Rh5DG268800

DDRGK domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0008682
Physical Location & Seq
Forward (+)
32578115 .. 32581866
3752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG268800.1

Sequence Viewer

Length: 696 bp
ATGGAGGAAATGCTCGCTGTGATAATCTCCATGTTCCTCGTCTTGGCGTTAATTCCACTTTACCTATGGAAACGCCGTCAAGATTCTCGATCGCCCAAAGATCACGACGGCGAGCCTCAGGTTGCTCAGAGGGAGGCTGTGGTGCGTCCGGCCGGTAATCGGGGGCGGATGCGGAGGAGGCCGGCTGCTGGAGCTAGCACATCATCAGCCGCGGCGGCACCGCCTGTTGAAGAAGTTGCAGATGGAAGTGATGATGAAGGTGTTGAGGATGAGACTTATGAAGCCAAAGCTTCAAGGAAAAAGGAAAAGAAGCGTCAAGAGCGGGAAGCACAGCGCCAAGCTGAACAAGCTGCACGGGACTCGAGGCAAACAAAACAAGATCGCTATGCTGAAATGCGGAGGAGGAAAGATGAGGAGCGGGAGGCACAAGAACGTCAGCTGGAAGAAGAAGCCAAGGCTCAGAAGGCTAGGGAGGAGGAAGCTGCTGCATTAGAGCTCGAAAAGTGGAAAGGAGAATTTTCTGTAGATGCTGAAGGTACTACTGAGAATGAAGTGCAAGATGGACATCAGAATTTGCTTTCTAATTTTGTGGAATACATAAAGAAACATAAATGTGTTCCCTTGGAAGATCTTGCTGCTGAATTTAAGTTACGGACTCAGGTAATCTCTCTATTTGTTTTGTTGAATGACATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDRGK

Protein Analysis

231

Amino Acids

26.44

Weight (kDa)

5.34

Isoelectric Point (pI)

60.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DDRGK PF09756 96 - 222 4e-21 DDRGK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 217
AccBSI CCGCTC 2 cut(s) 322, 418
AccII CGCG 1 cut(s) 212
AciI CCGC 9 cut(s) 166, 172, 210, 212, 215, 221, 322, 397, 418
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 3 cut(s) 515, 571, 641
AcuI CTGAAG 1 cut(s) 552
AfaI GTAC 1 cut(s) 538
AfiI CCNNNNNNNGG 3 cut(s) 43, 159, 188
AgsI TTSAA 3 cut(s) 230, 294, 685
AluBI AGCT 7 cut(s) 194, 290, 341, 350, 439, 482, 496
AluI AGCT 7 cut(s) 194, 290, 341, 350, 439, 482, 496
Alw21I GWGCWC 1 cut(s) 498
Alw26I GTCTC 1 cut(s) 266
Ama87I CYCGRG 1 cut(s) 361
AoxI GGCC 2 cut(s) 150, 179
ApeKI GCWGC 5 cut(s) 185, 350, 482, 485, 635
ApoI RAATTY 3 cut(s) 515, 571, 641
AspLEI GCGC 1 cut(s) 336
AsuNHI GCTAGC 1 cut(s) 194
AvaI CYCGRG 1 cut(s) 361
AxyI CCTNAGG 1 cut(s) 117
BanI GGYRCC 1 cut(s) 217
BanII GRGCYC 1 cut(s) 498
Bbv12I GWGCWC 1 cut(s) 498
BbvI GCAGC 5 cut(s) 172, 337, 469, 472, 622
BccI CCATC 2 cut(s) 236, 554
BceAI ACGGC 2 cut(s) 60, 124
BcgI CGANNNNNNTGC 2 cut(s) 342, 376
BcoDI GTCTC 1 cut(s) 266
BfaI CTAG 2 cut(s) 195, 468
BfmI CTRYAG 1 cut(s) 522
BfoI RGCGCY 1 cut(s) 337
BglI GCCNNNNNGGC 1 cut(s) 215
BglII AGATCT 1 cut(s) 628
BisI GCNGC 8 cut(s) 186, 210, 213, 216, 351, 483, 486, 636
BlsI GCNGC 8 cut(s) 187, 211, 214, 217, 352, 484, 487, 637
BmeT110I CYCGRG 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 219
BmsI GCATC 2 cut(s) 159, 517
BmtI GCTAGC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 210
BsaBI GATNNNNATC 1 cut(s) 564
BsaJI CCNNGG 3 cut(s) 210, 453, 621
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 159, 188
Bse118I RCCGGY 2 cut(s) 152, 181
Bse21I CCTNAGG 1 cut(s) 117
Bse8I GATNNNNATC 1 cut(s) 564
BseDI CCNNGG 3 cut(s) 210, 453, 621
BseGI GGATG 2 cut(s) 174, 274
BseJI GATNNNNATC 1 cut(s) 564
BseLI CCNNNNNNNGG 3 cut(s) 43, 159, 188
BseMII CTCAG 5 cut(s) 131, 140, 473, 534, 671
BseRI GAGGAG 4 cut(s) 190, 415, 428, 488
BseX3I CGGCCG 1 cut(s) 150
BseXI GCAGC 5 cut(s) 172, 337, 469, 472, 622
BsgI GTGCAG 1 cut(s) 336
Bsh1236I CGCG 1 cut(s) 212
Bsh1285I CGRYCG 2 cut(s) 92, 153
BshFI GGCC 2 cut(s) 152, 181
BshNI GGYRCC 1 cut(s) 217
BsiEI CGRYCG 2 cut(s) 92, 153
BsiHKAI GWGCWC 1 cut(s) 498
BsiHKCI CYCGRG 1 cut(s) 361
BsiSI CCGG 3 cut(s) 149, 153, 182
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 3 cut(s) 43, 159, 188
BsmAI GTCTC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 2 cut(s) 152, 181
BsoBI CYCGRG 1 cut(s) 361
Bsp1286I GDGCHC 1 cut(s) 498
Bsp143I GATC 4 cut(s) 89, 100, 379, 628
BspACI CCGC 9 cut(s) 166, 172, 210, 212, 215, 221, 322, 397, 418
BspANI GGCC 2 cut(s) 152, 181
BspCNI CTCAG 5 cut(s) 130, 139, 472, 535, 670
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 219
BspOI GCTAGC 1 cut(s) 198
BspT107I GGYRCC 1 cut(s) 217
BsrBI CCGCTC 2 cut(s) 322, 418
BsrFI RCCGGY 2 cut(s) 152, 181
BssAI RCCGGY 2 cut(s) 152, 181
BssECI CCNNGG 3 cut(s) 210, 453, 621
BssMI GATC 4 cut(s) 89, 100, 379, 628
BssT1I CCWWGG 2 cut(s) 453, 621
BstC8I GCNNGC 4 cut(s) 15, 113, 183, 196
BstDEI CTNAG 5 cut(s) 117, 126, 459, 543, 657
BstDSI CCRYGG 1 cut(s) 210
BstF5I GGATG 2 cut(s) 174, 274
BstFNI CGCG 1 cut(s) 212
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 4 cut(s) 92, 103, 382, 631
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 4 cut(s) 89, 100, 379, 628
BstMCI CGRYCG 2 cut(s) 92, 153
BstMWI GCNNNNNNNGC 6 cut(s) 178, 191, 215, 319, 347, 464
BstSFI CTRYAG 1 cut(s) 522
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 5 cut(s) 172, 337, 469, 472, 622
BstX2I RGATCY 1 cut(s) 628
BstYI RGATCY 1 cut(s) 628
BstZI CGGCCG 1 cut(s) 150
Bsu36I CCTNAGG 1 cut(s) 117
BsuRI GGCC 2 cut(s) 152, 181
BtgI CCRYGG 1 cut(s) 210
BtsCI GGATG 2 cut(s) 174, 274
Cac8I GCNNGC 4 cut(s) 15, 113, 183, 196
CfoI GCGC 1 cut(s) 336
Cfr10I RCCGGY 2 cut(s) 152, 181
Cfr42I CCGCGG 1 cut(s) 213
CseI GACGC 2 cut(s) 134, 302
Csp6I GTAC 1 cut(s) 537
CviAII CATG 1 cut(s) 31
CviQI GTAC 1 cut(s) 537
DdeI CTNAG 5 cut(s) 117, 126, 459, 543, 657
DpnI GATC 4 cut(s) 91, 102, 381, 630
DpnII GATC 4 cut(s) 89, 100, 379, 628
EaeI YGGCCR 1 cut(s) 150
EagI CGGCCG 1 cut(s) 150
EciI GGCGGA 1 cut(s) 181
Ecl136II GAGCTC 1 cut(s) 496
EclXI CGGCCG 1 cut(s) 150
Eco130I CCWWGG 2 cut(s) 453, 621
Eco24I GRGCYC 1 cut(s) 498
Eco52I CGGCCG 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 496
Eco57I CTGAAG 1 cut(s) 552
Eco81I CCTNAGG 1 cut(s) 117
Eco88I CYCGRG 1 cut(s) 361
EcoICRI GAGCTC 1 cut(s) 496
EcoT14I CCWWGG 2 cut(s) 453, 621
EcoT38I GRGCYC 1 cut(s) 498
ErhI CCWWGG 2 cut(s) 453, 621
FaeI CATG 1 cut(s) 34
FaiI YATR 6 cut(s) 32, 67, 279, 387, 599, 609
FaqI GGGAC 1 cut(s) 371
FatI CATG 1 cut(s) 30
FauI CCCGC 2 cut(s) 315, 411
Fnu4HI GCNGC 8 cut(s) 186, 210, 213, 216, 351, 483, 486, 636
FokI GGATG 2 cut(s) 181, 281
FriOI GRGCYC 1 cut(s) 498
Fsp4HI GCNGC 8 cut(s) 186, 210, 213, 216, 351, 483, 486, 636
FspBI CTAG 2 cut(s) 195, 468
GlaI GCGC 1 cut(s) 335
GluI GCNGC 8 cut(s) 186, 210, 213, 216, 351, 483, 486, 636
GsuI CTGGAG 1 cut(s) 210
HaeII RGCGCY 1 cut(s) 337
HaeIII GGCC 2 cut(s) 152, 181
HapII CCGG 3 cut(s) 149, 153, 182
HgaI GACGC 2 cut(s) 134, 302
HhaI GCGC 1 cut(s) 336
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 288
HinfI GANTC 3 cut(s) 83, 359, 655
HpaII CCGG 3 cut(s) 149, 153, 182
Hpy188I TCNGA 3 cut(s) 129, 462, 570
Hpy188III TCNNGA 4 cut(s) 80, 87, 104, 317
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 3 cut(s) 251, 457, 527
HpyCH4IV ACGT 1 cut(s) 433
HpyCH4V TGCA 4 cut(s) 239, 353, 488, 556
HpyF10VI GCNNNNNNNGC 6 cut(s) 178, 191, 215, 319, 347, 464
HpyF3I CTNAG 5 cut(s) 117, 126, 459, 543, 657
HpySE526I ACGT 1 cut(s) 433
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 1 cut(s) 334
KroI GCCGGC 1 cut(s) 181
KroNI GCCGGC 1 cut(s) 183
KspI CCGCGG 1 cut(s) 213
Kzo9I GATC 4 cut(s) 89, 100, 379, 628
LmnI GCTCC 2 cut(s) 191, 415
LpnPI CCDG 8 cut(s) 104, 162, 166, 174, 195, 237, 425, 644
Lsp1109I GCAGC 5 cut(s) 172, 337, 469, 472, 622
LweI GCATC 2 cut(s) 159, 517
MaeI CTAG 2 cut(s) 195, 468
MaeII ACGT 1 cut(s) 433
MaeIII GTNAC 1 cut(s) 648
MalI GATC 4 cut(s) 91, 102, 381, 630
MbiI CCGCTC 2 cut(s) 322, 418
MboI GATC 4 cut(s) 89, 100, 379, 628
MboII GAAGA 4 cut(s) 242, 455, 458, 638
MflI RGATCY 1 cut(s) 628
MhlI GDGCHC 1 cut(s) 498
MluCI AATT 5 cut(s) 51, 515, 571, 583, 641
MlyI GAGTC 2 cut(s) 353, 649
MroNI GCCGGC 1 cut(s) 181
MseI TTAA 2 cut(s) 50, 645
MslI CAYNNNNRTG 1 cut(s) 612
MspA1I CMGCKG 2 cut(s) 212, 439
MspI CCGG 3 cut(s) 149, 153, 182
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 6 cut(s) 178, 191, 215, 319, 347, 464
NaeI GCCGGC 1 cut(s) 183
NdeII GATC 4 cut(s) 89, 100, 379, 628
NgoMIV GCCGGC 1 cut(s) 181
NheI GCTAGC 1 cut(s) 194
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 219
PaeR7I CTCGAG 1 cut(s) 361
PdiI GCCGGC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 8 cut(s) 187, 211, 214, 217, 352, 484, 487, 637
Ple19I CGATCG 1 cut(s) 92
PleI GAGTC 2 cut(s) 353, 649
PpsI GAGTC 2 cut(s) 353, 649
Psp124BI GAGCTC 1 cut(s) 498
PspN4I GGNNCC 1 cut(s) 219
PspXI VCTCGAGB 1 cut(s) 361
PsuI RGATCY 1 cut(s) 628
PvuI CGATCG 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 439
RsaI GTAC 1 cut(s) 538
RsaNI GTAC 1 cut(s) 537
RseI CAYNNNNRTG 1 cut(s) 612
SacI GAGCTC 1 cut(s) 498
SacII CCGCGG 1 cut(s) 213
SaqAI TTAA 2 cut(s) 50, 645
SatI GCNGC 8 cut(s) 186, 210, 213, 216, 351, 483, 486, 636
Sau3AI GATC 4 cut(s) 89, 100, 379, 628
SchI GAGTC 2 cut(s) 353, 649
SduI GDGCHC 1 cut(s) 498
SfaNI GCATC 2 cut(s) 159, 517
SfcI CTRYAG 1 cut(s) 522
Sfr274I CTCGAG 1 cut(s) 361
Sfr303I CCGCGG 1 cut(s) 213
SgrBI CCGCGG 1 cut(s) 213
SlaI CTCGAG 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 5 cut(s) 51, 515, 571, 583, 641
SsiI CCGC 9 cut(s) 166, 172, 210, 212, 215, 221, 322, 397, 418
SspMI CTAG 2 cut(s) 195, 468
SstI GAGCTC 1 cut(s) 498
StyI CCWWGG 2 cut(s) 453, 621
TaiI ACGT 1 cut(s) 436
TaqI TCGA 3 cut(s) 88, 362, 498
TasI AATT 5 cut(s) 51, 515, 571, 583, 641
TauI GCSGC 3 cut(s) 212, 215, 218
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 2 cut(s) 50, 645
Tru9I TTAA 2 cut(s) 50, 645
TseI GCWGC 5 cut(s) 185, 350, 482, 485, 635
TspDTI ATGAA 3 cut(s) 270, 294, 564
TspGWI ACGGA 1 cut(s) 667
XapI RAATTY 3 cut(s) 515, 571, 641
XcmI CCANNNNNNNNNTGG 1 cut(s) 63
XhoI CTCGAG 1 cut(s) 361
XspI CTAG 2 cut(s) 195, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.