FvH4_3g22520

Nucleolar pre-ribosomal-associated protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002923
Physical Location & Seq
Reverse (-)
15523786 .. 15536307
12522 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22520.t8

Sequence Viewer

Length: 7635 bp
ATGTTGGGTGAAGACTATGACAGTGAGGTTGAGGGAGACGAAATGCCGAGTGTAGAGGTTAGAGAGAATTACGAAGCTAAAGTTAAACAGCTACTGGTTGAGATTACATCTAGTGAGATTAAGTTATGCTCTTCGGGTACGAAAGGGTTTATTAAGTTGCTGAAAGGTGATTCTGGAGGTGAATTGCTGTATTACTATGTGCGAAATTCACCTCAGTGCTCTGAGCTTTTGGCGGCTTGGAATCTCCGGCGAGAGAAGGCGGGGTTGTTTTATGTGTTTAGGTTGGTTACTGCTGTTTTGAGTCATCCTGATGGGGTGTATGAGGCCAATGATATGGGGAGGATGGGGGTGAGTAGGGGGTTGGATAAGTTTGCGCGGTTGATTATTGACCAGAAGTTGGAAGATGTGCAGATGGAGTTGAAGAGTAGTGAAGGGAAGCGCCAGAAGGCGGCGCTTTTGCTTTTGGCTTCGATTGTGAGGCGTGGGTCGGTTTTGGCGTCTGAGGTTGAAAAGAAGTTTGATTTTAAGCTGCAGGGTTTTTGCAAGTTGGGTGTGTGTAAATTGAGGGGGAATGAGGAAAGGACGAAGCGGTCGTTGAGGAAGTCGTTTGTTGCGTTTGCTATGTCGTTTCTGGAGGTCGGAGCGCCGGGGTTGTTGAGGTCGGTTATACGGCAGAAGGAAATGTATTCTTGCGTCCTCCGGTGGCTCGAGAACGATGATGAGGAGACAGTTATATATATTCTGTCCACATTGCAGAACAGGATACTTGTTGAGGGTTCATCGGTTCCCCCTGCTATTCGGAGTGTTTTGTTTGGGAGTGGTACTTTAGAACAATTGGCAAATATTTGTGGAAGGGTGAATGGTGGACCTTCTGCAGAATTATCATACAGGGTCTTACTTATGGTTTGCATTGATCCATTTAATGGCCTGATGGCGGATTCAAAGAGACACCTGAAGGGAAATTTAAAGCGGCAAATGGACTTGATGAAGAAGCTTAAGGCAACGGAGATTGGCTATCACAGGGATCTGCTCTTGGCTGTTGTTAAAGGGAGACCCTCTCTTGGTGCAGCATACATGGAAGAGTTCCCTTACAAACTTGAAGATTATTCATCACCCAAATGGTTTTCTGTTGTTACTCTAGCAGCAAACTTGGTTTCCTCAGTGGGTAGCGGGCCCCCAGCCTTGTTTGACAATGTGGATGTGCAGGATGTCATGAAATGCTTGTATCCTCCCAAGTTCAAATGCAATAAAGGGCTGCTTCACTCTGATTTTCTAGTGAAGCATGGAACGTTAAGGCATCTTTTAGAAGCACTCAAGTTGATAGATTCCTTCCTTGGTGTTTTAAACCGTAGAGACCAACATGTTTCAGAATCTCTCAAGCAAGAATTCCAAAATGAAGTCCGAAGCTTGCTTCCAGATCCTGAACTTTTAAAGACTCTGCTCTCTCCTATGAGTAGCAACACAAGAAAGAGGACAGCAGATCTGGAGAAGTTCCCAGAACATAGCCTGAAGAATTTGAAAAAATTGAAAACGGATTTTGGAAACAAGGACTCGGATATCGTTGTAGGCGGTATAAGTTTTGGTCCAGATATTGTTCCGTCCGAAAATGAAAATAGTCTTGTGAATGTTCTGGCAGATCTTTGGGGTTTCGATCTGTGCGCCTCACCTATTACTGCACTCAAGGACGCAGACTTATACTTCTACTGTAGGCTGCTCGATGTTTTCAAAATATATCTTCGGATAATGCCCACTGGCTTGGAGGGCTCATTTGAGTTCCTTATGAAACTCCTAAGCAGTCCTTTAGCATCACAAAGTAATCTACAGGGCTCACTTTTGTCTTTGCTTATAGAATACATTGGATGGTCTCCAGGGAATAGAACACCAATCAAGACTCCACCCATGATGTACAAACATTTACAGACATTGATGAAGTTACTGATTTTTTCACCACTCAATGACATAAAAGATCAAGCATACCGTCTTGCACAAGCAGCTATGCTAAGTACTGGCGCTTTTGACGGAAACCAACATGAAATTGCATCATGGTTCTTGTTTATACCGGGTTCTGATAGGGGACAGTCTTCGGTTGAAGTCCTGGGAACGGGAGTATTACAAAGTTTGTCTAATGCTGTCATCTCATTCTTATCTGATGCTGTTTCTACTACAGGGAAGAATATCTTCAAGAATTGGGATATTATAATGAAGCGTGATACCTACCATTTGGAAACTGTTAAAGATGTGTCACCTCAGGCCCCTCTAATCTTACGGGTGCTGCAGAATTGTCTAAGGTTGCTTGATTCTGGATCTGGTACTTTTACATTACCTGAGAAGACAATGATATCTACCTATGTATGCAATACACTGAAATATATCTTGAAAACTCAGGTTGATGCAAGGTTTCTATCTTCTATTATTTTCTCACTCTTGATTGAGAGACTTGGTGACCGTTATGCCACTCGTGAGTCAAGGGACAACTGTGAGTGGAGGCCCTTGAACAGTTTATTGTTATTTTCACAGAGTATATCTGACCGTAAAGTTTGTTGCATTTCTTCTATTGACAATATGGCTAAGCCTGCTGGTAGTTCTTTTGCACTTGCTCTTGAGGATGTTAAAAGACTTGCAAAGAGTGGGAGTGATGGTGAAATAGCTGGAATAACCAAAGCCTTTTTTTCCTCAATTATCTGTACAACACCTGATGAAATATTAGTCAACTTTCCAACAATCATGGGAATTTCACAGTGCCTTTTTGGTTTTCCACTCACTCTCTTTTCATCAATTTTCTTTCTTGAACAAACCCTTCTCCCCAGTGTTTCCAAGTTGTGGCCTGAAGTTTTTTTTCGTGGTCTTAGCATGGCTCTAACCAATATCTCTTGCAAAGGAAGAAATGGAATTGCCTGTGGCTCTCCTGATCAAAGTGGAGCAATATATGGCCAAAATTCTGATGCAAATGAAGCTGCTGCTATTGCTTTCAGTTTATTCTTGATGAAGGCACCTTTCCATGTTTTGTTCCCTGCTATTATGTGCATCGATGGCCCTTATGCATCAGAGCCCTCACAGATACAAGACCTGCTTCTGGCTAAACTGTCCGACTTTGCAACTGATTACCATCTTATTTCCTATTTGCGGCTTGTGCTATTTTGGCTTTATCAGATACGTTCATCTTGTAGAATTGAAGAGTTAGTTGATTTCCGGCAACTTTCTGAGATTTGCTCAGTTCTGGTGGAGAAATTATTGTCAAGTCTATTGGTTTTGAAGGCTGATTCTGATTCTTCCAGAATTCTAAATCTATCAACTCATGATATTCAAAAGGTGGCTGAAACTATCTTCTATCATCCTGCAATGATAGCATCATTATCCTGCCCTTTGGAGTGTAGCGAAGACTTAGCAGAGGGTAACCTACCAGACAACGTGGACGCTCTCCTCAATTTTTCAAGGGGGAAAGTTCATAGATTAGATCATCATGCCTTGGATATATTGGCCACAACTTGCAAGTACTTGTTTTCTTTGTGCAATGACCACCAATTTACAACTGAAGTACAAGATCAGGCTGGTAAAAAGTTTGTGAAAACTTTCAACATCTTGGTTAATAAGCTCTTTCAGGAAGTCAAGGTCAAATTTGATCTCAGCATTAGAAGTAATAATGGTATGGCTTTCCTCCCAACATTTTATGCTTTACATGCTTTGAGTGGTTATATATCTGCATTTGAGCTTCTTGAACTAGCGCATTGGATGTTTAATAGAGTTGATATGGATGGCAACCAGAAATCTGCTATTTCTTTTGGATTTTGGATTGCTGGTGGTGCTTTTAGAAATCTGTCTAATTATTTGCAGCAGCCAAATACAAAGAGAAAGGCATTTGATTTGTTCTGGAAGATGGAAGAAAACAATATTAACAATGACATTGTTGAAGCAGTCTATATTAAGATATCAAAGTTATCCTTGCTTTTGGAATCAGAAGTCACAGATCATTGCTTGCTGGAAGCTATGAATGTCGTATACAGGCAGAAATCTATGCAGAAGTGTACTTTTCATCCATTAAAAATAGTGATGTTGAGAGTTATAGCAACCACTCCAGTAGAAATGCTTTCCCACTGCATTTACAGAACAAGCAAGACGAAAGCTAGGTTGTTGTCTCGTCTTATTGATATGAGCTCTATGCATTTGTCCACCTTTGGGTACTTACTGTTTGGTACTCTAGACACTAGTTCACTACATAAAGGTGATGTGAGATATGCCCTAGCCCTTTCAGATGACAACTATATGATGCTTCTGCCTTCTGCTGTGGCCTACTTGAATTCAGGTTTAATGAAACTTGGAAAGCCGTGTTACAGCCAACTTAGAAATATCCCTTCCTTTTATTCAAAGATTATTTTGGATGGTCTCCTTCATTGGAAGAATTTTGTTTCTCATGATGTGTTTCATGAGGAATTTGGGGAGGTTTTGCCATCATCTGCTGAAGAAGTTCTTAACCTCATTAATGATAGTCTTCTTGGCAAAACGATTTGTATGATGCGCTATCACTATGCTTTGAATGCAGATTCAATAGAGAGGAAAGACCAATTAAAGCATTTCAGATCCTTTTTCCCACCTTCTACTGGAAATGAGGAGCTACTATACTGGGATGTTGGTGGATTAGGTTCTCATTCTTTCAATGAAACACTAAACCTTGTAAATAAAGTTTATGCAAAGGTCTCATTTTGTAGGATGCTGTTATTCCCCAAAGACACTCAGGTTCACTCTCTTTCAGCTGAAGCCGATGGGAACTTAAGAGATATTCCTCTGGACATGGGATATAATGGAGGTAACTCCTCACAAATGCAGTTTTTGAACATATTGGTGGATATGTGGCAATGCATTGTTAAAAGAGTTCCTTCAGTATTTTGTAGCACAGATAGTTCATCATTGTTGAGATACCTAGAAATTCTCATATTGAAAATCATTTTTGAACTGTCTAGAGAGATGCATGATGGTCTAATCAGAGTACAGTCTATCCCCTTCCTAGAGAACTTGATGAAACTAGCCCTTCTTCATAGGTTTGACGATCCACCAACTTTGCAAATGCTCCGTGATCTTCTGAGTTTTCTATCTGGGGGGATATTTTCACGTGTTCCCTATCTTCAGCTTTTACTTGCACACTCTCAATTTGTGCCTACTATTCGTTCAATAATCAAACCATCACATTCTTCCCATGTTGGGACATTTTCTAGGCCTATGTCTAGCATTCTTAGATCACCTGTTTTCCTTACCTCAAACCAAAATGAAGATGATGCAGAATGCCATCTGGAAACATCCGAGCTGTATGTAAAGCAGTTGGAGGTTATCAAATTACTCCGGACACTCCTTTTCAAGGTTCAGCAGGATGGTTTTGACTCTGGAAAAGATTTAGGAATTGATCTTAGGGAAGTTCATTTACTGCTTTTGTCTTCTTTTGGTGCAACACTTAATGAAACTGATGTGGAGATATACAATCTGATGCGCACAATTGAGTGTATCGATGGTTTGGAGCATGTCAAATTTGCTGGAATGGATTACCTTTGGGGTAGTGCTGCATTGAAGATAGAAAAGGAACGAAATCTGGAGCAGAGTTTGTCTTATGATACAATGAATGATGCTGAAGCAGTAAAAGAATACCACAGAAATCAACTTAGAGAAAATCTTTCGATTGACCCCAAAATATGTGCATCCACAGTGCTATATTTTCCCTACCAATTAGCGGCATCTGATGAACTATTATCCTTGAACAAGTTTCAAACAGATCTTGTTGATGATCTTCCTGTGTTAAATTGCCCCGATGTTGACACTAAAGCAAGATACAATCCTATTTTCATATTGCGCTTCTCTATGCATTGTCTTTCAGAAGGTTTTATTGAACCGTTAGAATTTGCTGGTTTAGGCTTACTTGCTATTGCCTTTATGAGTATTTCATCACCTAGCGACAAGATAAGAAGTTTGGGTTATGAAACTCTTGGAACATTGCAGGACGTATTGAAGACATGTCAAAAGAGGAAGGGAATCACGGAAATAAAGCTTCTGTTGCTTTTTGTGGAAAATGGTATACAACAAATAGGGCAGAGAATCTCTTCTGTAAATGCTATTTTTGCTGCAGAGACATCCCTCATATTATTAGATACTTCACATGAACATTATGCGACTTTACTTACGCTTTTGAAGAGATCCTCTGCTTTGAACACGAAGATTGTACCTTTCTTTAGCAATTTTTTCTGGAGTTCCTCGGTTAACTTCAGATCAGAAAGGTTGTGGATACTGCGGATATTATATGTGGGGCTGAACTTTGATGATGATGCACATGTTTATATCAAGAATTCAATTCTTGAGACTTTGTTGAGTTTCTATGGTTCTCCACTTTCAGATAAGGAGTCCAAGGAACTAATTCTTCAGGTAGTGAAGAAGTCAATTAAACTGCATAAGTTGGCTCGTCATCTGGTTGAAAAATGCGGTCTGATTCCATGGTTATCATCTCTTCTCTCAATATCCAGTGGAAGTCGTCTTGAAGATGAAACTTTGTGTTTCTTGCAGTTGGGTGTGGTATCAGAGGTGGTCAATGATGTTTCTTCAAGAAACATTACTGAATGGTTGCAGAACAATGCCCTTGAGCAGCTCATGGAGTTAACGTCTCATCTGTACAAATTTCTTGCGACTGATGTGACTTTGATGACAGATAATGTTACAGCCATCAATCGAATTCTTGAAACGATAATATCTACATTCAAGTTATCCCAAACGAGGACGATATATCAGCCACATTTTGTTGTATCATTCGACGGTTTATATAGAATATATAAAGCAGTGAAGGTCTACAATAGTGCAAGATCATGTGCTACTGTAGAGTTTAGCCTTAAAGCAATTCTCATGAGTGCCCCTCCAGCTTCCATCTTTTATGTGAGTGGTGAAAAGCTTTCAAGTTTTATCATGTGGGCAATCTCCAGTGCTGTAGAAGCAGACTCTGCTGCTATGCTTCAATTCATTGAATCTCATCAAGGCCTCACTACTATTCCAGAGGAAAAAGAGGTGCATAAGAATTCATTGATTTCAAAACTATTGCGTTGGCTAACTGCAACTGTAATTCTTGGAAAGCTTGACTGGACATCCAGTGACGTGGATCCTGAGTTCTCGAAAAGTTTGAATATGGAAAGTTTGCAGTCTTTGATAACTCACACTGACAAGCATTGTGGAGAAAGGGGCAGAAAAAGATATGGTGGCGAAGAGATCTTGGCATCAGCAATACTCTACCTTCAGCAGCTCTCTGGAAAAAATTACGAAATGCTACCCTCTGTCATTGCTGCACTTAGTCTTCTCCTTTCCAATGGCTCCATTAGTGCAGGTTTCTTGCATGATAATGAAACTGTGCAATCACTTTGGCTGAAGATACGTTGCCCTGATGAAGCTAATTTAGCCTGGAGATGGTCATTTGACCAGCCATGGAAGGATCCAATGTTGGAAGTCACTGATTCCCAGAAGATGAAGGAACTCCATGCTTGTGAATTACTTTTAGTTATATTTTCGAATCTGCTAGGAAAACAGTCATCAGAATTTCAGGTTTCATCAACACAGGATATAGATAGATTTGGTGTATTTGAATGGGAAAGAAGTATCATAACTTCTCAGAACTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NopRA1 Npa1

Protein Analysis

2545

Amino Acids

286.38

Weight (kDa)

6.21

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NopRA1 PF16201 1563 - 1753 8.5e-42 Nucleolar pre-ribosomal-associated protein 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2198
AasI GACNNNNNNGTC 1 cut(s) 589
Acc16I TGCGCA 1 cut(s) 5477
Acc36I ACCTGC 2 cut(s) 3075, 7331
AccB1I GGYRCC 1 cut(s) 2989
AccB7I CCANNNNNTGG 3 cut(s) 397, 923, 2820
AccI GTMKAC 3 cut(s) 3996, 6055, 6816
AccII CGCG 1 cut(s) 376
AccIII TCCGGA 1 cut(s) 5331
AclI AACGTT 1 cut(s) 1289
AcoI YGGCCR 2 cut(s) 2929, 3477
AcvI CACGTG 1 cut(s) 5105
AcyI GRCGYC 1 cut(s) 497
AflII CTTAAG 2 cut(s) 995, 4765
AflIII ACRYGT 4 cut(s) 1360, 5104, 5993, 6307
AhlI ACTAGT 1 cut(s) 4202
AjiI CACGTC 1 cut(s) 7117
AjnI CCWGG 3 cut(s) 1867, 2094, 7415
AleI CACNNNNGTG 1 cut(s) 214
AloI GAACNNNNNNTCC 2 cut(s) 7112, 7144
Alw21I GWGCWC 2 cut(s) 221, 4154
AlwNI CAGNNNCTG 3 cut(s) 94, 1421, 6965
Ama87I CYCGRG 1 cut(s) 707
Aor13HI TCCGGA 1 cut(s) 5331
ApaI GGGCCC 1 cut(s) 1176
AseI ATTAAT 1 cut(s) 4476
Asp700I GAANNNNTTC 5 cut(s) 2177, 3569, 4461, 6079, 6390
AspS9I GGNCC 7 cut(s) 866, 1172, 1173, 1583, 2251, 2487, 3032
AsuC2I CCSGG 2 cut(s) 648, 2061
AsuII TTCGAA 1 cut(s) 7523
AvaI CYCGRG 1 cut(s) 707
AvaII GGWCC 2 cut(s) 866, 1583
AxyI CCTNAGG 1 cut(s) 2247
BaeGI GKGCMC 2 cut(s) 1176, 6880
BalI TGGCCA 2 cut(s) 2931, 3479
BamHI GGATCC 2 cut(s) 7120, 7447
BanI GGYRCC 1 cut(s) 2989
BanII GRGCYC 5 cut(s) 1176, 1766, 1829, 3051, 4154
BarI GAAGNNNNNNTAC 4 cut(s) 5394, 5426, 7603, 7635
BauI CACGAG 1 cut(s) 2457
BbrPI CACGTG 1 cut(s) 5105
BbsI GAAGAC 8 cut(s) 18, 2073, 2336, 3384, 4478, 5415, 5996, 7304
Bbv12I GWGCWC 2 cut(s) 221, 4154
BceAI ACGGC 2 cut(s) 686, 4306
BciT130I CCWGG 3 cut(s) 1869, 2096, 7417
BciVI GTATCC 3 cut(s) 756, 1236, 6255
BclI TGATCA 1 cut(s) 2908
BcnI CCSGG 2 cut(s) 648, 2061
BcuI ACTAGT 1 cut(s) 4202
BfmI CTRYAG 9 cut(s) 530, 873, 1705, 1820, 2163, 2273, 6102, 6843, 6951
BfoI RGCGCY 4 cut(s) 442, 455, 647, 2013
BfrI CTTAAG 2 cut(s) 995, 4765
BfuAI ACCTGC 2 cut(s) 3075, 7331
BfuI GTATCC 3 cut(s) 756, 1236, 6255
BglII AGATCT 4 cut(s) 1480, 1636, 5755, 7227
BlpI GCTNAGC 1 cut(s) 2568
BmcAI AGTACT 2 cut(s) 2005, 3494
Bme1390I CCNGG 5 cut(s) 648, 1869, 2061, 2096, 7417
Bme18I GGWCC 2 cut(s) 866, 1583
BmeT110I CYCGRG 1 cut(s) 707
BmgBI CACGTC 1 cut(s) 7117
BmgT120I GGNCC 7 cut(s) 866, 1172, 1173, 1583, 2251, 2487, 3032
BmiI GGNNCC 8 cut(s) 786, 1174, 1175, 2253, 2991, 7122, 7330, 7449
BmrFI CCNGG 5 cut(s) 648, 1869, 2061, 2096, 7417
BmrI ACTGGG 2 cut(s) 2799, 4627
BmuI ACTGGG 2 cut(s) 2799, 4627
BpiI GAAGAC 8 cut(s) 18, 2073, 2336, 3384, 4478, 5415, 5996, 7304
BplI GAGNNNNNCTC 6 cut(s) 1042, 1074, 3194, 3226, 6865, 6897
Bpu10I CCTNAGC 1 cut(s) 1790
Bpu1102I GCTNAGC 1 cut(s) 2568
Bpu14I TTCGAA 1 cut(s) 7523
BpuEI CTTGAG 6 cut(s) 1298, 1361, 1664, 2621, 6353, 6632
BpuMI CCSGG 2 cut(s) 648, 2061
Bsa29I ATCGAT 2 cut(s) 3027, 5493
BsaAI YACGTR 1 cut(s) 5105
BsaBI GATNNNNATC 1 cut(s) 3105
BsaHI GRCGYC 1 cut(s) 497
BsaI GGTCTC 5 cut(s) 1045, 1347, 1869, 4385, 4696
BsaJI CCNNGG 9 cut(s) 647, 1333, 1868, 2095, 3465, 6231, 6381, 6467, 7439
BsaWI WCCGGW 2 cut(s) 699, 5331
BsaXI ACNNNNNCTCC 4 cut(s) 2623, 2653, 6617, 6647
Bse21I CCTNAGG 1 cut(s) 2247
Bse3DI GCAATG 7 cut(s) 749, 3345, 3517, 3967, 4856, 5972, 7296
Bse8I GATNNNNATC 1 cut(s) 3105
BseAI TCCGGA 1 cut(s) 5331
BseBI CCWGG 3 cut(s) 1869, 2096, 7417
BseCI ATCGAT 2 cut(s) 3027, 5493
BseDI CCNNGG 9 cut(s) 647, 1333, 1868, 2095, 3465, 6231, 6381, 6467, 7439
BseJI GATNNNNATC 1 cut(s) 3105
BseMI GCAATG 7 cut(s) 749, 3345, 3517, 3967, 4856, 5972, 7296
BseRI GAGGAG 4 cut(s) 737, 3410, 4619, 4798
BseSI GKGCMC 2 cut(s) 1176, 6880
BseYI CCCAGC 1 cut(s) 1177
BsgI GTGCAG 6 cut(s) 428, 1086, 1223, 1659, 7287, 7359
Bsh1236I CGCG 1 cut(s) 376
Bsh1285I CGRYCG 1 cut(s) 593
BshNI GGYRCC 1 cut(s) 2989
BshVI ATCGAT 2 cut(s) 3027, 5493
BsiEI CGRYCG 1 cut(s) 593
BsiHKAI GWGCWC 2 cut(s) 221, 4154
BsiHKCI CYCGRG 1 cut(s) 707
BsiSI CCGG 6 cut(s) 247, 647, 700, 2060, 3190, 5332
BslFI GGGAC 3 cut(s) 2088, 2483, 5209
BsmBI CGTCTC 2 cut(s) 30, 6639
BsmFI GGGAC 3 cut(s) 2088, 2483, 5209
BsmI GAATGC 3 cut(s) 4537, 5220, 5279
Bso31I GGTCTC 5 cut(s) 1045, 1347, 1869, 4385, 4696
BsoBI CYCGRG 1 cut(s) 707
Bsp119I TTCGAA 1 cut(s) 7523
Bsp120I GGGCCC 1 cut(s) 1172
Bsp1286I GDGCHC 7 cut(s) 221, 1176, 1766, 1829, 3051, 4154, 6880
Bsp13I TCCGGA 1 cut(s) 5331
Bsp1407I TGTACA 3 cut(s) 1905, 2684, 6642
Bsp1720I GCTNAGC 1 cut(s) 2568
Bsp19I CCATGG 2 cut(s) 6467, 7439
BspDI ATCGAT 2 cut(s) 3027, 5493
BspEI TCCGGA 1 cut(s) 5331
BspFNI CGCG 1 cut(s) 376
BspHI TCATGA 5 cut(s) 1212, 3295, 4408, 4420, 6870
BspLI GGNNCC 8 cut(s) 786, 1174, 1175, 2253, 2991, 7122, 7330, 7449
BspMAI CTGCAG 4 cut(s) 534, 877, 2277, 6106
BspMI ACCTGC 2 cut(s) 3075, 7331
BspQI GCTCTTC 1 cut(s) 136
BspT104I TTCGAA 1 cut(s) 7523
BspT107I GGYRCC 1 cut(s) 2989
BspTI CTTAAG 2 cut(s) 995, 4765
BspTNI GGTCTC 5 cut(s) 1045, 1347, 1869, 4385, 4696
BsrDI GCAATG 7 cut(s) 749, 3345, 3517, 3967, 4856, 5972, 7296
BsrGI TGTACA 3 cut(s) 1905, 2684, 6642
BssECI CCNNGG 9 cut(s) 647, 1333, 1868, 2095, 3465, 6231, 6381, 6467, 7439
BssNAI GTATAC 2 cut(s) 3997, 6056
BssNI GRCGYC 1 cut(s) 497
BssSI CACGAG 1 cut(s) 2457
BssT1I CCWWGG 5 cut(s) 1333, 3465, 6381, 6467, 7439
Bst1107I GTATAC 2 cut(s) 3997, 6056
Bst2BI CACGAG 1 cut(s) 2457
Bst2UI CCWGG 3 cut(s) 1869, 2096, 7417
Bst6I CTCTTC 8 cut(s) 136, 416, 1074, 3168, 6085, 6164, 6486, 7218
BstACI GRCGYC 1 cut(s) 497
BstAFI CTTAAG 2 cut(s) 995, 4765
BstAPI GCANNNNNTGC 1 cut(s) 6965
BstAUI TGTACA 3 cut(s) 1905, 2684, 6642
BstBAI YACGTR 1 cut(s) 5105
BstBI TTCGAA 1 cut(s) 7523
BstC8I GCNNGC 4 cut(s) 1172, 1409, 2574, 3974
BstDSI CCRYGG 2 cut(s) 6467, 7439
BstEII GGTNACC 2 cut(s) 2441, 3392
BstENI CCTNNNNNAGG 1 cut(s) 5345
BstFNI CGCG 1 cut(s) 376
BstH2I RGCGCY 4 cut(s) 442, 455, 647, 2013
BstMCI CGRYCG 1 cut(s) 593
BstNI CCWGG 3 cut(s) 1869, 2096, 7417
BstNSI RCATGY 5 cut(s) 1364, 3680, 5510, 5997, 6311
BstPI GGTNACC 2 cut(s) 2441, 3392
BstSCI CCNGG 5 cut(s) 646, 1867, 2059, 2094, 7415
BstSFI CTRYAG 9 cut(s) 530, 873, 1705, 1820, 2163, 2273, 6102, 6843, 6951
BstSLI GKGCMC 2 cut(s) 1176, 6880
BstUI CGCG 1 cut(s) 376
BstV2I GAAGAC 8 cut(s) 18, 2073, 2336, 3384, 4478, 5415, 5996, 7304
BstXI CCANNNNNNTGG 3 cut(s) 334, 1756, 7117
BstZ17I GTATAC 2 cut(s) 3997, 6056
Bsu15I ATCGAT 2 cut(s) 3027, 5493
Bsu36I CCTNAGG 1 cut(s) 2247
BsuI GTATCC 3 cut(s) 756, 1236, 6255
BsuTUI ATCGAT 2 cut(s) 3027, 5493
BtgI CCRYGG 2 cut(s) 6467, 7439
BtrI CACGTC 1 cut(s) 7117
BtsI GCAGTG 2 cut(s) 4090, 6813
BveI ACCTGC 2 cut(s) 3075, 7331
Cac8I GCNNGC 4 cut(s) 1172, 1409, 2574, 3974
CaiI CAGNNNCTG 3 cut(s) 94, 1421, 6965
CciI TCATGA 5 cut(s) 1212, 3295, 4408, 4420, 6870
Cfr13I GGNCC 7 cut(s) 866, 1172, 1173, 1583, 2251, 2487, 3032
ClaI ATCGAT 2 cut(s) 3027, 5493
CseI GACGC 4 cut(s) 486, 682, 1694, 3422
CspCI CAANNNNNGTGG 4 cut(s) 5034, 5069, 7171, 7206
DraI TTTAAA 3 cut(s) 966, 1344, 1431
DrdI GACNNNNNNGTC 1 cut(s) 589
DseDI GACNNNNNNGTC 1 cut(s) 589
EaeI YGGCCR 2 cut(s) 2929, 3477
Eam1104I CTCTTC 8 cut(s) 136, 416, 1074, 3168, 6085, 6164, 6486, 7218
EarI CTCTTC 8 cut(s) 136, 416, 1074, 3168, 6085, 6164, 6486, 7218
EciI GGCGGA 1 cut(s) 950
Ecl136II GAGCTC 1 cut(s) 4152
Eco130I CCWWGG 5 cut(s) 1333, 3465, 6381, 6467, 7439
Eco147I AGGCCT 2 cut(s) 5209, 7002
Eco24I GRGCYC 5 cut(s) 1176, 1766, 1829, 3051, 4154
Eco31I GGTCTC 5 cut(s) 1045, 1347, 1869, 4385, 4696
Eco32I GATATC 3 cut(s) 1558, 2340, 3927
Eco47I GGWCC 2 cut(s) 866, 1583
Eco53kI GAGCTC 1 cut(s) 4152
Eco72I CACGTG 1 cut(s) 5105
Eco81I CCTNAGG 1 cut(s) 2247
Eco88I CYCGRG 1 cut(s) 707
Eco91I GGTNACC 2 cut(s) 2441, 3392
EcoICRI GAGCTC 1 cut(s) 4152
EcoNI CCTNNNNNAGG 1 cut(s) 5345
EcoO109I RGGNCCY 3 cut(s) 1173, 2251, 2487
EcoO65I GGTNACC 2 cut(s) 2441, 3392
EcoRI GAATTC 6 cut(s) 1385, 3276, 4294, 6322, 6702, 7039
EcoRII CCWGG 3 cut(s) 1867, 2094, 7415
EcoRV GATATC 3 cut(s) 1558, 2340, 3927
EcoT14I CCWWGG 5 cut(s) 1333, 3465, 6381, 6467, 7439
EcoT22I ATGCAT 5 cut(s) 3043, 4161, 4856, 4965, 5847
EcoT38I GRGCYC 5 cut(s) 1176, 1766, 1829, 3051, 4154
ErhI CCWWGG 5 cut(s) 1333, 3465, 6381, 6467, 7439
Esp3I CGTCTC 2 cut(s) 30, 6639
FaqI GGGAC 3 cut(s) 2088, 2483, 5209
FauI CCCGC 2 cut(s) 253, 1163
FbaI TGATCA 1 cut(s) 2908
FblI GTMKAC 3 cut(s) 3996, 6055, 6816
FriOI GRGCYC 5 cut(s) 1176, 1766, 1829, 3051, 4154
FspAI RTGCGCAY 1 cut(s) 5477
FspI TGCGCA 1 cut(s) 5477
GsaI CCCAGC 1 cut(s) 1181
HaeII RGCGCY 4 cut(s) 442, 455, 647, 2013
HapII CCGG 6 cut(s) 247, 647, 700, 2060, 3190, 5332
HgaI GACGC 4 cut(s) 486, 682, 1694, 3422
Hin1I GRCGYC 1 cut(s) 497
HincII GTYRAC 4 cut(s) 2710, 5797, 6238, 6630
HindII GTYRAC 4 cut(s) 2710, 5797, 6238, 6630
HindIII AAGCTT 5 cut(s) 992, 1405, 6026, 6914, 7094
HpaI GTTAAC 2 cut(s) 6238, 6630
HpaII CCGG 6 cut(s) 247, 647, 700, 2060, 3190, 5332
Hpy99I CGWCG 1 cut(s) 6785
HpyCH4IV ACGT 8 cut(s) 1289, 3154, 3408, 5104, 5982, 6632, 7116, 7390
HpySE526I ACGT 8 cut(s) 1289, 3154, 3408, 5104, 5982, 6632, 7116, 7390
Hsp92I GRCGYC 1 cut(s) 497
Kpn2I TCCGGA 1 cut(s) 5331
Ksp22I TGATCA 1 cut(s) 2908
KspAI GTTAAC 2 cut(s) 6238, 6630
LguI GCTCTTC 1 cut(s) 136
LmnI GCTCC 7 cut(s) 641, 2918, 4606, 5067, 5503, 5578, 7334
MaeII ACGT 8 cut(s) 1289, 3154, 3408, 5104, 5982, 6632, 7116, 7390
MfeI CAATTG 2 cut(s) 833, 5481
MhlI GDGCHC 7 cut(s) 221, 1176, 1766, 1829, 3051, 4154, 6880
MlsI TGGCCA 2 cut(s) 2931, 3479
MluNI TGGCCA 2 cut(s) 2931, 3479
MlyI GAGTC 8 cut(s) 310, 1429, 1544, 1885, 2471, 5363, 6386, 6956
MmeI TCCRAC 7 cut(s) 342, 378, 619, 2741, 3111, 5292, 7437
Mox20I TGGCCA 2 cut(s) 2931, 3479
Mph1103I ATGCAT 5 cut(s) 3043, 4161, 4856, 4965, 5847
MroI TCCGGA 1 cut(s) 5331
MroXI GAANNNNTTC 5 cut(s) 2177, 3569, 4461, 6079, 6390
MscI TGGCCA 2 cut(s) 2931, 3479
MslI CAYNNNNRTG 7 cut(s) 214, 309, 1117, 4218, 4835, 7356, 7497
Msp20I TGGCCA 2 cut(s) 2931, 3479
MspA1I CMGCKG 1 cut(s) 4748
MspCI CTTAAG 2 cut(s) 995, 4765
MspI CCGG 6 cut(s) 247, 647, 700, 2060, 3190, 5332
MspR9I CCNGG 5 cut(s) 648, 1869, 2061, 2096, 7417
MunI CAATTG 2 cut(s) 833, 5481
Mva1269I GAATGC 3 cut(s) 4537, 5220, 5279
MvaI CCWGG 3 cut(s) 1869, 2096, 7417
MvnI CGCG 1 cut(s) 376
NciI CCSGG 2 cut(s) 648, 2061
NcoI CCATGG 2 cut(s) 6467, 7439
NlaIV GGNNCC 8 cut(s) 786, 1174, 1175, 2253, 2991, 7122, 7330, 7449
NmeAIII GCCGAG 1 cut(s) 72
NmuCI GTSAC 6 cut(s) 2241, 2441, 3958, 6664, 7112, 7462
NsbI TGCGCA 1 cut(s) 5477
NsiI ATGCAT 5 cut(s) 3043, 4161, 4856, 4965, 5847
NspI RCATGY 5 cut(s) 1364, 3680, 5510, 5997, 6311
NspV TTCGAA 1 cut(s) 7523
OliI CACNNNNGTG 1 cut(s) 214
PaeR7I CTCGAG 1 cut(s) 707
PagI TCATGA 5 cut(s) 1212, 3295, 4408, 4420, 6870
PceI AGGCCT 2 cut(s) 5209, 7002
PciI ACATGT 3 cut(s) 1360, 5993, 6307
PciSI GCTCTTC 1 cut(s) 136
PcsI WCGNNNNNNNCGW 3 cut(s) 494, 590, 611
PctI GAATGC 3 cut(s) 4537, 5220, 5279
PdmI GAANNNNTTC 5 cut(s) 2177, 3569, 4461, 6079, 6390
PflMI CCANNNNNTGG 3 cut(s) 397, 923, 2820
PleI GAGTC 8 cut(s) 309, 1429, 1544, 1885, 2470, 5363, 6385, 6956
PmaCI CACGTG 1 cut(s) 5105
PmlI CACGTG 1 cut(s) 5105
PpsI GAGTC 8 cut(s) 309, 1429, 1544, 1885, 2470, 5363, 6385, 6956
Ppu21I YACGTR 1 cut(s) 5105
PscI ACATGT 3 cut(s) 1360, 5993, 6307
PshBI ATTAAT 1 cut(s) 4476
PsiI TTATAA 1 cut(s) 2198
Psp124BI GAGCTC 1 cut(s) 4154
Psp1406I AACGTT 1 cut(s) 1289
Psp6I CCWGG 3 cut(s) 1867, 2094, 7415
PspCI CACGTG 1 cut(s) 5105
PspEI GGTNACC 2 cut(s) 2441, 3392
PspFI CCCAGC 1 cut(s) 1177
PspGI CCWGG 3 cut(s) 1867, 2094, 7415
PspN4I GGNNCC 8 cut(s) 786, 1174, 1175, 2253, 2991, 7122, 7330, 7449
PspOMI GGGCCC 1 cut(s) 1172
PspPI GGNCC 7 cut(s) 866, 1172, 1173, 1583, 2251, 2487, 3032
PstI CTGCAG 4 cut(s) 534, 877, 2277, 6106
PstNI CAGNNNCTG 3 cut(s) 94, 1421, 6965
PvuII CAGCTG 1 cut(s) 4748
RseI CAYNNNNRTG 7 cut(s) 214, 309, 1117, 4218, 4835, 7356, 7497
SacI GAGCTC 1 cut(s) 4154
SapI GCTCTTC 1 cut(s) 136
Sau96I GGNCC 7 cut(s) 866, 1172, 1173, 1583, 2251, 2487, 3032
ScaI AGTACT 2 cut(s) 2005, 3494
SchI GAGTC 8 cut(s) 310, 1429, 1544, 1885, 2471, 5363, 6386, 6956
ScrFI CCNGG 5 cut(s) 648, 1869, 2061, 2096, 7417
SduI GDGCHC 7 cut(s) 221, 1176, 1766, 1829, 3051, 4154, 6880
SfcI CTRYAG 9 cut(s) 530, 873, 1705, 1820, 2163, 2273, 6102, 6843, 6951
Sfr274I CTCGAG 1 cut(s) 707
SfuI TTCGAA 1 cut(s) 7523
SinI GGWCC 2 cut(s) 866, 1583
SlaI CTCGAG 1 cut(s) 707
SmiMI CAYNNNNRTG 7 cut(s) 214, 309, 1117, 4218, 4835, 7356, 7497
SmlI CTYRAG 9 cut(s) 707, 995, 1313, 1376, 1679, 2600, 4765, 6332, 6611
SmoI CTYRAG 9 cut(s) 707, 995, 1313, 1376, 1679, 2600, 4765, 6332, 6611
SpeI ACTAGT 1 cut(s) 4202
SseBI AGGCCT 2 cut(s) 5209, 7002
SspI AATATT 3 cut(s) 844, 2703, 3889
SstI GAGCTC 1 cut(s) 4154
StuI AGGCCT 2 cut(s) 5209, 7002
StyD4I CCNGG 5 cut(s) 646, 1867, 2059, 2094, 7415
StyI CCWWGG 5 cut(s) 1333, 3465, 6381, 6467, 7439
TaiI ACGT 8 cut(s) 1292, 3157, 3411, 5107, 5985, 6635, 7119, 7393
TatI WGTACW 8 cut(s) 1905, 2003, 2684, 3492, 3535, 4022, 4981, 6642
TauI GCSGC 5 cut(s) 236, 452, 973, 3127, 5717
TseFI GTSAC 6 cut(s) 2241, 2441, 3958, 6664, 7112, 7462
Tsp45I GTSAC 6 cut(s) 2241, 2441, 3958, 6664, 7112, 7462
TspGWI ACGGA 6 cut(s) 1019, 1547, 1587, 2034, 5054, 6032
Van91I CCANNNNNTGG 3 cut(s) 397, 923, 2820
Vha464I CTTAAG 2 cut(s) 995, 4765
VpaK11BI GGWCC 2 cut(s) 866, 1583
VspI ATTAAT 1 cut(s) 4476
XagI CCTNNNNNAGG 1 cut(s) 5345
XbaI TCTAGA 2 cut(s) 4195, 4952
XceI RCATGY 5 cut(s) 1364, 3680, 5510, 5997, 6311
XhoI CTCGAG 1 cut(s) 707
XmiI GTMKAC 3 cut(s) 3996, 6055, 6816
XmnI GAANNNNTTC 5 cut(s) 2177, 3569, 4461, 6079, 6390
ZrmI AGTACT 2 cut(s) 2005, 3494
Zsp2I ATGCAT 5 cut(s) 3043, 4161, 4856, 4965, 5847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.