Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008682

Physical Location & Seq

Genomic Coordinates Reverse (-)

17129509 .. 17132180

Gene Structure 2672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGACGAAATGTTGGCAATTTTTCTTTCCATGCTTCTTGTTTTGGGATTGATTCCACTATTTCTATGGAAACGCCGTCAAGATTCTCGATCGCCGCATGAACACGAAGGAGAACCTCAGGTTGCTCAGAGGGAGGCGGTGGTGCGTGCGCCTGGCGGTCGCCGGATGCGTAGGAGGCCGGCTTCTGGAGCAAGCACATCAGCAGCTGCTGCTGCACCAGGTGTAGAAGAATCCGTTGAGGGAAGTGATGAGGAAGATGTTGAGGGCGAGTATGATGCTAAAGCATCCAAGAAGAGGGAAAAGAAGCGCCAAGAGCGGGAAGCACAACGACAAGCTGAACAAGCTGCACGTGAATCTAGGGTAACAAAACAAGACCGCTATGCTGAAATGCGGAGGAGGAAAGATGAGGAGCGTGAAGCACAGGAGCGTCAGCTGGAGGAAGAAGCCAAAGCGCAAAAGGCTAGGGAGGAGGAAGCTGCTGCTTTAGAGTTTGAGAAGTGGAAAGGCGAGTTTTCAATAGATGCTGAAGGTACGACCGAGAATGAAGTGCAGGATGGACGTCAGGATTTGCTTTCTGATTTTGTGGAATACATAAAGAAACACAAATGCATTCCTCTGGAAGATCTTGCTGCTGAATTTAAGTTAAGGACTCAGGAATGCATCAATCGAATTACTAATCTCGAGAGTATGGGGCGACTTTCTGGCGTCATGGATGACAGAGGGAAATACATATACATCTCCCAAGAGGAGATGCAAGCTGTAGCAGACTACATTAAGCGTCTGGGAAGGGTAAGCATTTCGCATCTTGCTAGCAAGTCCAACCAGTTCATAGACTTGGAGCCCAAAGCGCAGTTTGTTGAAGAAATCAGCGGCGGGGCGGAGATAACAGTCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDRGK

Protein Analysis

299

Amino Acids

33.96

Weight (kDa)

5.22

Isoelectric Point (pI)

58.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DDRGK	PF09756	94 - 278	1.2e-52	DDRGK domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27120 AT4G27120 AT4G27120
fragaria_vesca	FvH4_3g21950
malus_domestica	MD03G1210000.v1.1 MD11G1224700.v1.1
prunus_persica	Prupe.4G205200_v2.0.a1 Prupe.4G205200_v2.0.a1
pyrus_communis	pycom03g15890 pycom11g19840
rosa_chinensis	RchiOBHm_Chr5g0037801
rosa_laevigata	RLG00000033810
rosa_multiflora	Rmu_sc0005416.1_g000007
rosa_roxburghii	Rroxscaffold_1G00043130
rosa_rugosa	Rorug05G0167200 Rorug05G0167300 Rorug05G0167400 Rorug05G0167500
rosa_samantha	Rh5AG256500 Rh5BG258900 Rh5CG291900 Rh5DG268800
rosa_wichuraiana	Rw5G023780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	562
AccBSI	CCGCTC	1 cut(s)	316
AciI	CCGC	9 cut(s)	95, 137, 156, 316, 376, 391, 870, 873, 878
AcsI	RAATTY	1 cut(s)	635
AcuI	CTGAAG	1 cut(s)	546
AcvI	CACGTG	1 cut(s)	350
AcyI	GRCGYC	2 cut(s)	559, 705
AdeI	CACNNNGTG	1 cut(s)	221
AfaI	GTAC	1 cut(s)	532
AfiI	CCNNNNNNNGG	3 cut(s)	185, 294, 316
AgsI	TTSAA	2 cut(s)	516, 860
AjnI	CCWGG	2 cut(s)	151, 217
AluBI	AGCT	6 cut(s)	206, 335, 344, 433, 476, 758
AluI	AGCT	6 cut(s)	206, 335, 344, 433, 476, 758
AlwNI	CAGNNNCTG	2 cut(s)	206, 209
Ama87I	CYCGRG	1 cut(s)	680
AoxI	GGCC	1 cut(s)	176
ApeKI	GCWGC	8 cut(s)	203, 206, 209, 212, 344, 476, 479, 629
ApoI	RAATTY	1 cut(s)	635
AspLEI	GCGC	4 cut(s)	151, 309, 454, 850
AsuNHI	GCTAGC	1 cut(s)	809
AvaI	CYCGRG	1 cut(s)	680
AxyI	CCTNAGG	1 cut(s)	117
BanII	GRGCYC	1 cut(s)	843
BbrPI	CACGTG	1 cut(s)	350
BbvI	GCAGC	8 cut(s)	193, 196, 199, 215, 331, 463, 466, 616
BccI	CCATC	1 cut(s)	548
BceAI	ACGGC	1 cut(s)	60
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BciT130I	CCWGG	2 cut(s)	153, 219
BfaI	CTAG	3 cut(s)	357, 462, 810
BfmI	CTRYAG	1 cut(s)	759
BfoI	RGCGCY	1 cut(s)	310
BglII	AGATCT	1 cut(s)	622
Bme1390I	CCNGG	2 cut(s)	153, 219
BmeT110I	CYCGRG	1 cut(s)	680
BmiI	GGNNCC	1 cut(s)	840
BmrFI	CCNGG	2 cut(s)	153, 219
BmsI	GCATC	7 cut(s)	156, 265, 293, 511, 669, 741, 811
BmtI	GCTAGC	1 cut(s)	813
BpmI	CTGGAG	2 cut(s)	207, 455
BsaAI	YACGTR	1 cut(s)	350
BsaHI	GRCGYC	2 cut(s)	559, 705
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 294, 316
Bse118I	RCCGGY	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	823
Bse21I	CCTNAGG	1 cut(s)	117
BseBI	CCWGG	2 cut(s)	153, 219
BseGI	GGATG	4 cut(s)	171, 284, 559, 718
BseLI	CCNNNNNNNGG	3 cut(s)	185, 294, 316
BseMII	CTCAG	3 cut(s)	131, 140, 665
BseNI	ACTGG	1 cut(s)	823
BseRI	GAGGAG	4 cut(s)	409, 422, 482, 761
BseXI	GCAGC	8 cut(s)	193, 196, 199, 215, 331, 463, 466, 616
BsgI	GTGCAG	3 cut(s)	198, 330, 569
Bsh1285I	CGRYCG	3 cut(s)	92, 160, 537
BshFI	GGCC	1 cut(s)	178
BsiEI	CGRYCG	3 cut(s)	92, 160, 537
BsiHKCI	CYCGRG	1 cut(s)	680
BsiSI	CCGG	2 cut(s)	163, 179
BslI	CCNNNNNNNGG	3 cut(s)	185, 294, 316
BsmI	GAATGC	2 cut(s)	609, 662
BsnI	GGCC	1 cut(s)	178
BsoBI	CYCGRG	1 cut(s)	680
Bsp1286I	GDGCHC	1 cut(s)	843
Bsp143I	GATC	2 cut(s)	89, 622
BspACI	CCGC	9 cut(s)	95, 137, 156, 316, 376, 391, 870, 873, 878
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	3 cut(s)	130, 139, 664
BspLI	GGNNCC	1 cut(s)	840
BspOI	GCTAGC	1 cut(s)	813
BsrBI	CCGCTC	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	823
BssAI	RCCGGY	1 cut(s)	178
BssMI	GATC	2 cut(s)	89, 622
BssNI	GRCGYC	2 cut(s)	559, 705
Bst2UI	CCWGG	2 cut(s)	153, 219
Bst4CI	ACNGT	1 cut(s)	889
Bst6I	CTCTTC	1 cut(s)	287
BstACI	GRCGYC	2 cut(s)	559, 705
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstBAI	YACGTR	1 cut(s)	350
BstC8I	GCNNGC	5 cut(s)	147, 180, 193, 756, 811
BstDEI	CTNAG	3 cut(s)	117, 126, 651
BstF5I	GGATG	4 cut(s)	171, 284, 559, 718
BstH2I	RGCGCY	1 cut(s)	310
BstHHI	GCGC	4 cut(s)	151, 309, 454, 850
BstKTI	GATC	2 cut(s)	92, 625
BstMBI	GATC	2 cut(s)	89, 622
BstMCI	CGRYCG	3 cut(s)	92, 160, 537
BstMWI	GCNNNNNNNGC	8 cut(s)	175, 188, 209, 212, 313, 341, 458, 847
BstNI	CCWGG	2 cut(s)	153, 219
BstSCI	CCNGG	2 cut(s)	151, 217
BstSFI	CTRYAG	1 cut(s)	759
BstV1I	GCAGC	8 cut(s)	193, 196, 199, 215, 331, 463, 466, 616
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
Bsu36I	CCTNAGG	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	178
BtsCI	GGATG	4 cut(s)	171, 284, 559, 718
Cac8I	GCNNGC	5 cut(s)	147, 180, 193, 756, 811
CaiI	CAGNNNCTG	2 cut(s)	206, 209
CfoI	GCGC	4 cut(s)	151, 309, 454, 850
Cfr10I	RCCGGY	1 cut(s)	178
CseI	GACGC	3 cut(s)	416, 694, 767
CsiI	ACCWGGT	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	531
CviAII	CATG	3 cut(s)	31, 98, 709
CviQI	GTAC	1 cut(s)	531
DdeI	CTNAG	3 cut(s)	117, 126, 651
DpnI	GATC	2 cut(s)	91, 624
DpnII	GATC	2 cut(s)	89, 622
DraIII	CACNNNGTG	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
EciI	GGCGGA	1 cut(s)	893
Eco24I	GRGCYC	1 cut(s)	843
Eco57I	CTGAAG	1 cut(s)	546
Eco72I	CACGTG	1 cut(s)	350
Eco81I	CCTNAGG	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	680
EcoRII	CCWGG	2 cut(s)	151, 217
EcoT22I	ATGCAT	2 cut(s)	611, 662
EcoT38I	GRGCYC	1 cut(s)	843
FaeI	CATG	3 cut(s)	34, 101, 712
FatI	CATG	3 cut(s)	30, 97, 708
FauI	CCCGC	2 cut(s)	309, 866
FokI	GGATG	4 cut(s)	178, 271, 566, 725
FriOI	GRGCYC	1 cut(s)	843
FspBI	CTAG	3 cut(s)	357, 462, 810
GlaI	GCGC	4 cut(s)	150, 308, 453, 849
GsuI	CTGGAG	2 cut(s)	207, 455
HaeII	RGCGCY	1 cut(s)	310
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	2 cut(s)	163, 179
HgaI	GACGC	3 cut(s)	416, 694, 767
HhaI	GCGC	4 cut(s)	151, 309, 454, 850
Hin1I	GRCGYC	2 cut(s)	559, 705
Hin1II	CATG	3 cut(s)	34, 101, 712
Hin6I	GCGC	4 cut(s)	149, 307, 452, 848
HinP1I	GCGC	4 cut(s)	149, 307, 452, 848
HinfI	GANTC	5 cut(s)	52, 83, 230, 353, 649
HpaII	CCGG	2 cut(s)	163, 179
Hpy188I	TCNGA	2 cut(s)	129, 577
Hpy188III	TCNNGA	8 cut(s)	80, 87, 186, 563, 617, 653, 680, 682
HpyAV	CCTTC	3 cut(s)	101, 521, 780
HpyCH4III	ACNGT	1 cut(s)	889
HpyCH4IV	ACGT	2 cut(s)	349, 559
HpyCH4V	TGCA	6 cut(s)	215, 347, 550, 609, 660, 754
HpyF10VI	GCNNNNNNNGC	8 cut(s)	175, 188, 209, 212, 313, 341, 458, 847
HpyF3I	CTNAG	3 cut(s)	117, 126, 651
HpySE526I	ACGT	2 cut(s)	349, 559
Hsp92I	GRCGYC	2 cut(s)	559, 705
Hsp92II	CATG	3 cut(s)	34, 101, 712
HspAI	GCGC	4 cut(s)	149, 307, 452, 848
KroI	GCCGGC	1 cut(s)	178
KroNI	GCCGGC	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	89, 622
LmnI	GCTCC	4 cut(s)	188, 409, 424, 838
Lsp1109I	GCAGC	8 cut(s)	193, 196, 199, 215, 331, 463, 466, 616
LweI	GCATC	7 cut(s)	156, 265, 293, 511, 669, 741, 811
MabI	ACCWGGT	1 cut(s)	217
MaeI	CTAG	3 cut(s)	357, 462, 810
MaeII	ACGT	2 cut(s)	349, 559
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	2 cut(s)	91, 624
MbiI	CCGCTC	1 cut(s)	316
MboI	GATC	2 cut(s)	89, 622
MboII	GAAGA	6 cut(s)	239, 266, 304, 452, 632, 872
MflI	RGATCY	1 cut(s)	622
MhlI	GDGCHC	1 cut(s)	843
MluCI	AATT	3 cut(s)	18, 635, 669
MlyI	GAGTC	1 cut(s)	643
MmeI	TCCRAC	1 cut(s)	843
Mph1103I	ATGCAT	2 cut(s)	611, 662
MroNI	GCCGGC	1 cut(s)	178
MseI	TTAA	3 cut(s)	639, 644, 774
MspA1I	CMGCKG	3 cut(s)	206, 433, 870
MspI	CCGG	2 cut(s)	163, 179
MspR9I	CCNGG	2 cut(s)	153, 219
Mva1269I	GAATGC	2 cut(s)	609, 662
MvaI	CCWGG	2 cut(s)	153, 219
MwoI	GCNNNNNNNGC	8 cut(s)	175, 188, 209, 212, 313, 341, 458, 847
NaeI	GCCGGC	1 cut(s)	180
NdeII	GATC	2 cut(s)	89, 622
NgoMIV	GCCGGC	1 cut(s)	178
NheI	GCTAGC	1 cut(s)	809
NlaIII	CATG	3 cut(s)	34, 101, 712
NlaIV	GGNNCC	1 cut(s)	840
NsiI	ATGCAT	2 cut(s)	611, 662
PaeR7I	CTCGAG	1 cut(s)	680
PcsI	WCGNNNNNNNCGW	1 cut(s)	166
PctI	GAATGC	2 cut(s)	609, 662
PdiI	GCCGGC	1 cut(s)	180
PfeI	GAWTC	4 cut(s)	52, 83, 230, 353
Ple19I	CGATCG	1 cut(s)	92
PleI	GAGTC	1 cut(s)	643
PmaCI	CACGTG	1 cut(s)	350
PmlI	CACGTG	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	643
Ppu21I	YACGTR	1 cut(s)	350
Psp6I	CCWGG	2 cut(s)	151, 217
PspCI	CACGTG	1 cut(s)	350
PspGI	CCWGG	2 cut(s)	151, 217
PspN4I	GGNNCC	1 cut(s)	840
PstNI	CAGNNNCTG	2 cut(s)	206, 209
PsuI	RGATCY	1 cut(s)	622
PvuI	CGATCG	1 cut(s)	92
PvuII	CAGCTG	2 cut(s)	206, 433
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
SaqAI	TTAA	3 cut(s)	639, 644, 774
Sau3AI	GATC	2 cut(s)	89, 622
SchI	GAGTC	1 cut(s)	643
ScrFI	CCNGG	2 cut(s)	153, 219
SduI	GDGCHC	1 cut(s)	843
SexAI	ACCWGGT	1 cut(s)	217
SfaNI	GCATC	7 cut(s)	156, 265, 293, 511, 669, 741, 811
SfcI	CTRYAG	1 cut(s)	759
Sfr274I	CTCGAG	1 cut(s)	680
SlaI	CTCGAG	1 cut(s)	680
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse9I	AATT	3 cut(s)	18, 635, 669
SsiI	CCGC	9 cut(s)	95, 137, 156, 316, 376, 391, 870, 873, 878
SspMI	CTAG	3 cut(s)	357, 462, 810
StyD4I	CCNGG	2 cut(s)	151, 217
TaaI	ACNGT	1 cut(s)	889
TaiI	ACGT	2 cut(s)	352, 562
TaqI	TCGA	3 cut(s)	88, 667, 681
TaqII	GACCGA	1 cut(s)	551
TasI	AATT	3 cut(s)	18, 635, 669
TauI	GCSGC	2 cut(s)	97, 873
TfiI	GAWTC	4 cut(s)	52, 83, 230, 353
Tru1I	TTAA	3 cut(s)	639, 644, 774
Tru9I	TTAA	3 cut(s)	639, 644, 774
TseI	GCWGC	8 cut(s)	203, 206, 209, 212, 344, 476, 479, 629
TspDTI	ATGAA	3 cut(s)	114, 558, 817
TspGWI	ACGGA	1 cut(s)	223
XapI	RAATTY	1 cut(s)	635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	63
XhoI	CTCGAG	1 cut(s)	680
XspI	CTAG	3 cut(s)	357, 462, 810
ZraI	GACGTC	1 cut(s)	560
Zsp2I	ATGCAT	2 cut(s)	611, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.