Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008682

Physical Location & Seq

Genomic Coordinates Forward (+)

12787302 .. 12791018

Gene Structure 3717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G205200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGAGGAAATGTTGGCTATAGTTCTTTCTATGCTTCTTGTTTTGGCATTAATTCCACTTTATCTATGGAAACGGCGTCAAGATTCTCGATTGCCTCACGATCACGAAGAAGAGCCGCAGGTTGCTCAGAGGGAAGGTGTAGTGCGTGCCACTGGTGCTCGTCGGATGCGAAGGAGGCCGGCTTCTGGAGCAAGCACATCAGCTGCCGCTGCTGCACCAGTTGTAGAAGAAACTGTTGATGGAAGTGATGAGGAAGATGAGGGTGAGTATTATGAAGCCAAAGCATCTAAGAAAAGGGAAAAGAAGCGTCAGGAGCGGGAAGCACAACGACAAGCTGAACAAGCTGCACGTGAATCGAGGAATACAAAACAAGACCGCTATGCTGAAATGCGGAGGAGGAAAGATGAGGAGCGTGAGGCACAGGAGCGTCAGCTGGAGGAAGAAGCCAAGGCTCAGAAGGCTAGGGAGGAGGAAGCTGCTGCATTAGAGTTCGAGAAGTGGAAAGGAGAGTTTTCTATAGATGCTGAAGGTACTACAGAAAATGAAGTGCAGGATGGACATCAGGATTTGCTCTCTGATTTTGTGGAATACATAAAGAAACATAAATGTGTACCCTTGGAAGATCTTGCTGCTGAATTCAAGTTAAGAACTCAGGAATGCATCAATCGGATTACCTCTCTGGAGAGTATGGGGCGACTTTCCGGTGTCATGGATGACAGAGGGAAATACATATACATCTCCCAAGAAGAGATGCAAGCTGTGGCAGACTATATTAAGCGTCAGGGAAGGGTTAGCATTTCACATCTCGCTAGCAAGTCCAACCAGTTCATAGACTTGGAGCCAAAAGCACAATTTGTTGAAGAAATAAGTAGTGCGGCAGAGATAGCTGTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDRGK

Protein Analysis

299

Amino Acids

34.18

Weight (kDa)

5.16

Isoelectric Point (pI)

58.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27120 AT4G27120 AT4G27120
fragaria_vesca	FvH4_3g21950
malus_domestica	MD03G1210000.v1.1 MD11G1224700.v1.1
prunus_persica	Prupe.4G205200_v2.0.a1 Prupe.4G205200_v2.0.a1
pyrus_communis	pycom03g15890 pycom11g19840
rosa_chinensis	RchiOBHm_Chr5g0037801
rosa_laevigata	RLG00000033810
rosa_multiflora	Rmu_sc0005416.1_g000007
rosa_roxburghii	Rroxscaffold_1G00043130
rosa_rugosa	Rorug05G0167200 Rorug05G0167300 Rorug05G0167400 Rorug05G0167500
rosa_samantha	Rh5AG256500 Rh5BG258900 Rh5CG291900 Rh5DG268800
rosa_wichuraiana	Rw5G023780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	109
AccBSI	CCGCTC	1 cut(s)	316
AciI	CCGC	6 cut(s)	116, 207, 316, 376, 391, 875
AcsI	RAATTY	1 cut(s)	635
AcuI	CTGAAG	1 cut(s)	546
AcvI	CACGTG	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	76
AfaI	GTAC	2 cut(s)	532, 612
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	2 cut(s)	640, 860
AluBI	AGCT	7 cut(s)	203, 335, 344, 433, 476, 758, 887
AluI	AGCT	7 cut(s)	203, 335, 344, 433, 476, 758, 887
Alw21I	GWGCWC	1 cut(s)	160
AoxI	GGCC	1 cut(s)	176
ApeKI	GCWGC	7 cut(s)	203, 209, 212, 344, 476, 479, 629
ApoI	RAATTY	1 cut(s)	635
AseI	ATTAAT	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	275
AsuNHI	GCTAGC	1 cut(s)	809
BbrPI	CACGTG	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	7 cut(s)	190, 196, 199, 331, 463, 466, 616
BccI	CCATC	2 cut(s)	233, 548
BceAI	ACGGC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	336, 370
BfaI	CTAG	2 cut(s)	462, 810
BfmI	CTRYAG	3 cut(s)	18, 516, 534
BfuAI	ACCTGC	1 cut(s)	109
BglII	AGATCT	1 cut(s)	622
BmiI	GGNNCC	1 cut(s)	840
BmsI	GCATC	5 cut(s)	156, 293, 511, 669, 741
BmtI	GCTAGC	1 cut(s)	813
BpmI	CTGGAG	3 cut(s)	207, 455, 701
BsaAI	YACGTR	1 cut(s)	350
BsaBI	GATNNNNATC	1 cut(s)	558
BsaHI	GRCGYC	1 cut(s)	76
BsaJI	CCNNGG	2 cut(s)	447, 615
BsaWI	WCCGGW	1 cut(s)	701
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse118I	RCCGGY	1 cut(s)	178
Bse1I	ACTGG	3 cut(s)	157, 218, 823
Bse8I	GATNNNNATC	1 cut(s)	558
BseDI	CCNNGG	2 cut(s)	447, 615
BseGI	GGATG	3 cut(s)	171, 559, 718
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	3 cut(s)	140, 467, 665
BseNI	ACTGG	3 cut(s)	157, 218, 823
BseRI	GAGGAG	3 cut(s)	409, 422, 482
BseXI	GCAGC	7 cut(s)	190, 196, 199, 331, 463, 466, 616
BsgI	GTGCAG	3 cut(s)	198, 330, 569
BshFI	GGCC	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	160
BsiSI	CCGG	2 cut(s)	179, 702
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	662
BsnI	GGCC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	100, 622
BspACI	CCGC	6 cut(s)	116, 207, 316, 376, 391, 875
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	3 cut(s)	139, 466, 664
BspLI	GGNNCC	1 cut(s)	840
BspMI	ACCTGC	1 cut(s)	109
BspOI	GCTAGC	1 cut(s)	813
BspQI	GCTCTTC	1 cut(s)	105
BsrBI	CCGCTC	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	178
BsrI	ACTGG	3 cut(s)	157, 218, 823
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	447, 615
BssMI	GATC	2 cut(s)	100, 622
BssNI	GRCGYC	1 cut(s)	76
BssT1I	CCWWGG	2 cut(s)	447, 615
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	2 cut(s)	105, 741
BstACI	GRCGYC	1 cut(s)	76
BstBAI	YACGTR	1 cut(s)	350
BstC8I	GCNNGC	5 cut(s)	147, 180, 193, 756, 811
BstDEI	CTNAG	4 cut(s)	126, 288, 453, 651
BstF5I	GGATG	3 cut(s)	171, 559, 718
BstKTI	GATC	2 cut(s)	103, 625
BstMBI	GATC	2 cut(s)	100, 622
BstMWI	GCNNNNNNNGC	9 cut(s)	155, 175, 188, 209, 212, 313, 341, 458, 884
BstSFI	CTRYAG	3 cut(s)	18, 516, 534
BstV1I	GCAGC	7 cut(s)	190, 196, 199, 331, 463, 466, 616
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BsuRI	GGCC	1 cut(s)	178
BtsCI	GGATG	3 cut(s)	171, 559, 718
BtsIMutI	CAGTG	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	109
Cac8I	GCNNGC	5 cut(s)	147, 180, 193, 756, 811
Cfr10I	RCCGGY	1 cut(s)	178
CseI	GACGC	4 cut(s)	65, 296, 416, 767
Csp6I	GTAC	2 cut(s)	531, 611
CviAII	CATG	1 cut(s)	709
CviQI	GTAC	2 cut(s)	531, 611
DdeI	CTNAG	4 cut(s)	126, 288, 453, 651
DpnI	GATC	2 cut(s)	102, 624
DpnII	GATC	2 cut(s)	100, 622
Eam1104I	CTCTTC	2 cut(s)	105, 741
EarI	CTCTTC	2 cut(s)	105, 741
Eco130I	CCWWGG	2 cut(s)	447, 615
Eco57I	CTGAAG	1 cut(s)	546
Eco72I	CACGTG	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	635
EcoT14I	CCWWGG	2 cut(s)	447, 615
EcoT22I	ATGCAT	1 cut(s)	662
ErhI	CCWWGG	2 cut(s)	447, 615
FaeI	CATG	1 cut(s)	712
FatI	CATG	1 cut(s)	708
FauI	CCCGC	1 cut(s)	309
FokI	GGATG	3 cut(s)	178, 566, 725
FspBI	CTAG	2 cut(s)	462, 810
GsuI	CTGGAG	3 cut(s)	207, 455, 701
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	2 cut(s)	179, 702
HgaI	GACGC	4 cut(s)	65, 296, 416, 767
Hin1I	GRCGYC	1 cut(s)	76
Hin1II	CATG	1 cut(s)	712
HinfI	GANTC	2 cut(s)	83, 353
HpaII	CCGG	2 cut(s)	179, 702
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	611
Hpy188I	TCNGA	5 cut(s)	129, 165, 456, 577, 669
Hpy8I	GTNNAC	1 cut(s)	611
Hpy99I	CGWCG	1 cut(s)	165
HpyAV	CCTTC	5 cut(s)	128, 165, 451, 521, 780
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	6 cut(s)	215, 347, 482, 550, 660, 754
HpyF10VI	GCNNNNNNNGC	9 cut(s)	155, 175, 188, 209, 212, 313, 341, 458, 884
HpyF3I	CTNAG	4 cut(s)	126, 288, 453, 651
HpySE526I	ACGT	1 cut(s)	349
Hsp92I	GRCGYC	1 cut(s)	76
Hsp92II	CATG	1 cut(s)	712
KroI	GCCGGC	1 cut(s)	178
KroNI	GCCGGC	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	100, 622
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	5 cut(s)	188, 313, 409, 424, 838
Lsp1109I	GCAGC	7 cut(s)	190, 196, 199, 331, 463, 466, 616
LweI	GCATC	5 cut(s)	156, 293, 511, 669, 741
MaeI	CTAG	2 cut(s)	462, 810
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	889
MalI	GATC	2 cut(s)	102, 624
MbiI	CCGCTC	1 cut(s)	316
MboI	GATC	2 cut(s)	100, 622
MboII	GAAGA	8 cut(s)	119, 122, 239, 266, 452, 632, 758, 872
MflI	RGATCY	1 cut(s)	622
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	3 cut(s)	51, 635, 851
MmeI	TCCRAC	2 cut(s)	143, 843
Mph1103I	ATGCAT	1 cut(s)	662
MroNI	GCCGGC	1 cut(s)	178
MseI	TTAA	3 cut(s)	50, 644, 774
MslI	CAYNNNNRTG	1 cut(s)	606
MspA1I	CMGCKG	3 cut(s)	203, 209, 433
MspI	CCGG	2 cut(s)	179, 702
Mva1269I	GAATGC	1 cut(s)	662
MwoI	GCNNNNNNNGC	9 cut(s)	155, 175, 188, 209, 212, 313, 341, 458, 884
NaeI	GCCGGC	1 cut(s)	180
NdeII	GATC	2 cut(s)	100, 622
NgoMIV	GCCGGC	1 cut(s)	178
NheI	GCTAGC	1 cut(s)	809
NlaIII	CATG	1 cut(s)	712
NlaIV	GGNNCC	1 cut(s)	840
NmuCI	GTSAC	1 cut(s)	889
NsiI	ATGCAT	1 cut(s)	662
PciSI	GCTCTTC	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	1 cut(s)	166
PctI	GAATGC	1 cut(s)	662
PdiI	GCCGGC	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	83, 353
PmaCI	CACGTG	1 cut(s)	350
PmlI	CACGTG	1 cut(s)	350
Ppu21I	YACGTR	1 cut(s)	350
PshBI	ATTAAT	1 cut(s)	50
PspCI	CACGTG	1 cut(s)	350
PspN4I	GGNNCC	1 cut(s)	840
PsuI	RGATCY	1 cut(s)	622
PvuII	CAGCTG	2 cut(s)	203, 433
RsaI	GTAC	2 cut(s)	532, 612
RsaNI	GTAC	2 cut(s)	531, 611
RseI	CAYNNNNRTG	1 cut(s)	606
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	50, 644, 774
Sau3AI	GATC	2 cut(s)	100, 622
SduI	GDGCHC	1 cut(s)	160
SfaNI	GCATC	5 cut(s)	156, 293, 511, 669, 741
SfcI	CTRYAG	3 cut(s)	18, 516, 534
SmiMI	CAYNNNNRTG	1 cut(s)	606
Sse9I	AATT	3 cut(s)	51, 635, 851
SsiI	CCGC	6 cut(s)	116, 207, 316, 376, 391, 875
SspMI	CTAG	2 cut(s)	462, 810
StyI	CCWWGG	2 cut(s)	447, 615
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	3 cut(s)	88, 356, 492
TasI	AATT	3 cut(s)	51, 635, 851
TauI	GCSGC	3 cut(s)	118, 209, 878
TfiI	GAWTC	2 cut(s)	83, 353
Tru1I	TTAA	3 cut(s)	50, 644, 774
Tru9I	TTAA	3 cut(s)	50, 644, 774
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	889
TseI	GCWGC	7 cut(s)	203, 209, 212, 344, 476, 479, 629
Tsp45I	GTSAC	1 cut(s)	889
TspDTI	ATGAA	3 cut(s)	288, 558, 817
TspRI	CASTG	1 cut(s)	157
VspI	ATTAAT	1 cut(s)	50
XapI	RAATTY	1 cut(s)	635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	63
XspI	CTAG	2 cut(s)	462, 810
Zsp2I	ATGCAT	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.