Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008682

Physical Location & Seq

Genomic Coordinates Reverse (-)

22376644 .. 22380347

Gene Structure 3704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g19840.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTTGGCAATTTTTCTTTCCATGCTTCTTTTTTTGGGATTAATTCCACTATATCTATGGAAACGCCGCCAAGATTCTCGACCGCCGCATGAACACGAAGAAGAACCTCAGGTTGCTCAGAGGGAGGCGGTAGTGCGTGCGCCTGGCGGTCGCCGGATGCGTAGGAGGCCGGCTTCTGGAGCAAGCACATCATCAGCTGCTGCACCAGCTGTAGAAGAAACCATTGATGGAAGTGACGAGGAAGATGTTGAGGGTGAGTATGAAGACAAAGCATCCAAGAAGAGGGAAAAGAAGCGTCAAGAGCGGGAAGCACAACGACAAGCTGAACAAGCTGCACGTGAATCAAGGGTAACAAAACAAGACCGCTATGCTGAAATGCGGAGGAGGAAAGATGAGGAGCGTGAGGCACAGGAGCGTCAGCTGGAGGAAGAAGCCAAAGCTCAAAAGGCTAGGGAGGAGGAAGCTGCTGCTTTAGAGTTTGAAAAGTGGAAAGGTGAGTTTTCAATAGACGCTGAAGGTACCACAGAAAATGAAGTGCAGGATGGACGTCAGGATTTGCTGTCTGATTTTGTCGAATACATAAAGAAACATAAATGCATTCCCTTGGAAGATCTTGCTGCTGAATTTAAGTTAAGGACTCAGGAATGCATCAATCGAATTACCAATCTGGAGAGTATGGGGCGACTTTCGGGAGTCATGGACGACAGAGGGAAGTACATATACATCTCCCAAGAAGAGATGCAAGCTGTGGCAGACTACATTAAGCGTCAAGGAAGGGTAAGCATTTCGCATCTCGCTAGCAAGTCCAACCAGTTCATAGACTTGGAGCCCAAAGCGCAGTTTGTTGAAGAAACCGGTACTGGGGCGGAGATAACTGTTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDRGK

Protein Analysis

295

Amino Acids

33.78

Weight (kDa)

5.22

Isoelectric Point (pI)

58.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27120 AT4G27120 AT4G27120
fragaria_vesca	FvH4_3g21950
malus_domestica	MD03G1210000.v1.1 MD11G1224700.v1.1
prunus_persica	Prupe.4G205200_v2.0.a1 Prupe.4G205200_v2.0.a1
pyrus_communis	pycom03g15890 pycom11g19840
rosa_chinensis	RchiOBHm_Chr5g0037801
rosa_laevigata	RLG00000033810
rosa_multiflora	Rmu_sc0005416.1_g000007
rosa_roxburghii	Rroxscaffold_1G00043130
rosa_rugosa	Rorug05G0167200 Rorug05G0167300 Rorug05G0167400 Rorug05G0167500
rosa_samantha	Rh5AG256500 Rh5BG258900 Rh5CG291900 Rh5DG268800
rosa_wichuraiana	Rw5G023780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	550
Acc65I	GGTACC	1 cut(s)	518
AccB1I	GGYRCC	1 cut(s)	518
AccBSI	CCGCTC	1 cut(s)	304
AciI	CCGC	9 cut(s)	67, 83, 86, 128, 147, 304, 364, 379, 866
AcsI	RAATTY	1 cut(s)	623
AcuI	CTGAAG	1 cut(s)	534
AcvI	CACGTG	1 cut(s)	338
AcyI	GRCGYC	1 cut(s)	547
AfaI	GTAC	3 cut(s)	520, 716, 859
AfiI	CCNNNNNNNGG	3 cut(s)	176, 282, 861
AgeI	ACCGGT	1 cut(s)	854
AgsI	TTSAA	3 cut(s)	482, 504, 848
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	8 cut(s)	197, 209, 323, 332, 421, 440, 464, 746
AluI	AGCT	8 cut(s)	197, 209, 323, 332, 421, 440, 464, 746
AlwNI	CAGNNNCTG	1 cut(s)	200
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	6 cut(s)	197, 200, 332, 464, 467, 617
ApoI	RAATTY	1 cut(s)	623
AseI	ATTAAT	1 cut(s)	41
AsiGI	ACCGGT	1 cut(s)	854
Asp718I	GGTACC	1 cut(s)	518
AspLEI	GCGC	2 cut(s)	142, 838
AsuHPI	GGTGA	2 cut(s)	266, 506
AsuNHI	GCTAGC	1 cut(s)	797
AxyI	CCTNAGG	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	518
BanII	GRGCYC	1 cut(s)	831
BarI	GAAGNNNNNNTAC	2 cut(s)	704, 736
BbrPI	CACGTG	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	270
BbvI	GCAGC	6 cut(s)	184, 187, 319, 451, 454, 604
BccI	CCATC	2 cut(s)	221, 536
BciT130I	CCWGG	1 cut(s)	144
BfaI	CTAG	2 cut(s)	450, 798
BfmI	CTRYAG	1 cut(s)	210
BglII	AGATCT	1 cut(s)	610
BisI	GCNGC	8 cut(s)	67, 86, 198, 201, 333, 465, 468, 618
BlsI	GCNGC	8 cut(s)	68, 87, 199, 202, 334, 466, 469, 619
Bme1390I	CCNGG	1 cut(s)	144
BmiI	GGNNCC	2 cut(s)	520, 828
BmrFI	CCNGG	1 cut(s)	144
BmrI	ACTGGG	1 cut(s)	870
BmsI	GCATC	5 cut(s)	147, 281, 657, 729, 799
BmtI	GCTAGC	1 cut(s)	801
BmuI	ACTGGG	1 cut(s)	870
BpiI	GAAGAC	1 cut(s)	270
BpmI	CTGGAG	3 cut(s)	198, 443, 689
BsaAI	YACGTR	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	547
BsaJI	CCNNGG	1 cut(s)	603
BsaWI	WCCGGW	1 cut(s)	854
Bsc4I	CCNNNNNNNGG	3 cut(s)	176, 282, 861
Bse118I	RCCGGY	2 cut(s)	169, 854
Bse1I	ACTGG	2 cut(s)	811, 865
Bse21I	CCTNAGG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	603
BseGI	GGATG	3 cut(s)	162, 272, 547
BseLI	CCNNNNNNNGG	3 cut(s)	176, 282, 861
BseMII	CTCAG	3 cut(s)	122, 131, 653
BseNI	ACTGG	2 cut(s)	811, 865
BseRI	GAGGAG	3 cut(s)	397, 410, 470
BseXI	GCAGC	6 cut(s)	184, 187, 319, 451, 454, 604
BsgI	GTGCAG	3 cut(s)	186, 318, 557
Bsh1285I	CGRYCG	2 cut(s)	83, 151
BshFI	GGCC	1 cut(s)	169
BshNI	GGYRCC	1 cut(s)	518
BshTI	ACCGGT	1 cut(s)	854
BsiEI	CGRYCG	2 cut(s)	83, 151
BsiSI	CCGG	3 cut(s)	154, 170, 855
BslI	CCNNNNNNNGG	3 cut(s)	176, 282, 861
BsmI	GAATGC	2 cut(s)	597, 650
BsnI	GGCC	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	831
Bsp143I	GATC	1 cut(s)	610
BspACI	CCGC	9 cut(s)	67, 83, 86, 128, 147, 304, 364, 379, 866
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	3 cut(s)	121, 130, 652
BspLI	GGNNCC	2 cut(s)	520, 828
BspOI	GCTAGC	1 cut(s)	801
BspT107I	GGYRCC	1 cut(s)	518
BsrBI	CCGCTC	1 cut(s)	304
BsrFI	RCCGGY	2 cut(s)	169, 854
BsrI	ACTGG	2 cut(s)	811, 865
BssAI	RCCGGY	2 cut(s)	169, 854
BssECI	CCNNGG	1 cut(s)	603
BssMI	GATC	1 cut(s)	610
BssNI	GRCGYC	1 cut(s)	547
BssT1I	CCWWGG	1 cut(s)	603
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	877
Bst6I	CTCTTC	2 cut(s)	275, 729
BstACI	GRCGYC	1 cut(s)	547
BstBAI	YACGTR	1 cut(s)	338
BstC8I	GCNNGC	5 cut(s)	138, 171, 184, 744, 799
BstDEI	CTNAG	3 cut(s)	108, 117, 639
BstF5I	GGATG	3 cut(s)	162, 272, 547
BstHHI	GCGC	2 cut(s)	142, 838
BstKTI	GATC	1 cut(s)	613
BstMBI	GATC	1 cut(s)	610
BstMCI	CGRYCG	2 cut(s)	83, 151
BstMWI	GCNNNNNNNGC	7 cut(s)	166, 179, 206, 301, 329, 446, 835
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	6 cut(s)	184, 187, 319, 451, 454, 604
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
Bsu36I	CCTNAGG	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	169
BtsCI	GGATG	3 cut(s)	162, 272, 547
Cac8I	GCNNGC	5 cut(s)	138, 171, 184, 744, 799
CaiI	CAGNNNCTG	1 cut(s)	200
CfoI	GCGC	2 cut(s)	142, 838
Cfr10I	RCCGGY	2 cut(s)	169, 854
CseI	GACGC	4 cut(s)	284, 404, 518, 755
Csp6I	GTAC	3 cut(s)	519, 715, 858
CspAI	ACCGGT	1 cut(s)	854
CviAII	CATG	3 cut(s)	22, 89, 697
CviQI	GTAC	3 cut(s)	519, 715, 858
DdeI	CTNAG	3 cut(s)	108, 117, 639
DpnI	GATC	1 cut(s)	612
DpnII	GATC	1 cut(s)	610
Eam1104I	CTCTTC	2 cut(s)	275, 729
EarI	CTCTTC	2 cut(s)	275, 729
EciI	GGCGGA	1 cut(s)	881
Eco130I	CCWWGG	1 cut(s)	603
Eco24I	GRGCYC	1 cut(s)	831
Eco57I	CTGAAG	1 cut(s)	534
Eco72I	CACGTG	1 cut(s)	338
Eco81I	CCTNAGG	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	603
EcoT22I	ATGCAT	2 cut(s)	599, 650
EcoT38I	GRGCYC	1 cut(s)	831
ErhI	CCWWGG	1 cut(s)	603
FaeI	CATG	3 cut(s)	25, 92, 700
FatI	CATG	3 cut(s)	21, 88, 696
FauI	CCCGC	1 cut(s)	297
Fnu4HI	GCNGC	8 cut(s)	67, 86, 198, 201, 333, 465, 468, 618
FokI	GGATG	3 cut(s)	169, 259, 554
FriOI	GRGCYC	1 cut(s)	831
Fsp4HI	GCNGC	8 cut(s)	67, 86, 198, 201, 333, 465, 468, 618
FspBI	CTAG	2 cut(s)	450, 798
GlaI	GCGC	2 cut(s)	141, 837
GluI	GCNGC	8 cut(s)	67, 86, 198, 201, 333, 465, 468, 618
GsuI	CTGGAG	3 cut(s)	198, 443, 689
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	3 cut(s)	154, 170, 855
HgaI	GACGC	4 cut(s)	284, 404, 518, 755
HhaI	GCGC	2 cut(s)	142, 838
Hin1I	GRCGYC	1 cut(s)	547
Hin1II	CATG	3 cut(s)	25, 92, 700
Hin6I	GCGC	2 cut(s)	140, 836
HinP1I	GCGC	2 cut(s)	140, 836
HinfI	GANTC	4 cut(s)	74, 341, 637, 693
HpaII	CCGG	3 cut(s)	154, 170, 855
HphI	GGTGA	2 cut(s)	266, 506
Hpy188I	TCNGA	2 cut(s)	120, 565
Hpy188III	TCNNGA	7 cut(s)	78, 177, 299, 551, 641, 668, 690
HpyAV	CCTTC	2 cut(s)	509, 768
HpyCH4III	ACNGT	1 cut(s)	877
HpyCH4IV	ACGT	2 cut(s)	337, 547
HpyCH4V	TGCA	6 cut(s)	203, 335, 538, 597, 648, 742
HpyF10VI	GCNNNNNNNGC	7 cut(s)	166, 179, 206, 301, 329, 446, 835
HpyF3I	CTNAG	3 cut(s)	108, 117, 639
HpySE526I	ACGT	2 cut(s)	337, 547
Hsp92I	GRCGYC	1 cut(s)	547
Hsp92II	CATG	3 cut(s)	25, 92, 700
HspAI	GCGC	2 cut(s)	140, 836
KpnI	GGTACC	1 cut(s)	522
KroI	GCCGGC	1 cut(s)	169
KroNI	GCCGGC	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	610
LmnI	GCTCC	4 cut(s)	179, 397, 412, 826
Lsp1109I	GCAGC	6 cut(s)	184, 187, 319, 451, 454, 604
LweI	GCATC	5 cut(s)	147, 281, 657, 729, 799
MaeI	CTAG	2 cut(s)	450, 798
MaeII	ACGT	2 cut(s)	337, 547
MaeIII	GTNAC	2 cut(s)	233, 349
MalI	GATC	1 cut(s)	612
MbiI	CCGCTC	1 cut(s)	304
MboI	GATC	1 cut(s)	610
MflI	RGATCY	1 cut(s)	610
MhlI	GDGCHC	1 cut(s)	831
MluCI	AATT	4 cut(s)	9, 42, 623, 657
MlyI	GAGTC	2 cut(s)	631, 702
MmeI	TCCRAC	1 cut(s)	831
Mph1103I	ATGCAT	2 cut(s)	599, 650
MroNI	GCCGGC	1 cut(s)	169
MseI	TTAA	4 cut(s)	41, 627, 632, 762
MspA1I	CMGCKG	3 cut(s)	197, 209, 421
MspI	CCGG	3 cut(s)	154, 170, 855
MspR9I	CCNGG	1 cut(s)	144
Mva1269I	GAATGC	2 cut(s)	597, 650
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	7 cut(s)	166, 179, 206, 301, 329, 446, 835
NaeI	GCCGGC	1 cut(s)	171
NdeII	GATC	1 cut(s)	610
NgoMIV	GCCGGC	1 cut(s)	169
NheI	GCTAGC	1 cut(s)	797
NlaIII	CATG	3 cut(s)	25, 92, 700
NlaIV	GGNNCC	2 cut(s)	520, 828
NmuCI	GTSAC	1 cut(s)	233
NsiI	ATGCAT	2 cut(s)	599, 650
PcsI	WCGNNNNNNNCGW	1 cut(s)	157
PctI	GAATGC	2 cut(s)	597, 650
PdiI	GCCGGC	1 cut(s)	171
PfeI	GAWTC	2 cut(s)	74, 341
PinAI	ACCGGT	1 cut(s)	854
PkrI	GCNGC	8 cut(s)	68, 87, 199, 202, 334, 466, 469, 619
PleI	GAGTC	2 cut(s)	631, 701
PmaCI	CACGTG	1 cut(s)	338
PmlI	CACGTG	1 cut(s)	338
PpsI	GAGTC	2 cut(s)	631, 701
Ppu21I	YACGTR	1 cut(s)	338
PshBI	ATTAAT	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	142
PspCI	CACGTG	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	520, 828
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	610
PvuII	CAGCTG	3 cut(s)	197, 209, 421
RsaI	GTAC	3 cut(s)	520, 716, 859
RsaNI	GTAC	3 cut(s)	519, 715, 858
SaqAI	TTAA	4 cut(s)	41, 627, 632, 762
SatI	GCNGC	8 cut(s)	67, 86, 198, 201, 333, 465, 468, 618
Sau3AI	GATC	1 cut(s)	610
SchI	GAGTC	2 cut(s)	631, 702
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	1 cut(s)	831
SfaNI	GCATC	5 cut(s)	147, 281, 657, 729, 799
SfcI	CTRYAG	1 cut(s)	210
Sse9I	AATT	4 cut(s)	9, 42, 623, 657
SsiI	CCGC	9 cut(s)	67, 83, 86, 128, 147, 304, 364, 379, 866
SspMI	CTAG	2 cut(s)	450, 798
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	603
TaaI	ACNGT	1 cut(s)	877
TaiI	ACGT	2 cut(s)	340, 550
TaqI	TCGA	3 cut(s)	79, 573, 655
TasI	AATT	4 cut(s)	9, 42, 623, 657
TatI	WGTACW	1 cut(s)	714
TauI	GCSGC	2 cut(s)	69, 88
TfiI	GAWTC	2 cut(s)	74, 341
Tru1I	TTAA	4 cut(s)	41, 627, 632, 762
Tru9I	TTAA	4 cut(s)	41, 627, 632, 762
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	6 cut(s)	197, 200, 332, 464, 467, 617
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	4 cut(s)	105, 276, 546, 805
VspI	ATTAAT	1 cut(s)	41
XapI	RAATTY	1 cut(s)	623
XcmI	CCANNNNNNNNNTGG	1 cut(s)	54
XspI	CTAG	2 cut(s)	450, 798
ZraI	GACGTC	1 cut(s)	548
Zsp2I	ATGCAT	2 cut(s)	599, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.