Rh5DG276600

Nucleolar pre-ribosomal-associated protein 1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
33839738 .. 33853053
13316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG276600.1

Sequence Viewer

Length: 7713 bp
ATGGAAGAAGGAAGCTCAGCCTGCGAGGATAAAGTTATGGTGGAGGAAGACTATGACAGTGAGGTTATGGGAGAAGAATTGCCGAAAGTTGAGCTTAAGGAGAATCATGAAGCGAAAGTTAAAGAACTATTGCATAAGATTACTTCTAATGAGATTAAATTATGCGCTGCCGGTGCGAAAGAGTTTATAAAGTTGCTGAAAGGTGATTCCGGAGGTGAATTGCTGTATTACTATGTGCAAAATTCAGCTCAGTGCTCGGAGCTTCTGGGTGCGTGGAATCTCCGGCGAGGGAAGCCGGGGATGTTTTATATAGTTAAGTTGATTTCTGTTGTTTTGAGTCATCCTGATGGGGTTTATGAAGCAAATGATATGGGGAGGTTGGGGGTGAGTAGGGTGTTGGACAAGTTTGCGCGGTCGATTATTGAGCAACAGTTGGGAGATGTGCATAAGGAGTTGAAGAGCAGTGAAGCTAAGCGCCAGAAGGCGGCGCTTTTGCTTTTGGCTTCGATTGTGAGGCGTGGATCGGTGTTGGCGTCTGAGGTGGAAAAGAAGTTTGATTTCAAGCTGCAGGGGTTTTGCAAGTTGGGGGAGTATAAAATGAGGCCAAATGAGAAGAGGAGGAAGCTGTCATTGAGGAAGTTGTTTGTTGGGTTTGCAATGTCGTTTCTGGAGGTGGGAGCGCCGGGATTGTTGAGGTCGGTTATACGGCAGAAGGAAATGTATTCTTGTGTCCTCCGCTGGCTGGGGAATGATGATGAGGAGACAGTTATATATGTTCTGTCCACATTGCAGAACAGGATACTTGTTGAGGGTTCATCGGTTCCCCCTGCCCTTCGGAGTGTTCTGTTTGGGAGTGGTACTTTAGAACAATTGGCCAATATTTCTGGAAGGGAGAATGGTGGAGCTCCTGCAGAATTGGCATACAGGGTCTTAGTTATGGTTTGCACAGATCCATCTAATGGCCTAATGGCAGATTCAAAGAGACACCTGAAGGGCAATTTAAAGCGGCAAATAGACCTAATGAAGAAGCTTAAGGTGACCGAGATTGGCTACCACAGGGATCTGCTTTTGGCTGTTGTTAGCGGGAGACCGTCTCTTGGTGCAGCATACATGGAAGAGTTCCCTTACAATCTTGAAGATTATGCATCACCCAAATGGTTTTCTGTTGTTACTCTAGCAGCAGACTTGGTTTCCTCTGTGGGCTGTGGCATCCCAGCCTTGTTTGACAATGTTCATGTGCAGGATGTCATGAAATGCTTGTATCCTCGTCAGTTCAACCGCTCCACGATCAATAAAGGGCTGCTTCACTCTGATTTTCTAGTGAAGCATGGAACTTTAAGGCATCTTTTAGAGGCACTCAAGTTGTTAGATTCCTTCCTTGGTGTTTTAAACTGTAGAGACCAACATGTTTCGGAATCTCTCAAGCAAGAATTTCAAAATGAAGTTCGAAGCTTGCTCCCAGATCCTCAACTTTTTAAGAGTCTACTCTCTTCTATGAGTAGCAACTCAAGAAAGAGGACAGCAGATCTGGAGAAGTTCCCAGAACATAGCCCGAAGAATGTGAAAAAATTGAAAACAGATTTTGGAAACAAGGACTCAGATATTGTTGTTGGCGGAATAAGTTTTGGTCCAGATACGTCCGAAAATGAAGATAGTCTTGTGAATGTTATGGCAGATCTTTGGGGTTTCGATCCTTGCTCCACACCTATTACTGCACTCAAGGATGCAGACTTATATTTCTACTGTAGGGTGCTCGATGCTTTCAAAATATATCTTCGGATAATGCCCACTGGCTTGGAGGGCTCATTTGAGTTCCTTATGAAGCTCCTAAGCAGTCCTTTAGCATTACAAAATAATCTGCAGTGCTCTCTTTTGTCTTTGCTAATAGAATACATTGGATGGTCTCCAAGGAATAGAACACCAGTTAAGACTCCACCCTTGATGTACAAACATCTACAGACATTGATGAAGTTGCTGATTTTTTCACCACTCAGTGACATAAAAGATCAAGCATACTGTCTCACACAAGCAGCTATGTTAAGTACTGGTGCTTTTGACAAAAACCAACATGAAATTGCATCATGGTTCTTGTTTATACCGGGTTTTGATAGAGGAAAATCTTCGGTTGAAGTCCTGGGGCTGGGAGTATTACAAAGCTTGGCTAATGCTGTCATCTCATTCTTATCTGATGCCGTTTGTACTACAGGGAAGAATTTCTTCAAGCATTGGGATCTTATTGTTAAGCGTGATAACTACCATTTGGAAACTGTTAAAGCTGCAGATGTGTCACCTCAGGCCCCTCTAATCTTACGGGTACTGCAGAATTGTCTGAGATTGCTTGATTCTGGATCTGGGACTTTTTCATTACCTGAGAAGACAATGATATCTACCTACGTGTGCAATACGCTGAAATATATCTTGAAAACTCAGGTTGATGCACGGTTTCTATCTTCTATGATTTGCTCACTCTTGGTTGAGAGACTTGGTGACTGTTCTGCCACTCATCAGTCTAGGGGCAACTGTGAATGGAGGCCGTTGAACAGTTTATTTTTGTTTTCCCAGAGTATATCTGACCGTGAAATTTGTTGCATTTCTTCTATTGACAATAAGGCTAAGCCTTCTGGTAGTTCTTTTGCACTAGCGCTTGAGGAAGTTGGAAGACTTGCAAGAGGTGGGAGTGATGGTGAAGTAGCTGGAATAACCAAAGCCTTCTTCTCCTCATTTATCTGTACAACGCCTGATGAAATATTAGCAAACTTTCCATCAGTTATGGCAATTTCACAATGCCTTGGTCTTCCATTCACTCTCTTTTCATCAATTTTCTTTCTTGAACCCACCTTTCTCCCCAGAGTTTCTAAGTTTTGGCCTGAAGTTTTTTTTCCTGGGCTTAGTATGGCTCTAACCAATATCTGTTGCAAAGGAGGAAAAGAAATTGCCTGTGGATCTCCTGATCATGCTTCTTATACAGGAGAAGCAATATGTAACCAAAATTGTGGTGCAAATGAAGCTGCTGCTACTGCCTTCAGTTTATTTTTGATGAAGGCACCTTTCCACGTTTTGTTCCCTGCCATTATGTGCATTGACGGTCCTTATTCGTTAGAGCCCTCAAAGATACAAGACCTGCTTTTGGCTAAACTATCAGACTGTGCAACTGATTACCACCTTATTTCCTATTTGCGCCTTGTGTTATTTTGGCTTTATCATATACGGTTGTCTTGTACAGTTGAACAATTAGTCGGTTTCCAACAACTTTCTGAGATTTGCTCAGTTCTGGTGAAGGACTTATTATCTCAACTATTGGTGGCTGATTCTGATTCCCTCAGTACCTCCAGTGTAAATCTATCAAGTCATGATATTCAAAAGGTGGCTGAAACTATCTTTTATCATCCTGCAATAACTACATCGTTATCCTGTCCTTTGGAGTGTAGCGAAGACTTGCCAGAGGGTAACCTACCAGACAACGTGGATGCTCTCATCAATTTATCGAGGGGGAAAGTTCATAGATTAGACCATCATGCCTTGAATATGTTGGCAACAACTTGCAAGTACTTGTTTTCTCTGTGCAATGACAACCAATTTACACTTGAAGTAGAAGATGGGGATGCTACAAAGTTTGTGAAAGCATTCAACGTCCTGGTTCATAAGCTCTTTCAGGAAGTCAAGGTCAAATTTGATCACAGCATTAGAAGTAACAATTGTATGGCTTTCCTCCCAATATTTTATGCTTTGCATGCTTTGAGTGGTTTTATATCTCCATTTGAGCTACTTGAATTAGTGCGTTGGATGTTTAGTAGAGTTGATTTGGATGGCAACCAGAAATCTGCTATTTGTTTTGGATCTTGTATTGCTGGTGGTGCATTTAGAAATCTATCTTATTATTTGCAGCAGCCAAATACAAAGAGAAAGGCATTTGATTTGTTTTGGATGATGGAAGAAAACAATATTAATAGCGACATTGTTGAAGAAATCTATATTAAGATATCAAAGCTTGCCTTTCTTTTGGAATCAGAAGTTGTAGATCATTGCTTGCTGGAAGCTATGAATGTGGTATACAGGCAGAAATGTATGCAAAAGTGTAATTTTCATCCATTAATAATAGTGATGTCGAGAGTTATAGCAACCACTCCAATAGAAATGCTTTCCCATTGCATTTACAGAACAAGCAAGACGAAAGCTAGATTGTTGTCTCTTCTTATTGATCTGAGCTCTATGCATTTGTCTACCTTTGGGCACTTACTTTTTGGTACTCTAGATACTAGTTGTCTACATAATGGCAATGTGACATCTGACCTAGCCCTTTCAGATGACGACTATATGATGCTTCTGCCTTCTGCTGTGTCCTACATGAATTCAGTTTTAATGAAATTTGGAGAGCCGTGCTACAGGCATTTTAGAAATATTCCTTCCTTTTATTCAAAGATTATTTTGGATGGTCTCCTTCATTGGAAGAATTTTGTTTCTCGTGATGTGTTTCATGAAGATTTTGGAGAGGTTTTGCCGTCATCTGCGGAAGAAGTTCTTAACATCATTAATGATAGTCTTCTTGGCAAAGCGATTTGTATGCTGCACTATCACTATGCTTTGAATGCAGATTCAGTAGAAAGGAAAGACCGATTAAAGCATTTCAGTTCCATTTTCCCAGCTTCTGTGGGACACAAGGAGCTGATAGACTGGGATGTTGGTGGATTGGGTTCTCACTCTTTCAATGAAACATTAAACCTTGTAAATAAAATTCATGCAAAGGTCTCGTTTTGTAGGATGCTGTTATTCCCCAAAGATACTCAGGTTCACTCTCTTTCAATTGAAGCCAGTGGGAACCTGAAAGACGTTCCTCTGGACATGGAAGATAACAAAGGTAACTCCTCACAAATGCAGTTTTTGAACATCTTGGTGGATATGTGGCAATGCATTGTTAAAACAGTCCCTTCAGTCTTTCATACTTCTCAAAAGGGACACAGCACAGATAGTTCTTCATTGTGGAGATACCTGGAAGTTCTGATATTGAAAAGCATTTTTGAAGTGTCTAGAGAGATGCATGACAGTTTAATCAGAGCACAATCTATACCCTTCCTAGAGAAATTGATGAAACCAGCTCTTCTGCATAGGTTTGACGATCCAACAACTTTGCAAATGCTGCGTGATCTTTTGACTTTTCTATCTGGGGGGAAATTTTCACGTGTTCCCTATCTTCAGCTTTTACTTGCACACTCTCAATTTGTGCCTACTATTCGTTCACTATCCAAACCATCACATTCTTCCCATGTGGGTGCCTTTTCTAGGCCTATGTCTAGCATTCTTAGATCACCTGTTTCCCTTACCTCAAAACAAAATGTAGATGATGGGGAATGCGATCTAGAAACATCTGAGCTGTACGTTAAACAGTTGGAGGTTATCAAATTACTGCGGACACTCCTTCCTTTGAGGTTTCAACAGGATGGTTTTGACTTTGGAAAAGATTTAGGCATTGATCTTAGGGAAGTTCATTTACTACTTTTGTCTTCTTATGGTGCAACACTTTCTGAAATTGATGTGGAGATATACAATCTGATGCGCACAATTGAGTGTATTGATGGTTTGGAGCTTGTCCGATTTGCTGGAATGGATTACCTTTGGGGCAGTGCTGTGTTGAAGATAGAAAAGGAACGGAATCTGGAGCAGAGTTTGTCTTATGATACAATCAATGATGCTGAAGCAGTAAAAGAACACCGTAGAAATCAAGTTAGAGAAAATCTTGCGATTGACCCCAAAATATGCGCATCCACTTTGCTATATTTTCCCTACCATATAGTGGCATCTGATGAGCTATTATCCTTGAACAAGTTTCAAACAGATCCTGTTGATCATCTGCATGTGTTATGCTCCCCCGATGTTGACGATAAAGAAAGATATAATCCTATTTTCATCTTGCGCTTCTCTATGCATTGTCTTTCAGAAGGTTACATTGAACCCTTGGAGTTTGCTGGTTTAGGCTTACTTGCTATTGCCTTTATGAGTATTTCATCACCTAATGACAAGATAAGAAGTTTGGGTTATGAAACTCTTGAAACATTGCAGGACAAGTTGAAGACATGTCAAAAGAAGAAGGGTGTCACGCAAATTAAGCTTCTGTTGCTTTATGTGGAAAATGGTATACAACAAATAGGGCAGAGAATCTCTTCTGTAAATGCTATTTTTGCTGCAGAGACATCCCTCATATTATTAGATACTTCACATGAACATTATGCAACTTTACTAACGCTATTGAAGAGATCGTCTGCATTGAACACGAAGAATGTACCTTTCTTTAGCAATTTTTTCTGGAGTTCCTCTATTAACTTCAGATCAGAAAGGTTGTGGATACTGCGGTTATTATATGTGGGGCTGAACTTTGACGATGATGCACATGTTTATATCAAGAATTCCATTCTTGAGACTCTGTTGAGTTTCTATGTTTGTCCCCTTTCAGATAAGGAGTCCAAGGAACTAATTCTTCAGGTAGTGAAGAAGTCAGTTAAATTGCATAAGTTGGCTCGTCATCTAGTTGAAAAATGTGGTCTGTTTCCATGGTTATCATCTCTTCTCTCGATATCCTGTGAAAGTCGTCTCGAAGATGAAACTTTGTGCTTGTTGCAGTTGAGTGTGGTATCAGAGGTGGTCAATGATGCTGTTTCTTCAAGAAACATTACTGAATGGTTGCAGAACATTGCCCTCGAGCAGCTCATGGAGTTCACATCTCATCTCTACAAATTTCTTGCGACTGATGTGACTTTGATAACAGATAATGTTGCAGTAGTCAATCAAATTCTTAAAACAATAATATCTACATTCAAGGTATCCCAAAAGAGGACGATATATCAGCCACATTTTGTTGTATCATTCGACGGTTTATATAGAATATATAAGGCGGTCAAGGTCTACAATGATGCAAGATCATGTGCTACTGTAGAGTTTGGCCTTAAAGCCATTCTTATGAGCGCCCCTCCAGCTTCCATCTTTTATGTGAGTGGTGAAAAGCTGTCAAGTTTTATCATGTGGGCAATTTCCAGTGCTGTAGAAGCAGACTCTGCAACTATGCTTCATTCCAATGAATCTCATCAATGTTTCACTACTATTCCAGAGGAAAAAGAGGTGTATAAGAATTCTTTGATTTCAAAACTATTGCGTTGGCTAACTGCAACTGTAATTCTTGGGAAGCTTGACTGGACATTCAGTGACGTGGATCCTGAGTTCTCTAAAAGTTTGAATTTAAAAAGTTTGCACTCTTTAATAACTCATGCTGACAAGGCATGTGGAGAAAGGGGCCGAAGCAGATATGGTTGTGAAGAGATCTTGGCATCAGCAATTCTCTACCTTCAACAGCTCTCTGGAACAAATTACAAAATGCTACCATCTGTCAATGCCGCCCTTAGTCTTCTCCTTTCCAATGCCTCCATTTATGCAGGTTTCTTGCATGATAATGAAACTGTCCAATCACTTTGGCGGAACATACGTTGCCCTAATGAAGCTAATCCTGCCTGGAGATGGTCATTTGACCAGCCATGGAAGGATCCGATGTTGGAAGTCACTGATTCCCAGAAGATGGAGGAACTCCATGCTTGTGAATCACTTTTAGTTATATTTTCAAATCTGCTTGGAAAACAATCATCAGAATTTCAGGTTTCATCAACACAGGATATAGATAGATTTGGTGTATTTGAGTGGGAAAAAAGTATCATAACATCTCAGAAATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

2570

Amino Acids

289.08

Weight (kDa)

6.18

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Npa1 PF11707 85 - 388 2e-43 Ribosome 60S biogenesis N-terminal
NopRA1 PF16201 1992 - 2182 1.4e-43 Nucleolar pre-ribosomal-associated protein 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 188
Acc16I TGCGCA 2 cut(s) 5552, 5755
Acc36I ACCTGC 2 cut(s) 3129, 7409
AccB1I GGYRCC 2 cut(s) 3043, 5267
AccB7I CCANNNNNTGG 3 cut(s) 959, 5788, 7558
AccBSI CCGCTC 1 cut(s) 1281
AccI GTMKAC 6 cut(s) 1483, 4050, 4220, 4264, 6130, 6894
AccII CGCG 1 cut(s) 412
AccIII TCCGGA 1 cut(s) 209
AcoI YGGCCR 1 cut(s) 873
AcuI CTGAAG 8 cut(s) 1010, 2889, 3007, 4911, 5174, 5709, 6301, 6455
AcvI CACGTG 1 cut(s) 5177
AcyI GRCGYC 1 cut(s) 533
AdeI CACNNNGTG 1 cut(s) 1994
AfeI AGCGCT 1 cut(s) 2643
AflII CTTAAG 2 cut(s) 95, 1031
AflIII ACRYGT 5 cut(s) 1405, 2394, 5176, 6068, 6382
AhlI ACTAGT 1 cut(s) 4256
AjiI CACGTC 1 cut(s) 7195
AjnI CCWGG 5 cut(s) 2133, 2881, 3633, 4986, 7493
AjuI GAANNNNNNNTTGG 2 cut(s) 2696, 2728
AloI GAACNNNNNNTCC 2 cut(s) 7190, 7222
Alw21I GWGCWC 6 cut(s) 257, 907, 1755, 1868, 4208, 5056
AlwNI CAGNNNCTG 3 cut(s) 4646, 5834, 7043
Ama87I CYCGRG 1 cut(s) 6689
Aor13HI TCCGGA 1 cut(s) 209
Aor51HI AGCGCT 1 cut(s) 2643
AoxI GGCC 9 cut(s) 602, 873, 961, 2295, 2531, 2864, 5279, 6931, 7279
AseI ATTAAT 3 cut(s) 3945, 4091, 4530
Asp700I GAANNNNTTC 7 cut(s) 2119, 2213, 2216, 3623, 4515, 6154, 6465
AspS9I GGNCC 4 cut(s) 1628, 2296, 3086, 7279
AsuC2I CCSGG 3 cut(s) 297, 684, 2100
AsuII TTCGAA 1 cut(s) 1447
AvaI CYCGRG 1 cut(s) 6689
AvaII GGWCC 2 cut(s) 1628, 3086
AxyI CCTNAGG 1 cut(s) 2292
BaeGI GKGCMC 1 cut(s) 4233
BaeI ACNNNNGTAYC 4 cut(s) 4770, 4803, 6329, 6362
BalI TGGCCA 1 cut(s) 875
BamHI GGATCC 2 cut(s) 7198, 7525
BanI GGYRCC 2 cut(s) 3043, 5267
BanII GRGCYC 4 cut(s) 907, 1805, 3105, 4208
BarI GAAGNNNNNNTAC 2 cut(s) 5469, 5501
BauI CACGAG 1 cut(s) 4461
BbrPI CACGTG 1 cut(s) 5177
BbsI GAAGAC 9 cut(s) 54, 2381, 2665, 2786, 3438, 4532, 5490, 6071, 7382
Bbv12I GWGCWC 6 cut(s) 257, 907, 1755, 1868, 4208, 5056
BceAI ACGGC 5 cut(s) 722, 2177, 2518, 4360, 4483
BcgI CGANNNNNNTGC 4 cut(s) 4543, 4577, 4728, 4762
BciT130I CCWGG 5 cut(s) 2135, 2883, 3635, 4988, 7495
BciVI GTATCC 4 cut(s) 792, 1272, 6330, 6823
BclI TGATCA 3 cut(s) 2950, 3673, 5839
BcnI CCSGG 3 cut(s) 297, 684, 2100
BcuI ACTAGT 1 cut(s) 4256
BfoI RGCGCY 5 cut(s) 478, 491, 683, 2645, 6957
BfrI CTTAAG 2 cut(s) 95, 1031
BfuAI ACCTGC 2 cut(s) 3129, 7409
BfuI GTATCC 4 cut(s) 792, 1272, 6330, 6823
BglII AGATCT 3 cut(s) 1525, 1675, 7305
BlpI GCTNAGC 3 cut(s) 16, 471, 2613
BmcAI AGTACT 2 cut(s) 2044, 3548
Bme1390I CCNGG 8 cut(s) 297, 684, 2100, 2135, 2883, 3635, 4988, 7495
Bme18I GGWCC 2 cut(s) 1628, 3086
BmeT110I CYCGRG 1 cut(s) 6689
BmgBI CACGTC 1 cut(s) 7195
BmgT120I GGNCC 4 cut(s) 1628, 2296, 3086, 7279
BmiI GGNNCC 8 cut(s) 822, 2298, 3045, 4817, 5269, 7200, 7280, 7527
BmrFI CCNGG 8 cut(s) 297, 684, 2100, 2135, 2883, 3635, 4988, 7495
BmrI ACTGGG 1 cut(s) 4681
BmuI ACTGGG 1 cut(s) 4681
BpiI GAAGAC 9 cut(s) 54, 2381, 2665, 2786, 3438, 4532, 5490, 6071, 7382
BplI GAGNNNNNCTC 6 cut(s) 1078, 1110, 3248, 3280, 6943, 6975
BpmI CTGGAG 7 cut(s) 689, 1550, 3313, 5672, 6319, 6945, 7516
Bpu10I CCTNAGC 1 cut(s) 1829
Bpu1102I GCTNAGC 3 cut(s) 16, 471, 2613
Bpu14I TTCGAA 1 cut(s) 1447
BpuEI CTTGAG 6 cut(s) 1343, 1406, 1492, 1703, 2666, 6428
BpuMI CCSGG 3 cut(s) 297, 684, 2100
BsaAI YACGTR 2 cut(s) 2395, 5177
BsaHI GRCGYC 1 cut(s) 533
BsaI GGTCTC 5 cut(s) 1081, 1392, 1908, 4439, 4750
BsaWI WCCGGW 1 cut(s) 209
BsaXI ACNNNNNCTCC 2 cut(s) 2668, 2698
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 8 cut(s) 1795, 1922, 2050, 3330, 4676, 4809, 7023, 7184
Bse21I CCTNAGG 1 cut(s) 2292
Bse3DI GCAATG 9 cut(s) 663, 785, 3571, 4021, 4144, 4282, 4910, 6047, 6681
BseAI TCCGGA 1 cut(s) 209
BseBI CCWGG 5 cut(s) 2135, 2883, 3635, 4988, 7495
BseMI GCAATG 9 cut(s) 663, 785, 3571, 4021, 4144, 4282, 4910, 6047, 6681
BseNI ACTGG 8 cut(s) 1795, 1922, 2050, 3330, 4676, 4809, 7023, 7184
BseRI GAGGAG 4 cut(s) 631, 773, 2707, 4852
BseSI GKGCMC 1 cut(s) 4233
BseYI CCCAGC 4 cut(s) 742, 1213, 2140, 4639
BsgI GTGCAG 4 cut(s) 1122, 1259, 1698, 4550
Bsh1236I CGCG 1 cut(s) 412
Bsh1285I CGRYCG 1 cut(s) 416
BshFI GGCC 9 cut(s) 604, 875, 963, 2297, 2533, 2866, 5281, 6933, 7281
BshNI GGYRCC 2 cut(s) 3043, 5267
BsiEI CGRYCG 1 cut(s) 416
BsiHKAI GWGCWC 6 cut(s) 257, 907, 1755, 1868, 4208, 5056
BsiHKCI CYCGRG 1 cut(s) 6689
BsiSI CCGG 6 cut(s) 171, 210, 283, 296, 683, 2099
BslFI GGGAC 5 cut(s) 2368, 4665, 4907, 4965, 6420
BsmBI CGTCTC 2 cut(s) 1098, 6587
BsmFI GGGAC 5 cut(s) 2368, 4665, 4907, 4965, 6420
BsmI GAATGC 4 cut(s) 3623, 4591, 5292, 5351
BsnI GGCC 9 cut(s) 604, 875, 963, 2297, 2533, 2866, 5281, 6933, 7281
Bso31I GGTCTC 5 cut(s) 1081, 1392, 1908, 4439, 4750
BsoBI CYCGRG 1 cut(s) 6689
Bsp119I TTCGAA 1 cut(s) 1447
Bsp1286I GDGCHC 9 cut(s) 257, 907, 1755, 1805, 1868, 3105, 4208, 4233, 5056
Bsp13I TCCGGA 1 cut(s) 209
Bsp1407I TGTACA 3 cut(s) 1944, 2729, 3218
Bsp1720I GCTNAGC 3 cut(s) 16, 471, 2613
Bsp19I CCATGG 2 cut(s) 6542, 7517
BspANI GGCC 9 cut(s) 604, 875, 963, 2297, 2533, 2866, 5281, 6933, 7281
BspEI TCCGGA 1 cut(s) 209
BspFNI CGCG 1 cut(s) 412
BspHI TCATGA 4 cut(s) 106, 1248, 3349, 4474
BspLI GGNNCC 8 cut(s) 822, 2298, 3045, 4817, 5269, 7200, 7280, 7527
BspMAI CTGCAG 6 cut(s) 570, 913, 1863, 2281, 2322, 6181
BspMI ACCTGC 2 cut(s) 3129, 7409
BspQI GCTCTTC 2 cut(s) 452, 5100
BspT104I TTCGAA 1 cut(s) 1447
BspT107I GGYRCC 2 cut(s) 3043, 5267
BspTI CTTAAG 2 cut(s) 95, 1031
BspTNI GGTCTC 5 cut(s) 1081, 1392, 1908, 4439, 4750
BsrBI CCGCTC 1 cut(s) 1281
BsrDI GCAATG 9 cut(s) 663, 785, 3571, 4021, 4144, 4282, 4910, 6047, 6681
BsrFI RCCGGY 1 cut(s) 170
BsrGI TGTACA 3 cut(s) 1944, 2729, 3218
BsrI ACTGG 8 cut(s) 1795, 1922, 2050, 3330, 4676, 4809, 7023, 7184
BssAI RCCGGY 1 cut(s) 170
BssNAI GTATAC 2 cut(s) 4051, 6131
BssNI GRCGYC 1 cut(s) 533
BssSI CACGAG 1 cut(s) 4461
BssT1I CCWWGG 7 cut(s) 1378, 1907, 2788, 5949, 6456, 6542, 7517
Bst1107I GTATAC 2 cut(s) 4051, 6131
Bst2BI CACGAG 1 cut(s) 4461
Bst2UI CCWGG 5 cut(s) 2135, 2883, 3635, 4988, 7495
BstACI GRCGYC 1 cut(s) 533
BstAFI CTTAAG 2 cut(s) 95, 1031
BstAPI GCANNNNNTGC 2 cut(s) 5134, 7043
BstAUI TGTACA 3 cut(s) 1944, 2729, 3218
BstBAI YACGTR 2 cut(s) 2395, 5177
BstBI TTCGAA 1 cut(s) 1447
BstC8I GCNNGC 6 cut(s) 22, 740, 1454, 3732, 3990, 4028
BstDSI CCRYGG 2 cut(s) 6542, 7517
BstEII GGTNACC 2 cut(s) 1036, 3446
BstENI CCTNNNNNAGG 1 cut(s) 5275
BstFNI CGCG 1 cut(s) 412
BstH2I RGCGCY 5 cut(s) 478, 491, 683, 2645, 6957
BstMCI CGRYCG 1 cut(s) 416
BstNI CCWGG 5 cut(s) 2135, 2883, 3635, 4988, 7495
BstNSI RCATGY 6 cut(s) 1409, 3734, 5852, 6072, 6386, 7269
BstPI GGTNACC 2 cut(s) 1036, 3446
BstSCI CCNGG 8 cut(s) 295, 682, 2098, 2133, 2881, 3633, 4986, 7493
BstSLI GKGCMC 1 cut(s) 4233
BstUI CGCG 1 cut(s) 412
BstV2I GAAGAC 9 cut(s) 54, 2381, 2665, 2786, 3438, 4532, 5490, 6071, 7382
BstXI CCANNNNNNTGG 2 cut(s) 1795, 2993
BstZ17I GTATAC 2 cut(s) 4051, 6131
Bsu36I CCTNAGG 1 cut(s) 2292
BsuI GTATCC 4 cut(s) 792, 1272, 6330, 6823
BsuRI GGCC 9 cut(s) 604, 875, 963, 2297, 2533, 2866, 5281, 6933, 7281
BtgI CCRYGG 2 cut(s) 6542, 7517
BtrI CACGTC 1 cut(s) 7195
BtsI GCAGTG 3 cut(s) 469, 1868, 5623
BveI ACCTGC 2 cut(s) 3129, 7409
Cac8I GCNNGC 6 cut(s) 22, 740, 1454, 3732, 3990, 4028
CaiI CAGNNNCTG 3 cut(s) 4646, 5834, 7043
CciI TCATGA 4 cut(s) 106, 1248, 3349, 4474
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 4 cut(s) 1628, 2296, 3086, 7279
CseI GACGC 1 cut(s) 522
CspCI CAANNNNNGTGG 2 cut(s) 7249, 7284
DraI TTTAAA 3 cut(s) 1002, 1389, 7227
DraIII CACNNNGTG 1 cut(s) 1994
EaeI YGGCCR 1 cut(s) 873
EciI GGCGGA 2 cut(s) 1629, 7474
Ecl136II GAGCTC 2 cut(s) 905, 4206
Eco130I CCWWGG 7 cut(s) 1378, 1907, 2788, 5949, 6456, 6542, 7517
Eco147I AGGCCT 1 cut(s) 5281
Eco24I GRGCYC 4 cut(s) 907, 1805, 3105, 4208
Eco31I GGTCTC 5 cut(s) 1081, 1392, 1908, 4439, 4750
Eco32I GATATC 3 cut(s) 2385, 3981, 6567
Eco47I GGWCC 2 cut(s) 1628, 3086
Eco47III AGCGCT 1 cut(s) 2643
Eco53kI GAGCTC 2 cut(s) 905, 4206
Eco57I CTGAAG 8 cut(s) 1010, 2889, 3007, 4911, 5174, 5709, 6301, 6455
Eco72I CACGTG 1 cut(s) 5177
Eco81I CCTNAGG 1 cut(s) 2292
Eco88I CYCGRG 1 cut(s) 6689
Eco91I GGTNACC 2 cut(s) 1036, 3446
EcoICRI GAGCTC 2 cut(s) 905, 4206
EcoNI CCTNNNNNAGG 1 cut(s) 5275
EcoO109I RGGNCCY 1 cut(s) 2296
EcoO65I GGTNACC 2 cut(s) 1036, 3446
EcoRI GAATTC 3 cut(s) 4348, 6397, 7117
EcoRII CCWGG 5 cut(s) 2133, 2881, 3633, 4986, 7493
EcoRV GATATC 3 cut(s) 2385, 3981, 6567
EcoT14I CCWWGG 7 cut(s) 1378, 1907, 2788, 5949, 6456, 6542, 7517
EcoT22I ATGCAT 5 cut(s) 1147, 4215, 4910, 5037, 5922
EcoT38I GRGCYC 4 cut(s) 907, 1805, 3105, 4208
ErhI CCWWGG 7 cut(s) 1378, 1907, 2788, 5949, 6456, 6542, 7517
Esp3I CGTCTC 2 cut(s) 1098, 6587
FaqI GGGAC 5 cut(s) 2368, 4665, 4907, 4965, 6420
FauI CCCGC 1 cut(s) 1076
FbaI TGATCA 3 cut(s) 2950, 3673, 5839
FblI GTMKAC 6 cut(s) 1483, 4050, 4220, 4264, 6130, 6894
FriOI GRGCYC 4 cut(s) 907, 1805, 3105, 4208
FspAI RTGCGCAY 2 cut(s) 5552, 5755
FspI TGCGCA 2 cut(s) 5552, 5755
GsaI CCCAGC 4 cut(s) 746, 1217, 2144, 4643
GsuI CTGGAG 7 cut(s) 689, 1550, 3313, 5672, 6319, 6945, 7516
HaeII RGCGCY 5 cut(s) 478, 491, 683, 2645, 6957
HaeIII GGCC 9 cut(s) 604, 875, 963, 2297, 2533, 2866, 5281, 6933, 7281
HapII CCGG 6 cut(s) 171, 210, 283, 296, 683, 2099
HgaI GACGC 1 cut(s) 522
Hin1I GRCGYC 1 cut(s) 533
HincII GTYRAC 1 cut(s) 5872
HindII GTYRAC 1 cut(s) 5872
HindIII AAGCTT 6 cut(s) 1028, 1450, 2155, 3986, 6101, 7172
HpaII CCGG 6 cut(s) 171, 210, 283, 296, 683, 2099
Hpy99I CGWCG 1 cut(s) 6863
Hsp92I GRCGYC 1 cut(s) 533
Kpn2I TCCGGA 1 cut(s) 209
Ksp22I TGATCA 3 cut(s) 2950, 3673, 5839
LguI GCTCTTC 2 cut(s) 452, 5100
MbiI CCGCTC 1 cut(s) 1281
MfeI CAATTG 4 cut(s) 869, 3694, 4800, 5556
MhlI GDGCHC 9 cut(s) 257, 907, 1755, 1805, 1868, 3105, 4208, 4233, 5056
MlsI TGGCCA 1 cut(s) 875
MluNI TGGCCA 1 cut(s) 875
MlyI GAGTC 7 cut(s) 346, 1489, 1589, 1924, 6406, 6461, 7034
MmeI TCCRAC 7 cut(s) 378, 2635, 3268, 3761, 5141, 5364, 7515
Mox20I TGGCCA 1 cut(s) 875
Mph1103I ATGCAT 5 cut(s) 1147, 4215, 4910, 5037, 5922
MroI TCCGGA 1 cut(s) 209
MroXI GAANNNNTTC 7 cut(s) 2119, 2213, 2216, 3623, 4515, 6154, 6465
MscI TGGCCA 1 cut(s) 875
MslI CAYNNNNRTG 9 cut(s) 345, 1153, 4889, 5265, 5847, 6947, 7062, 7434, 7575
Msp20I TGGCCA 1 cut(s) 875
MspA1I CMGCKG 1 cut(s) 738
MspCI CTTAAG 2 cut(s) 95, 1031
MspI CCGG 6 cut(s) 171, 210, 283, 296, 683, 2099
MspR9I CCNGG 8 cut(s) 297, 684, 2100, 2135, 2883, 3635, 4988, 7495
MunI CAATTG 4 cut(s) 869, 3694, 4800, 5556
Mva1269I GAATGC 4 cut(s) 3623, 4591, 5292, 5351
MvaI CCWGG 5 cut(s) 2135, 2883, 3635, 4988, 7495
MvnI CGCG 1 cut(s) 412
NciI CCSGG 3 cut(s) 297, 684, 2100
NcoI CCATGG 2 cut(s) 6542, 7517
NlaIV GGNNCC 8 cut(s) 822, 2298, 3045, 4817, 5269, 7200, 7280, 7527
NmuCI GTSAC 9 cut(s) 1036, 1994, 2286, 2486, 4279, 6088, 6742, 7190, 7540
NsbI TGCGCA 2 cut(s) 5552, 5755
NsiI ATGCAT 5 cut(s) 1147, 4215, 4910, 5037, 5922
NspI RCATGY 6 cut(s) 1409, 3734, 5852, 6072, 6386, 7269
NspV TTCGAA 1 cut(s) 1447
PaeI GCATGC 1 cut(s) 3734
PaeR7I CTCGAG 1 cut(s) 6689
PagI TCATGA 4 cut(s) 106, 1248, 3349, 4474
PceI AGGCCT 1 cut(s) 5281
PciI ACATGT 3 cut(s) 1405, 6068, 6382
PciSI GCTCTTC 2 cut(s) 452, 5100
PcsI WCGNNNNNNNCGW 1 cut(s) 530
PctI GAATGC 4 cut(s) 3623, 4591, 5292, 5351
PdmI GAANNNNTTC 7 cut(s) 2119, 2213, 2216, 3623, 4515, 6154, 6465
PflMI CCANNNNNTGG 3 cut(s) 959, 5788, 7558
PleI GAGTC 7 cut(s) 345, 1488, 1589, 1924, 6406, 6460, 7034
PmaCI CACGTG 1 cut(s) 5177
PmlI CACGTG 1 cut(s) 5177
PpsI GAGTC 7 cut(s) 345, 1488, 1589, 1924, 6406, 6460, 7034
Ppu21I YACGTR 2 cut(s) 2395, 5177
PscI ACATGT 3 cut(s) 1405, 6068, 6382
PshBI ATTAAT 3 cut(s) 3945, 4091, 4530
PsiI TTATAA 1 cut(s) 188
Psp124BI GAGCTC 2 cut(s) 907, 4208
Psp6I CCWGG 5 cut(s) 2133, 2881, 3633, 4986, 7493
PspCI CACGTG 1 cut(s) 5177
PspEI GGTNACC 2 cut(s) 1036, 3446
PspFI CCCAGC 4 cut(s) 742, 1213, 2140, 4639
PspGI CCWGG 5 cut(s) 2133, 2881, 3633, 4986, 7493
PspN4I GGNNCC 8 cut(s) 822, 2298, 3045, 4817, 5269, 7200, 7280, 7527
PspPI GGNCC 4 cut(s) 1628, 2296, 3086, 7279
PspXI VCTCGAGB 1 cut(s) 6689
PstI CTGCAG 6 cut(s) 570, 913, 1863, 2281, 2322, 6181
PstNI CAGNNNCTG 3 cut(s) 4646, 5834, 7043
RseI CAYNNNNRTG 9 cut(s) 345, 1153, 4889, 5265, 5847, 6947, 7062, 7434, 7575
SacI GAGCTC 2 cut(s) 907, 4208
SapI GCTCTTC 2 cut(s) 452, 5100
Sau96I GGNCC 4 cut(s) 1628, 2296, 3086, 7279
ScaI AGTACT 2 cut(s) 2044, 3548
SchI GAGTC 7 cut(s) 346, 1489, 1589, 1924, 6406, 6461, 7034
ScrFI CCNGG 8 cut(s) 297, 684, 2100, 2135, 2883, 3635, 4988, 7495
SduI GDGCHC 9 cut(s) 257, 907, 1755, 1805, 1868, 3105, 4208, 4233, 5056
Sfr274I CTCGAG 1 cut(s) 6689
SfuI TTCGAA 1 cut(s) 1447
SinI GGWCC 2 cut(s) 1628, 3086
SlaI CTCGAG 1 cut(s) 6689
SmiMI CAYNNNNRTG 9 cut(s) 345, 1153, 4889, 5265, 5847, 6947, 7062, 7434, 7575
SmlI CTYRAG 9 cut(s) 95, 1031, 1358, 1421, 1507, 1718, 2645, 6407, 6689
SmoI CTYRAG 9 cut(s) 95, 1031, 1358, 1421, 1507, 1718, 2645, 6407, 6689
SpeI ACTAGT 1 cut(s) 4256
SphI GCATGC 1 cut(s) 3734
SseBI AGGCCT 1 cut(s) 5281
SspI AATATT 5 cut(s) 880, 2748, 3717, 3943, 4399
SstI GAGCTC 2 cut(s) 907, 4208
StuI AGGCCT 1 cut(s) 5281
StyD4I CCNGG 8 cut(s) 295, 682, 2098, 2133, 2881, 3633, 4986, 7493
StyI CCWWGG 7 cut(s) 1378, 1907, 2788, 5949, 6456, 6542, 7517
TaqII GACCGA 2 cut(s) 1055, 4626
TatI WGTACW 6 cut(s) 1944, 2042, 2198, 2729, 3218, 3546
TauI GCSGC 3 cut(s) 488, 1009, 7382
TseFI GTSAC 9 cut(s) 1036, 1994, 2286, 2486, 4279, 6088, 6742, 7190, 7540
Tsp45I GTSAC 9 cut(s) 1036, 1994, 2286, 2486, 4279, 6088, 6742, 7190, 7540
TspGWI ACGGA 1 cut(s) 5659
Van91I CCANNNNNTGG 3 cut(s) 959, 5788, 7558
Vha464I CTTAAG 2 cut(s) 95, 1031
VpaK11BI GGWCC 2 cut(s) 1628, 3086
VspI ATTAAT 3 cut(s) 3945, 4091, 4530
XagI CCTNNNNNAGG 1 cut(s) 5275
XbaI TCTAGA 3 cut(s) 4249, 5024, 5353
XceI RCATGY 6 cut(s) 1409, 3734, 5852, 6072, 6386, 7269
XhoI CTCGAG 1 cut(s) 6689
XmiI GTMKAC 6 cut(s) 1483, 4050, 4220, 4264, 6130, 6894
XmnI GAANNNNTTC 7 cut(s) 2119, 2213, 2216, 3623, 4515, 6154, 6465
ZrmI AGTACT 2 cut(s) 2044, 3548
Zsp2I ATGCAT 5 cut(s) 1147, 4215, 4910, 5037, 5922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.