Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000533.1

Orthogroup ID

OG0002923

Physical Location & Seq

Genomic Coordinates Forward (+)

351 .. 4942

Gene Structure 4592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000533.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2832 bp

atgcttttgggcttcagccctaatcctttgggcttttcggcccaacacttaaacccttggtatgcttactctctaccgcccgtcttaaaccctaaaatcaccaaaacctcactgactgtttttgcaatggaagaaggaagctcagcctgggaggatcaagttatggtggaggaagcctatgacagtgaggttatgggagaagaattgccgaaagttgagcttaaggagaatcatgaagcgaaagttaaagaactattgcataagattacttctaatgagattaaattatgcgctgccggtgcgaaagagtttataaagttgctgaaaggtgattccggaggtgaattgctgtattactatgtgcaaaattcagctcagtgctcggagcttctgggtgcgtggaatctccggcgagggaagccggggatgttttatatactgaagttgatttctgttgttttgagtcatcctgatggggtttatgaagcaaatgatatggggaggttgggggtgagtagggtgttggacaagtttgcgcggtcgattattgagcaacagttgggagatgtgcataaggagttgaagagcagtgaagctaagcgccagatggcggcgcttttgcttttggcttcgattgtgaggcgtggatcggttttggcgtctgaggtggaaaagaagtttgatttcaagctgcaggggttttgcaagttgggggagtataaaatgaggccaaatgggaagaggaggaagctgtcattgaggaagttgtttgttgggtttgcaatgtcgtttctggaggtgggagcgccgggattgttgaggtcggttatacggcagaaggaaatgtattcttgtgtcctccgctggctggggaatgatgatgaggagacagttatatatgttctgtccacattgcagaacaggatacttgttgagggttcatcggttccccctgcccttcggagtgttctgtttgggagtggtactttagaacaattggccaatatttctggaagggagagtggtggagcttctgcagaattggcatacagggtcttagttatggtttgcaccgatccatctaatggcctaatggcagattcaaagagacacctgaagggcaatttaaagcggcaaatagacctaatgaagaagcttaaggcgaccgagattggctaccacagggatctgcttttggctgttgttagtgggagaccgtctcttggtgcagcatacatggaagagttcccttacaatcttgaagattatgcatcacccaaatggttttatgttgttactctagcagcaaacttggtttcctctgtgggcagtggcatcccagccttgtttgacaatgttcatgtgcaggatgtcatgaaatgcttgtatcctcgtcagttcaaccgctccgcgatcaataaagggctgcttcactctgattttctagtgaagcatggaactttaaggcatcttttagaggcactcaagttgttagattccttccttggtgttttaaactgtagagaccaacatgtttcggaatctctcaagcaagaatttcaaaatgaagttcgaagcttgctcccagatcctcaactttttaagagtctactctcttctatgagtagcaactcaagaaagaggacagcagatctggagaagttcccagaacatagcccgaagaatgtgaaaaaattgaaaacagattttggaaacaaggactcagatattgttgtaggcggaataagttttggtccagatacgtccgaaaatgaagatagtcttgtgaatgttatggcagatctttggggtttcgatccttgctccacacctattgctgcactcaaggatgcagacttatatttctactgtagggtgctcgatgctttcaaaatatatcttcggataatgcccactggcttggagggctcatttgagttccttatgaagctcctaagcagtcctttagcattacaaaataatctgcagtgctctcttttgtctttgctaatagaatacattggatggtctccaaggaatagaacaccaattaagactccacccttgatgtacaaacatctacagacattgatgaagttgctgattttttcaccactcagtgacataaaagatcaagcatactgtctcacacaagcagctatgttaagtactggtgcttttgacaaaaaccaacatgaaattgcatcatggttcttgtttataccgggttttgatagaggaaaatcttcggttgaagtcctgggggtgggagtattacaaagcttggctaatgctgtcatctcattcttatctgatgccgtttctactacagggaagaatttcttcaagcattgggatcttattgttaagcgtgataactaccatttggaaactgttaaagatgtgtcacctcaggcccctctaatcttacgggtactgcagaattgtctgagattgcttgattctggatctgggacttttacattacctgagaagacaatgatatctacctatgtgtgcaatacactgaaatatatcttgaaaactcaggttgatgcacggtttctatcttctatgatttgctcactcttggttgagagacttggtgactgttctgccactcatcagtctaggggcaactgtgaatggaggccgttgaacagtttatttttgttttcccagagtatatctgaccgtgaaatttgttgcatttcttctattgacaataaggctaagccttctggtagttcttttgcactagcgcttgaggaagttggaagacttgcaagaggtgggagtgatggtgaagtagctggaataaccaaagcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NopRA1 Npa1

Protein Analysis

943

Amino Acids

104.92

Weight (kDa)

8.5

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72270 AT4G27010 AT4G27010
fragaria_vesca	FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520
malus_domestica	MD03G1202300.v1.1
prunus_persica	Prupe.4G211600_v2.0.a1 Prupe.4G211600_v2.0.a1 Prupe.4G211600_v2.0.a1
pyrus_communis	pycom03g15370 pycom03g15380 pycom03g15390
rosa_chinensis	RchiOBHm_Chr5g0039261
rosa_laevigata	RLG00000033900 RLG00000033902
rosa_multiflora	Rmu_sc0000533.1_g000002 Rmu_sc0000533.1_g000003 Rmu_ssc0000410.1_g000046
rosa_roxburghii	Rroxscaffold_1G00040450 Rroxscaffold_1G00041880
rosa_rugosa	Rorug05G0177300
rosa_samantha	Rh5AG264000 Rh5BG268900 Rh5CG301900 Rh5DG276600
rosa_wichuraiana	Rw5G024750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	314
AccB7I	CCANNNNNTGG	1 cut(s)	1085
AccBSI	CCGCTC	1 cut(s)	1407
AccI	GTMKAC	1 cut(s)	1609
AccII	CGCG	2 cut(s)	538, 1412
AccIII	TCCGGA	1 cut(s)	335
AciI	CCGC	8 cut(s)	77, 538, 611, 862, 1132, 1405, 1410, 1740
AclWI	GGATC	8 cut(s)	162, 655, 1070, 1194, 1583, 1811, 2364, 2476
AcoI	YGGCCR	1 cut(s)	999
AcsI	RAATTY	4 cut(s)	367, 1556, 2338, 2700
AcuI	CTGAAG	2 cut(s)	461, 1136
AcyI	GRCGYC	1 cut(s)	659
AdeI	CACNNNGTG	1 cut(s)	2120
AfaI	GTAC	4 cut(s)	985, 2072, 2170, 2436
AfeI	AGCGCT	1 cut(s)	2763
AfiI	CCNNNNNNNGG	5 cut(s)	610, 868, 1085, 1223, 2266
AflII	CTTAAG	2 cut(s)	221, 1157
AflIII	ACRYGT	1 cut(s)	1531
AjnI	CCWGG	2 cut(s)	146, 2259
Alw21I	GWGCWC	3 cut(s)	383, 1881, 1994
Alw26I	GTCTC	8 cut(s)	881, 1102, 1207, 1224, 1518, 2034, 2150, 2593
AlwI	GGATC	8 cut(s)	162, 655, 1070, 1194, 1583, 1811, 2364, 2476
Aor13HI	TCCGGA	1 cut(s)	335
Aor51HI	AGCGCT	1 cut(s)	2763
AoxI	GGCC	6 cut(s)	39, 728, 999, 1087, 2415, 2651
ApeKI	GCWGC	7 cut(s)	293, 691, 1229, 1304, 1426, 1838, 2156
ApoI	RAATTY	4 cut(s)	367, 1556, 2338, 2700
Asp700I	GAANNNNTTC	3 cut(s)	2245, 2339, 2342
AspLEI	GCGC	6 cut(s)	293, 538, 603, 616, 808, 2764
AspS9I	GGNCC	3 cut(s)	40, 1754, 2416
AsuC2I	CCSGG	3 cut(s)	423, 810, 2226
AsuHPI	GGTGA	9 cut(s)	91, 341, 353, 523, 1266, 2103, 2400, 2618, 2816
AsuII	TTCGAA	1 cut(s)	1573
AvaII	GGWCC	1 cut(s)	1754
AxyI	CCTNAGG	1 cut(s)	2412
BalI	TGGCCA	1 cut(s)	1001
BanII	GRGCYC	1 cut(s)	1931
BbsI	GAAGAC	2 cut(s)	2501, 2785
Bbv12I	GWGCWC	3 cut(s)	383, 1881, 1994
BbvI	GCAGC	7 cut(s)	280, 678, 1241, 1316, 1413, 1825, 2168
BccI	CCATC	5 cut(s)	467, 601, 1087, 2019, 2795
BceAI	ACGGC	3 cut(s)	848, 2303, 2638
BciT130I	CCWGG	2 cut(s)	148, 2261
BciVI	GTATCC	2 cut(s)	918, 1398
BcnI	CCSGG	3 cut(s)	423, 810, 2226
BcoDI	GTCTC	8 cut(s)	881, 1102, 1207, 1224, 1518, 2034, 2150, 2593
BfaI	CTAG	5 cut(s)	1301, 1445, 2631, 2759, 2830
BfmI	CTRYAG	8 cut(s)	692, 1035, 1519, 1870, 1985, 2081, 2328, 2438
BfoI	RGCGCY	4 cut(s)	604, 617, 809, 2765
BfrI	CTTAAG	2 cut(s)	221, 1157
BfuI	GTATCC	2 cut(s)	918, 1398
BglII	AGATCT	2 cut(s)	1651, 1801
BisI	GCNGC	9 cut(s)	294, 612, 692, 1133, 1230, 1305, 1427, 1839, 2157
BlpI	GCTNAGC	3 cut(s)	142, 597, 2733
BlsI	GCNGC	9 cut(s)	295, 613, 693, 1134, 1231, 1306, 1428, 1840, 2158
BmcAI	AGTACT	1 cut(s)	2170
Bme1390I	CCNGG	5 cut(s)	148, 423, 810, 2226, 2261
Bme18I	GGWCC	1 cut(s)	1754
BmgT120I	GGNCC	3 cut(s)	40, 1754, 2416
BmiI	GGNNCC	2 cut(s)	948, 2418
BmrFI	CCNGG	5 cut(s)	148, 423, 810, 2226, 2261
BmsI	GCATC	8 cut(s)	1280, 1344, 1477, 1840, 1873, 2213, 2305, 2545
BpiI	GAAGAC	2 cut(s)	2501, 2785
BplI	GAGNNNNNCTC	2 cut(s)	1204, 1236
BpmI	CTGGAG	2 cut(s)	815, 1676
Bpu10I	CCTNAGC	1 cut(s)	1955
Bpu1102I	GCTNAGC	3 cut(s)	142, 597, 2733
Bpu14I	TTCGAA	1 cut(s)	1573
BpuEI	CTTGAG	5 cut(s)	1469, 1532, 1618, 1829, 2786
BpuMI	CCSGG	3 cut(s)	423, 810, 2226
BsaHI	GRCGYC	1 cut(s)	659
BsaI	GGTCTC	3 cut(s)	1207, 1518, 2034
BsaJI	CCNNGG	6 cut(s)	56, 147, 422, 1504, 2033, 2260
BsaWI	WCCGGW	1 cut(s)	335
BsaXI	ACNNNNNCTCC	2 cut(s)	2788, 2818
Bsc4I	CCNNNNNNNGG	5 cut(s)	610, 868, 1085, 1223, 2266
Bse118I	RCCGGY	1 cut(s)	296
Bse1I	ACTGG	2 cut(s)	1921, 2176
Bse21I	CCTNAGG	1 cut(s)	2412
Bse3DI	GCAATG	3 cut(s)	132, 789, 911
BseAI	TCCGGA	1 cut(s)	335
BseBI	CCWGG	2 cut(s)	148, 2261
BseDI	CCNNGG	6 cut(s)	56, 147, 422, 1504, 2033, 2260
BseGI	GGATG	6 cut(s)	432, 466, 1335, 1375, 1855, 2030
BseLI	CCNNNNNNNGG	5 cut(s)	610, 868, 1085, 1223, 2266
BseMI	GCAATG	3 cut(s)	132, 789, 911
BseMII	CTCAG	9 cut(s)	156, 389, 654, 1737, 2131, 2426, 2441, 2481, 2561
BseNI	ACTGG	2 cut(s)	1921, 2176
BseRI	GAGGAG	2 cut(s)	757, 899
BseXI	GCAGC	7 cut(s)	280, 678, 1241, 1316, 1413, 1825, 2168
BseYI	CCCAGC	2 cut(s)	868, 1339
BsgI	GTGCAG	3 cut(s)	1248, 1385, 1824
Bsh1236I	CGCG	2 cut(s)	538, 1412
Bsh1285I	CGRYCG	2 cut(s)	542, 1167
BshFI	GGCC	6 cut(s)	41, 730, 1001, 1089, 2417, 2653
BsiEI	CGRYCG	2 cut(s)	542, 1167
BsiHKAI	GWGCWC	3 cut(s)	383, 1881, 1994
BsiSI	CCGG	6 cut(s)	297, 336, 409, 422, 809, 2225
BslFI	GGGAC	1 cut(s)	2488
BslI	CCNNNNNNNGG	5 cut(s)	610, 868, 1085, 1223, 2266
BsmAI	GTCTC	8 cut(s)	881, 1102, 1207, 1224, 1518, 2034, 2150, 2593
BsmBI	CGTCTC	1 cut(s)	1224
BsmFI	GGGAC	1 cut(s)	2488
BsnI	GGCC	6 cut(s)	41, 730, 1001, 1089, 2417, 2653
Bso31I	GGTCTC	3 cut(s)	1207, 1518, 2034
Bsp119I	TTCGAA	1 cut(s)	1573
Bsp1286I	GDGCHC	4 cut(s)	383, 1881, 1931, 1994
Bsp13I	TCCGGA	1 cut(s)	335
Bsp1407I	TGTACA	1 cut(s)	2070
Bsp1720I	GCTNAGC	3 cut(s)	142, 597, 2733
BspACI	CCGC	8 cut(s)	77, 538, 611, 862, 1132, 1405, 1410, 1740
BspANI	GGCC	6 cut(s)	41, 730, 1001, 1089, 2417, 2653
BspCNI	CTCAG	9 cut(s)	155, 388, 655, 1736, 2130, 2425, 2442, 2482, 2560
BspEI	TCCGGA	1 cut(s)	335
BspFNI	CGCG	2 cut(s)	538, 1412
BspHI	TCATGA	2 cut(s)	232, 1374
BspLI	GGNNCC	2 cut(s)	948, 2418
BspMAI	CTGCAG	4 cut(s)	696, 1039, 1989, 2442
BspPI	GGATC	8 cut(s)	162, 655, 1070, 1194, 1583, 1811, 2364, 2476
BspQI	GCTCTTC	1 cut(s)	578
BspT104I	TTCGAA	1 cut(s)	1573
BspTI	CTTAAG	2 cut(s)	221, 1157
BspTNI	GGTCTC	3 cut(s)	1207, 1518, 2034
BsrBI	CCGCTC	1 cut(s)	1407
BsrDI	GCAATG	3 cut(s)	132, 789, 911
BsrFI	RCCGGY	1 cut(s)	296
BsrGI	TGTACA	1 cut(s)	2070
BsrI	ACTGG	2 cut(s)	1921, 2176
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	6 cut(s)	56, 147, 422, 1504, 2033, 2260
BssNI	GRCGYC	1 cut(s)	659
BssT1I	CCWWGG	3 cut(s)	56, 1504, 2033
Bst2UI	CCWGG	2 cut(s)	148, 2261
Bst6I	CTCTTC	4 cut(s)	578, 734, 1236, 1621
BstACI	GRCGYC	1 cut(s)	659
BstAFI	CTTAAG	2 cut(s)	221, 1157
BstAUI	TGTACA	1 cut(s)	2070
BstBI	TTCGAA	1 cut(s)	1573
BstC8I	GCNNGC	2 cut(s)	866, 1580
BstF5I	GGATG	6 cut(s)	432, 466, 1335, 1375, 1855, 2030
BstFNI	CGCG	2 cut(s)	538, 1412
BstH2I	RGCGCY	4 cut(s)	604, 617, 809, 2765
BstHHI	GCGC	6 cut(s)	293, 538, 603, 616, 808, 2764
BstMAI	GTCTC	8 cut(s)	881, 1102, 1207, 1224, 1518, 2034, 2150, 2593
BstMCI	CGRYCG	2 cut(s)	542, 1167
BstMWI	GCNNNNNNNGC	4 cut(s)	299, 418, 1043, 1926
BstNI	CCWGG	2 cut(s)	148, 2261
BstNSI	RCATGY	1 cut(s)	1535
BstSCI	CCNGG	5 cut(s)	146, 421, 808, 2224, 2259
BstSFI	CTRYAG	8 cut(s)	692, 1035, 1519, 1870, 1985, 2081, 2328, 2438
BstUI	CGCG	2 cut(s)	538, 1412
BstV1I	GCAGC	7 cut(s)	280, 678, 1241, 1316, 1413, 1825, 2168
BstV2I	GAAGAC	2 cut(s)	2501, 2785
BstX2I	RGATCY	6 cut(s)	1186, 1588, 1651, 1801, 2356, 2468
BstXI	CCANNNNNNTGG	1 cut(s)	1921
BstYI	RGATCY	6 cut(s)	1186, 1588, 1651, 1801, 2356, 2468
Bsu36I	CCTNAGG	1 cut(s)	2412
BsuI	GTATCC	2 cut(s)	918, 1398
BsuRI	GGCC	6 cut(s)	41, 730, 1001, 1089, 2417, 2653
BtsCI	GGATG	6 cut(s)	432, 466, 1335, 1375, 1855, 2030
BtsI	GCAGTG	3 cut(s)	595, 1336, 1994
BtsIMutI	CAGTG	9 cut(s)	110, 190, 383, 595, 1336, 1914, 1994, 2125, 2525
Cac8I	GCNNGC	2 cut(s)	866, 1580
CciI	TCATGA	2 cut(s)	232, 1374
CfoI	GCGC	6 cut(s)	293, 538, 603, 616, 808, 2764
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	3 cut(s)	40, 1754, 2416
CseI	GACGC	1 cut(s)	648
Csp6I	GTAC	4 cut(s)	984, 2071, 2169, 2435
CspCI	CAANNNNNGTGG	2 cut(s)	1816, 1851
CviAII	CATG	8 cut(s)	233, 1237, 1361, 1375, 1454, 1532, 2195, 2208
CviQI	GTAC	4 cut(s)	984, 2071, 2169, 2435
DraI	TTTAAA	2 cut(s)	1128, 1515
DraIII	CACNNNGTG	1 cut(s)	2120
EaeI	YGGCCR	1 cut(s)	999
Eam1104I	CTCTTC	4 cut(s)	578, 734, 1236, 1621
EarI	CTCTTC	4 cut(s)	578, 734, 1236, 1621
EciI	GGCGGA	1 cut(s)	1755
Eco130I	CCWWGG	3 cut(s)	56, 1504, 2033
Eco24I	GRGCYC	1 cut(s)	1931
Eco31I	GGTCTC	3 cut(s)	1207, 1518, 2034
Eco32I	GATATC	1 cut(s)	2505
Eco47I	GGWCC	1 cut(s)	1754
Eco47III	AGCGCT	1 cut(s)	2763
Eco57I	CTGAAG	2 cut(s)	461, 1136
Eco81I	CCTNAGG	1 cut(s)	2412
EcoO109I	RGGNCCY	1 cut(s)	2416
EcoRII	CCWGG	2 cut(s)	146, 2259
EcoRV	GATATC	1 cut(s)	2505
EcoT14I	CCWWGG	3 cut(s)	56, 1504, 2033
EcoT22I	ATGCAT	1 cut(s)	1273
EcoT38I	GRGCYC	1 cut(s)	1931
ErhI	CCWWGG	3 cut(s)	56, 1504, 2033
Esp3I	CGTCTC	1 cut(s)	1224
FaeI	CATG	8 cut(s)	236, 1240, 1364, 1378, 1457, 1535, 2198, 2211
FaqI	GGGAC	1 cut(s)	2488
FatI	CATG	8 cut(s)	232, 1236, 1360, 1374, 1453, 1531, 2194, 2207
FblI	GTMKAC	1 cut(s)	1609
Fnu4HI	GCNGC	9 cut(s)	294, 612, 692, 1133, 1230, 1305, 1427, 1839, 2157
FokI	GGATG	6 cut(s)	439, 453, 1322, 1382, 1862, 2037
FriOI	GRGCYC	1 cut(s)	1931
Fsp4HI	GCNGC	9 cut(s)	294, 612, 692, 1133, 1230, 1305, 1427, 1839, 2157
FspBI	CTAG	5 cut(s)	1301, 1445, 2631, 2759, 2830
GlaI	GCGC	6 cut(s)	292, 537, 602, 615, 807, 2763
GluI	GCNGC	9 cut(s)	294, 612, 692, 1133, 1230, 1305, 1427, 1839, 2157
GsaI	CCCAGC	2 cut(s)	872, 1343
GsuI	CTGGAG	2 cut(s)	815, 1676
HaeII	RGCGCY	4 cut(s)	604, 617, 809, 2765
HaeIII	GGCC	6 cut(s)	41, 730, 1001, 1089, 2417, 2653
HapII	CCGG	6 cut(s)	297, 336, 409, 422, 809, 2225
HgaI	GACGC	1 cut(s)	648
HhaI	GCGC	6 cut(s)	293, 538, 603, 616, 808, 2764
Hin1I	GRCGYC	1 cut(s)	659
Hin1II	CATG	8 cut(s)	236, 1240, 1364, 1378, 1457, 1535, 2198, 2211
Hin6I	GCGC	6 cut(s)	291, 536, 601, 614, 806, 2762
HinP1I	GCGC	6 cut(s)	291, 536, 601, 614, 806, 2762
HindIII	AAGCTT	3 cut(s)	1154, 1576, 2281
HpaII	CCGG	6 cut(s)	297, 336, 409, 422, 809, 2225
HphI	GGTGA	9 cut(s)	91, 341, 353, 523, 1266, 2103, 2400, 2618, 2816
Hpy166II	GTNNAC	2 cut(s)	909, 1610
Hpy8I	GTNNAC	2 cut(s)	909, 1610
HpyAV	CCTTC	7 cut(s)	128, 832, 968, 1008, 1111, 1510, 2748
HpyCH4IV	ACGT	1 cut(s)	1763
HpyF10VI	GCNNNNNNNGC	4 cut(s)	299, 418, 1043, 1926
HpySE526I	ACGT	1 cut(s)	1763
Hsp92I	GRCGYC	1 cut(s)	659
Hsp92II	CATG	8 cut(s)	236, 1240, 1364, 1378, 1457, 1535, 2198, 2211
HspAI	GCGC	6 cut(s)	291, 536, 601, 614, 806, 2762
Kpn2I	TCCGGA	1 cut(s)	335
LguI	GCTCTTC	1 cut(s)	578
LmnI	GCTCC	7 cut(s)	385, 803, 1028, 1412, 1587, 1829, 1956
Lsp1109I	GCAGC	7 cut(s)	280, 678, 1241, 1316, 1413, 1825, 2168
LweI	GCATC	8 cut(s)	1280, 1344, 1477, 1840, 1873, 2213, 2305, 2545
MaeI	CTAG	5 cut(s)	1301, 1445, 2631, 2759, 2830
MaeII	ACGT	1 cut(s)	1763
MaeIII	GTNAC	4 cut(s)	1294, 2120, 2406, 2606
MbiI	CCGCTC	1 cut(s)	1407
MfeI	CAATTG	1 cut(s)	995
MflI	RGATCY	6 cut(s)	1186, 1588, 1651, 1801, 2356, 2468
MhlI	GDGCHC	4 cut(s)	383, 1881, 1931, 1994
MlsI	TGGCCA	1 cut(s)	1001
MluNI	TGGCCA	1 cut(s)	1001
MlyI	GAGTC	4 cut(s)	472, 1615, 1715, 2050
MmeI	TCCRAC	2 cut(s)	504, 2755
Mox20I	TGGCCA	1 cut(s)	1001
Mph1103I	ATGCAT	1 cut(s)	1273
MroI	TCCGGA	1 cut(s)	335
MroXI	GAANNNNTTC	3 cut(s)	2245, 2339, 2342
MscI	TGGCCA	1 cut(s)	1001
MslI	CAYNNNNRTG	2 cut(s)	471, 1279
Msp20I	TGGCCA	1 cut(s)	1001
MspA1I	CMGCKG	1 cut(s)	864
MspCI	CTTAAG	2 cut(s)	221, 1157
MspI	CCGG	6 cut(s)	297, 336, 409, 422, 809, 2225
MspR9I	CCNGG	5 cut(s)	148, 423, 810, 2226, 2261
MunI	CAATTG	1 cut(s)	995
MvaI	CCWGG	2 cut(s)	148, 2261
MvnI	CGCG	2 cut(s)	538, 1412
MwoI	GCNNNNNNNGC	4 cut(s)	299, 418, 1043, 1926
NciI	CCSGG	3 cut(s)	423, 810, 2226
NlaIII	CATG	8 cut(s)	236, 1240, 1364, 1378, 1457, 1535, 2198, 2211
NlaIV	GGNNCC	2 cut(s)	948, 2418
NmuCI	GTSAC	3 cut(s)	2120, 2406, 2606
NsiI	ATGCAT	1 cut(s)	1273
NspI	RCATGY	1 cut(s)	1535
NspV	TTCGAA	1 cut(s)	1573
PagI	TCATGA	2 cut(s)	232, 1374
PciI	ACATGT	1 cut(s)	1531
PciSI	GCTCTTC	1 cut(s)	578
PcsI	WCGNNNNNNNCGW	1 cut(s)	656
PdmI	GAANNNNTTC	3 cut(s)	2245, 2339, 2342
PfeI	GAWTC	7 cut(s)	229, 332, 403, 1100, 1496, 1541, 2462
PflMI	CCANNNNNTGG	1 cut(s)	1085
PkrI	GCNGC	9 cut(s)	295, 613, 693, 1134, 1231, 1306, 1428, 1840, 2158
PleI	GAGTC	4 cut(s)	471, 1614, 1715, 2050
PpsI	GAGTC	4 cut(s)	471, 1614, 1715, 2050
PscI	ACATGT	1 cut(s)	1531
PsiI	TTATAA	1 cut(s)	314
Psp6I	CCWGG	2 cut(s)	146, 2259
PspFI	CCCAGC	2 cut(s)	868, 1339
PspGI	CCWGG	2 cut(s)	146, 2259
PspN4I	GGNNCC	2 cut(s)	948, 2418
PspPI	GGNCC	3 cut(s)	40, 1754, 2416
PstI	CTGCAG	4 cut(s)	696, 1039, 1989, 2442
PsuI	RGATCY	6 cut(s)	1186, 1588, 1651, 1801, 2356, 2468
RsaI	GTAC	4 cut(s)	985, 2072, 2170, 2436
RsaNI	GTAC	4 cut(s)	984, 2071, 2169, 2435
RseI	CAYNNNNRTG	2 cut(s)	471, 1279
SapI	GCTCTTC	1 cut(s)	578
SatI	GCNGC	9 cut(s)	294, 612, 692, 1133, 1230, 1305, 1427, 1839, 2157
Sau96I	GGNCC	3 cut(s)	40, 1754, 2416
ScaI	AGTACT	1 cut(s)	2170
SchI	GAGTC	4 cut(s)	472, 1615, 1715, 2050
ScrFI	CCNGG	5 cut(s)	148, 423, 810, 2226, 2261
SduI	GDGCHC	4 cut(s)	383, 1881, 1931, 1994
SfaNI	GCATC	8 cut(s)	1280, 1344, 1477, 1840, 1873, 2213, 2305, 2545
SfcI	CTRYAG	8 cut(s)	692, 1035, 1519, 1870, 1985, 2081, 2328, 2438
SfuI	TTCGAA	1 cut(s)	1573
SinI	GGWCC	1 cut(s)	1754
SmiMI	CAYNNNNRTG	2 cut(s)	471, 1279
SmlI	CTYRAG	7 cut(s)	221, 1157, 1484, 1547, 1633, 1844, 2765
SmoI	CTYRAG	7 cut(s)	221, 1157, 1484, 1547, 1633, 1844, 2765
SsiI	CCGC	8 cut(s)	77, 538, 611, 862, 1132, 1405, 1410, 1740
SspI	AATATT	1 cut(s)	1006
SspMI	CTAG	5 cut(s)	1301, 1445, 2631, 2759, 2830
StyD4I	CCNGG	5 cut(s)	146, 421, 808, 2224, 2259
StyI	CCWWGG	3 cut(s)	56, 1504, 2033
TaiI	ACGT	1 cut(s)	1766
TaqI	TCGA	5 cut(s)	542, 632, 1573, 1815, 1881
TaqII	GACCGA	1 cut(s)	1181
TatI	WGTACW	2 cut(s)	2070, 2168
TauI	GCSGC	2 cut(s)	614, 1135
TfiI	GAWTC	7 cut(s)	229, 332, 403, 1100, 1496, 1541, 2462
TscAI	CASTG	9 cut(s)	117, 190, 383, 595, 1336, 1921, 1994, 2125, 2532
TseFI	GTSAC	3 cut(s)	2120, 2406, 2606
TseI	GCWGC	7 cut(s)	293, 691, 1229, 1304, 1426, 1838, 2156
Tsp45I	GTSAC	3 cut(s)	2120, 2406, 2606
TspRI	CASTG	9 cut(s)	117, 190, 383, 595, 1336, 1921, 1994, 2125, 2532
Van91I	CCANNNNNTGG	1 cut(s)	1085
Vha464I	CTTAAG	2 cut(s)	221, 1157
VpaK11BI	GGWCC	1 cut(s)	1754
XapI	RAATTY	4 cut(s)	367, 1556, 2338, 2700
XceI	RCATGY	1 cut(s)	1535
XmiI	GTMKAC	1 cut(s)	1609
XmnI	GAANNNNTTC	3 cut(s)	2245, 2339, 2342
XspI	CTAG	5 cut(s)	1301, 1445, 2631, 2759, 2830
ZrmI	AGTACT	1 cut(s)	2170
Zsp2I	ATGCAT	1 cut(s)	1273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.