAG 3 cut(s) 306, 579, 927
MaeII ACGT 1 cut(s) 544
MaeIII GTNAC 1 cut(s) 759
MalI GATC 5 cut(s) 28, 205, 216, 492, 741
MbiI CCGCTC 2 cut(s) 433, 529
MboI GATC 5 cut(s) 26, 203, 214, 490, 739
MflI RGATCY 1 cut(s) 739
MhlI GDGCHC 1 cut(s) 609
MluCI AATT 6 cut(s) 138, 165, 626, 682, 694, 752
MlyI GAGTC 2 cut(s) 464, 760
Mph1103I ATGCAT 1 cut(s) 779
MseI TTAA 3 cut(s) 164, 756, 789
MslI CAYNNNNRTG 2 cut(s) 81, 723
MspA1I CMGCKG 2 cut(s) 323, 550
MspI CCGG 4 cut(s) 263, 267, 293, 784
Mva1269I GAATGC 1 cut(s) 779
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 6 cut(s) 302, 326, 430, 458, 575, 923
NdeI CATATG 1 cut(s) 352
NdeII GATC 5 cut(s) 26, 203, 214, 490, 739
NheI GCTAGC 2 cut(s) 305, 926
NlaIII CATG 2 cut(s) 148, 829
NlaIV GGNNCC 2 cut(s) 330, 957
NsiI ATGCAT 1 cut(s) 779
OliI CACNNNNGTG 1 cut(s) 81
PaeR7I CTCGAG 1 cut(s) 472
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PctI GAATGC 1 cut(s) 779
PfeI GAWTC 1 cut(s) 197
PkrI GCNGC 9 cut(s) 298, 322, 325, 328, 463, 595, 598, 748, 1006
Ple19I CGATCG 1 cut(s) 206
PleI GAGTC 2 cut(s) 464, 760
PpsI GAGTC 2 cut(s) 464, 760
Psp124BI GAGCTC 1 cut(s) 609
PspN4I GGNNCC 2 cut(s) 330, 957
PspXI VCTCGAGB 1 cut(s) 472
PsuI RGATCY 1 cut(s) 739
PvuI CGATCG 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 550
RsaI GTAC 1 cut(s) 649
RsaNI GTAC 1 cut(s) 648
RseI CAYNNNNRTG 2 cut(s) 81, 723
SacI GAGCTC 1 cut(s) 609
SacII CCGCGG 1 cut(s) 324
SaqAI TTAA 3 cut(s) 164, 756, 789
SatI GCNGC 9 cut(s) 297, 321, 324, 327, 462, 594, 597, 747, 1005
Sau3AI GATC 5 cut(s) 26, 203, 214, 490, 739
SchI GAGTC 2 cut(s) 464, 760
SduI GDGCHC 1 cut(s) 609
SfaNI GCATC 4 cut(s) 270, 628, 786, 858
SfcI CTRYAG 1 cut(s) 633
Sfr274I CTCGAG 1 cut(s) 472
Sfr303I CCGCGG 1 cut(s) 324
SgrBI CCGCGG 1 cut(s) 324
SlaI CTCGAG 1 cut(s) 472
SmiMI CAYNNNNRTG 2 cut(s) 81, 723
SmlI CTYRAG 1 cut(s) 472
SmoI CTYRAG 1 cut(s) 472
Sse9I AATT 6 cut(s) 138, 165, 626, 682, 694, 752
SsiI CCGC 8 cut(s) 54, 283, 321, 323, 326, 433, 508, 529
SspMI CTAG 3 cut(s) 306, 579, 927
SstI GAGCTC 1 cut(s) 609
StyI CCWWGG 2 cut(s) 564, 732
TaaI ACNGT 1 cut(s) 80
TaiI ACGT 1 cut(s) 547
TaqI TCGA 5 cut(s) 202, 274, 473, 609, 993
TasI AATT 6 cut(s) 138, 165, 626, 682, 694, 752
TauI GCSGC 3 cut(s) 323, 326, 329
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 3 cut(s) 164, 756, 789
Tru9I TTAA 3 cut(s) 164, 756, 789
TseI GCWGC 6 cut(s) 296, 461, 593, 596, 746, 1004
TspDTI ATGAA 4 cut(s) 17, 405, 675, 934
TspGWI ACGGA 2 cut(s) 292, 778
XapI RAATTY 3 cut(s) 626, 682, 752
XcmI CCANNNNNNNNNTGG 1 cut(s) 177
XhoI CTCGAG 1 cut(s) 472
XspI CTAG 3 cut(s) 306, 579, 927
Zsp2I ATGCAT 1 cut(s) 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.