RLG00000033902

Nucleolar pre-ribosomal-associated protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002923
Physical Location & Seq
Reverse (-)
33933198 .. 33942610
9413 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033902

Sequence Viewer

Length: 5457 bp
ATGTTCCCCTGTCTAGCTGCAGATGTGTCACCTCAGGCCCCTCTAATCTTACGGTTACTGCAAAATTGTCTGAGATTGCTTGATTCTGGATCTGGGACTTTTACGTTACCTGAGAAGACAATGATATCTACCTACGTGTGCAATACACTGAAATATATCTTGAAAACTCAGGTTGATGCACGGTTTCTATCTTCTATGATTTGCTCACTCTTGGTTGAGAGACTTGGTGACTGTTCTGCCACTCATCAGTCTAGGGGCAACTGTGAATGGAGGCCGTTGAACAGTTTATTTTTGTTTTCCGAGAGTATATCTGACCGTGAAATTTGTTGCATTTCTTCTATTCACAATAAGGCTAAACCTTCGGGTAGTTCTTTTGCACTAGCGCTTGAGGAAGCTGGAAGACTTGCAAGAGGTGGGAGTGATGGTGAAGTAGCTGGAATAACCAAAGCCTTCTTCTCCTCATTTATCTGTACAATGCCTGATGAAATATTAGCAAACTTTCCATCGGTTATGGCAATTTCACAATGCCTTCTTGGTCTTCCATTCACTCTCTTTTCATCAATTTTCTTTCTTGAACCCACCCTTCTCCCCAGAGTTTCTAAGTTTTGGCCTGAAGTTTTTTTTCCTGGGCTTACTATGGCTCTAACCAATATCTGTTGCAAAGGAGGAAAAGAAATTGCCTGTGGATCTCCTGATCATGCTTCTTATACAGGAGAAGCAATATGTAACCAAAATTGTGGTGCAAATGAAGCTGCTGCTACTGCCTTCAGTTTATTTTTGATGAAGGCACCTTTCCATGTTTTGTTCCCTGCCATTATGTGCATTGACGGTCCTTATTCGTTAGAGCCCTCAAAGATACATGACCTGCTTTTGGCTAAACTATCGGACTGTGCAATTGATTACCACCTTATTTCCTATTTGCGCCTTGTATTATTTTGGCTTTATCAGATACGGTCATCTTGTACAGTTGAACAATTAGTCGGTTTCCAACAACTTTCTGAGATTTGCTCAGTTCTGGTGAAGAACTTATTATCTCAACTATTGGTGGCTGATTCTGATTCCCTCAGAACCTCCAGTGTAAATCTATCAAGTCATGATATTCAAAAGGTGGCTGAAACTATCTTTTATCATCCTGCAATAACTACATCGTTATCCTGCCCTTTGGAGTGTAGTGAAGACTTACCAGAGGGTAATCTACCAGATAACGTGGATGCTCTCATCAATTTATCGAGGGGGAAAGTTCATAGATTAGACCATCATGCCTTGGATATATTGGCAACAACTTGCAAGTACTTGTTTTCTCTGTGCAATGACAACCAATTTACACTTGAAGTAGAAGATGGGGATGGTACAAAGTTTGTGAAAGCATTCAACGTCTTGGTTCATAAGCTCTTTCAGGAAGTCAAGGTCAAATTTGATCACAGCATTAGAAGTAACAATTGTATGGCTTTCCTCCCAACATTCTATGCTTTGCATGCTTTGAGTGGTTTTATATCTCCATTTGAGCTTCTTGAATTAGTGCGTTGGATGTTTAGTAGAGTTGATACGGATGGCAACCAGAAATCTGCTATTTTTTTTGGATCTTGTATTGCTGGTGGTGCATTTAGAAATCTATCTAATTATTTGCAGCAGCCAAATACAAAGAGAAAGGCATTTGATTTGTTTTGGACGATGGAAGAAAACAATATTAATAGCGACATTGTTGAAGAAATCTATATTAAGATATCAAAGCTTGCCTTTCTTTTGAAATCAGAAGTTGTAGATCATTGCTTGCTGGAAGCTATGAATGTGGTATACAGGAAGAAATGTATGCAAAAGTGTAATTTTCATCCATTAATAATAGTGATGTCGAGAGTTATAGCAACCACTCCAATAGAAATGCTTTCCCATTGCATTTACAGAACAAGCAAGATGAAAGCTAGATTGTTGTCTCTTCTTATTGATCTGAGCTCTATGCATTTGTCTACCTTTGGGCACTTACTTTTTGGTACTCTAGATACTAGTTGTCTACATAATGGCAATGTGACATCTGACCTAGCCCTTTCAGATGACGACTATATGATGATTCTGCCTTCTGCTGTGTCCTACATGAATTCAGTTTTAATGAAATTTGGAGAGCCGTGCTACAGGCATTTTAGAAATATTCCTTCCTTTTATTCAAAGATTATTTTGGATGGTCTCCTTCATTGGAAGAATTTTGTTTCTCGTGATGTGTTTCATGAAGATTTTGGAGAGGTTTTGCCGTCATCTGCTGAAGAAGTTCTTAACCTCATTAATGATAGTCTTCTGGGCAAAGCGATTTGTATGCTGCGCTATCACTATGCTTTGAATGCAGATTCCGTAGAAAGGAAAGACCGATTAAAGCATTTCAGTTCCATTTTCCCAGCTTCTGTGGGACACGAGGAGCTGATAGACTGGGATGTTGGTGGATTGGGTTCTCACTCTTTCAATGAAACATTAAACCTTGTAAATAAAATTCATGCAAAGGTCTCGTTTTGTAGGATGCTGTTATTCCCCAAAGATACTCAGGTTCACTCTCTTTCAATTGAAGCCAGTGGGAACCTGAAAGATGTTCCTCTGGATATGGTAGATGACAAAGGTAACTCTTCACAAATGCAGTTTTTGAACATCTTGTTGGATATGTGGCAATGCATTGTTAAAACAGTCCCTTCAGTCTTTCGTAGTTCTCAAAAGGGACACAGCACAGATAGTTCTTCATTGTGGAGATACCTGGAAGTTCTGATATTGAAAAGCATTCTTGAAGTGTCTAGAGAGATGCATGACAGTCTAATCAGAGTACAATCTATACCCTTCCTAGAGAAATTGATGAAACCAGCTCTTCTGCATAGGTTTGACGATCCAACAACTTTGCAAATGCTGCGTGATCTTTTGACTTTTCTATCTGGGGGGAAATTTTCGCGTGTTCCCTATCTTCAGCTTTTACTTGCACACTCTCAATTTGTGCCTACTATTTGTTCACTATCCAAACCATCACATTCTTCCCATGTGGGTGCCTTTTCTAGGCCTATGTCTAGCATTCTTAGATCACCTGTTTCCCTTACCTCAAAACAAAATGTAGATGATGGGGAATGCGATCTAGAAACATCTGAGCTGTACGTTAAACAGTTGGAGGTTATCAAATTGCTGCAGACACTCCTTCCTTTCAGGTTTCAACAGGATGGTTTTGACTTTGGAAAAGATTTAGGCATTGATCTTAGGGAAGTTCATTTACTACTTTTGTCTTCTTATGGTGCAACACTTTCTGAAATTGATGTGGAGATATACAATCTGATGCGCACAATTGAGTGTATTGATGGTTTGGAGCATGTCCGATTTGCTGGAATGGATCACCTTTGGGGCAGTGCTGCGTTGAAGATAGAAAAGGAACGGAATCTGGAGCAGAGTTTGTCTTATGATACAATCAATGATGCTGAAGCAGTAAAAGAACACTGTAGAAATCAAGTTAGAGAAAATCTTGCGATTGACCCCAAAATATGCGCATCCACGGTGCTATATTTTCCCTACCAGATAGTGGCATCTGATGAGCTATTATCCTTGAACAAGTTTCAAACAGATCCTGTTGATCGTATGCATGTGTTATGCTCCCCCGATGTTGACGCTAAAGAAAGATATAATCCTATTTTCATCTTGCGCTTCTCTATTCATTGTCTTTCAGAAGGTTACATTGAACCCTTGGAGTTTGCTGGTTTAGGCTTACTTGCTATTGCCTTTATGAGTATTTCATCACCTGATGACAAGATAAGAAGTTTGGGTTATGAAACTCTTGAAACATTGCAGTACAAGTTGAAGACGTGTCAAAAGAAGAAGGGTGTCACGCAAGTTAAGCTTCTGTTGCTTTATGTGGAAAATGGTATACAACAAATAGGGCAGAGAATCTCTTCTGTAAATGCTATTTTTGCTGCAGAGACATCCCTTATATTATTAGATACTTCACATGAACATTATGCAACTTTACTAACGCTATTGAAGAGATCGTCTGCATTGAACACGAAGAATGTACCTTTCTTTAGCAATTTTTTCTGGAGTTCCTCTATTAACTTCAGATCAGAAAGGTTGTGGATACTGCGGTTATTATATGTGGGGCTGAACTTTGACGATGATTCACATGTTTATATCAAGAATTCCATTTTTGAGACTCTGTTGAGTTTCTATGTTTCTCCCCTTTCAGATAAGGAGTCCAAGGAACTAATTCTTCAGGTAGTGAAGAAGTCAGTTAAATTGCATAAGTTGGCTCGTCATCTAGTTGAAAAATGTGGTCTGTTTCCATGGTTATCATCTCTTCTCTCGATATCCAGTGAAAGTCGTCTCGAAGATGAAACTTTATGCTTGTTGCAGTTGAGTGTGGTATCAGAGGTGGTCAATGATGTTGTTTCTTCAAGAAACATTACTGAATGGTTGCAGAACATTGCCCTCGAGCAGCTCATGGAGTTCACATCTCATCTCTACAAATTTCTTGCGACTGATGTGACTTTGATAACAGAAAATGTTGCAGTCGTCAATCAAATTCTTAAAACAATAATATCTACATTCAAGGTATCCCAAAAGAGGACGATATATCAGCCACATTTTGTTGTATCATTCGATGGTTTGTACAGAATATATAAGGCGGTCAAGGTCTACAATGATGCAAGATCATGTACTACTGTAGAGTTTGGCCTTAAAGCCATTCTTATGAGTGCCCCTCCAGCTTCCATCCTTTATGTGAGTGGTGAAAAGCTGTCAAGTTTTATCATGTGGGCAATTTCCAGTGCTGTAGCAGCAGACTCTGCAACTATGCTTCATTCCAATGAATCTCATCAATGTTTCACTACTATTCCAGAGGAAAAAGAGGTGTTTAAGAATTCTTTGATTTCAAAACTATTGCGTTGGCTAACTGCAAGTGTAATTCTTGGGAAGCTTGACTGGACATTCAGTGACGTGGATCCTGAGTTCTCAAAAAGTTTGAATTTAAAAAGTTTGCAGTCTTTAATAACTCATGCTGACAAGGCATGTGGAGAAAGGGGCCGAAACAGATATGGTTGTGAGGAGATCTTGGCATCAGCAATTGTCTACCTTCAACAGCTCTCTGGAACAAATTACGAAATGCTACCATCTGTCACTGCCGCCCTTAGTCTTCTCCTTTCCAATGCCGCCATTTATGCAGGTTTCTTGCATGATAAGGAAACTGTCCAATCACTTTGGCGGAAGATACGTTGCCCTAATGAAGCTAATCCTGCCTGGAGATGGTCATTTGACCAGCCATGGAAGGATCCGATGTTGGAAGTCACTGATTCCCAGAAGATGGAGGAACTCCATGCTTGTGAATCACTTTTAGTTATATTTTCAAATCTGCTTGGAAAACAATCATCAGAATTTCAGGTTTCATCAACACAGGATGTAGATAGATTTGGTGTATTTGAGTGGGAAAAAAGTATCATAACATCTCAGAAATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NopRA1 Npa1

Protein Analysis

1819

Amino Acids

204.73

Weight (kDa)

5.97

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NopRA1 PF16201 1240 - 1430 1.3e-44 Nucleolar pre-ribosomal-associated protein 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 3296, 3499
Acc36I ACCTGC 2 cut(s) 873, 5153
AccB1I GGYRCC 2 cut(s) 787, 3011
AccB7I CCANNNNNTGG 2 cut(s) 3532, 5302
AccI GTMKAC 6 cut(s) 1794, 1964, 2008, 3874, 4638, 5070
AccII CGCG 1 cut(s) 2920
AciI CCGC 5 cut(s) 4087, 4628, 5124, 5151, 5203
AcuI CTGAAG 8 cut(s) 633, 751, 2274, 2655, 2918, 3453, 4045, 4199
AfeI AGCGCT 1 cut(s) 384
AfiI CCNNNNNNNGG 7 cut(s) 871, 2346, 3021, 3532, 4566, 5244, 5302
AflIII ACRYGT 3 cut(s) 135, 3812, 4126
AhlI ACTAGT 1 cut(s) 2000
AjiI CACGTC 2 cut(s) 3813, 4939
AjnI CCWGG 3 cut(s) 625, 2730, 5237
AjuI GAANNNNNNNTTGG 4 cut(s) 437, 469, 2618, 2650
AloI GAACNNNNNNTCC 2 cut(s) 4934, 4966
Alw21I GWGCWC 1 cut(s) 1952
Alw26I GTCTC 7 cut(s) 214, 1935, 2183, 2494, 3920, 4148, 4331
AlwNI CAGNNNCTG 3 cut(s) 2390, 3578, 4787
Ama87I CYCGRG 1 cut(s) 4433
Aor51HI AGCGCT 1 cut(s) 384
AoxI GGCC 6 cut(s) 36, 272, 608, 3023, 4675, 5023
AseI ATTAAT 3 cut(s) 1689, 1835, 2274
Asp700I GAANNNNTTC 4 cut(s) 1367, 2259, 3898, 4209
AspLEI GCGC 6 cut(s) 385, 924, 2313, 3297, 3500, 3654
AspS9I GGNCC 3 cut(s) 37, 830, 5023
AsuHPI GGTGA 8 cut(s) 21, 239, 437, 1030, 3039, 3341, 3738, 4742
AvaI CYCGRG 1 cut(s) 4433
AvaII GGWCC 1 cut(s) 830
AxyI CCTNAGG 1 cut(s) 33
BaeGI GKGCMC 2 cut(s) 1977, 4702
BaeI ACNNNNGTAYC 4 cut(s) 2514, 2547, 4073, 4106
BamHI GGATCC 2 cut(s) 4942, 5269
BanI GGYRCC 2 cut(s) 787, 3011
BanII GRGCYC 2 cut(s) 849, 1952
BarI GAAGNNNNNNTAC 2 cut(s) 3213, 3245
BauI CACGAG 2 cut(s) 2205, 2399
BbsI GAAGAC 8 cut(s) 122, 406, 530, 1182, 2276, 3234, 3815, 5126
Bbv12I GWGCWC 1 cut(s) 1952
BceAI ACGGC 3 cut(s) 259, 2104, 2227
BcgI CGANNNNNNTGC 4 cut(s) 2287, 2321, 2472, 2506
BciT130I CCWGG 3 cut(s) 627, 2732, 5239
BciVI GTATCC 2 cut(s) 4074, 4567
BclI TGATCA 2 cut(s) 694, 1417
BcoDI GTCTC 7 cut(s) 214, 1935, 2183, 2494, 3920, 4148, 4331
BcuI ACTAGT 1 cut(s) 2000
BfmI CTRYAG 7 cut(s) 18, 2125, 3146, 3451, 3921, 4665, 4773
BfoI RGCGCY 1 cut(s) 386
BfuAI ACCTGC 2 cut(s) 873, 5153
BfuI GTATCC 2 cut(s) 4074, 4567
BglII AGATCT 1 cut(s) 5049
BmcAI AGTACT 1 cut(s) 1292
Bme1390I CCNGG 3 cut(s) 627, 2732, 5239
Bme18I GGWCC 1 cut(s) 830
BmeT110I CYCGRG 1 cut(s) 4433
BmgBI CACGTC 2 cut(s) 3813, 4939
BmgT120I GGNCC 3 cut(s) 37, 830, 5023
BmiI GGNNCC 7 cut(s) 39, 789, 2561, 3013, 4944, 5024, 5271
BmrFI CCNGG 3 cut(s) 627, 2732, 5239
BmrI ACTGGG 1 cut(s) 2425
BmuI ACTGGG 1 cut(s) 2425
BpiI GAAGAC 8 cut(s) 122, 406, 530, 1182, 2276, 3234, 3815, 5126
BplI GAGNNNNNCTC 4 cut(s) 992, 1024, 4687, 4719
BpmI CTGGAG 5 cut(s) 1057, 3416, 4063, 4689, 5260
BpuEI CTTGAG 1 cut(s) 407
BsaAI YACGTR 1 cut(s) 136
BsaI GGTCTC 2 cut(s) 2183, 2494
BsaJI CCNNGG 7 cut(s) 626, 1263, 3504, 3693, 4200, 4286, 5261
BsaXI ACNNNNNCTCC 2 cut(s) 409, 439
Bsc4I CCNNNNNNNGG 7 cut(s) 871, 2346, 3021, 3532, 4566, 5244, 5302
Bse1I ACTGG 6 cut(s) 1074, 2420, 2553, 4314, 4767, 4928
Bse21I CCTNAGG 1 cut(s) 33
Bse3DI GCAATG 7 cut(s) 1315, 1765, 1888, 2026, 2654, 3791, 4425
BseBI CCWGG 3 cut(s) 627, 2732, 5239
BseDI CCNNGG 7 cut(s) 626, 1263, 3504, 3693, 4200, 4286, 5261
BseLI CCNNNNNNNGG 7 cut(s) 871, 2346, 3021, 3532, 4566, 5244, 5302
BseMI GCAATG 7 cut(s) 1315, 1765, 1888, 2026, 2654, 3791, 4425
BseNI ACTGG 6 cut(s) 1074, 2420, 2553, 4314, 4767, 4928
BseRI GAGGAG 3 cut(s) 448, 2417, 5060
BseSI GKGCMC 2 cut(s) 1977, 4702
BseYI CCCAGC 1 cut(s) 2383
Bsh1236I CGCG 1 cut(s) 2920
BshFI GGCC 6 cut(s) 38, 274, 610, 3025, 4677, 5025
BshNI GGYRCC 2 cut(s) 787, 3011
BsiHKAI GWGCWC 1 cut(s) 1952
BsiHKCI CYCGRG 1 cut(s) 4433
BslFI GGGAC 4 cut(s) 109, 2409, 2651, 2709
BslI CCNNNNNNNGG 7 cut(s) 871, 2346, 3021, 3532, 4566, 5244, 5302
BsmAI GTCTC 7 cut(s) 214, 1935, 2183, 2494, 3920, 4148, 4331
BsmBI CGTCTC 1 cut(s) 4331
BsmFI GGGAC 4 cut(s) 109, 2409, 2651, 2709
BsmI GAATGC 5 cut(s) 1367, 2335, 2754, 3036, 3095
BsnI GGCC 6 cut(s) 38, 274, 610, 3025, 4677, 5025
Bso31I GGTCTC 2 cut(s) 2183, 2494
BsoBI CYCGRG 1 cut(s) 4433
Bsp1286I GDGCHC 4 cut(s) 849, 1952, 1977, 4702
Bsp1407I TGTACA 3 cut(s) 470, 962, 4611
Bsp19I CCATGG 2 cut(s) 4286, 5261
BspACI CCGC 5 cut(s) 4087, 4628, 5124, 5151, 5203
BspANI GGCC 6 cut(s) 38, 274, 610, 3025, 4677, 5025
BspFNI CGCG 1 cut(s) 2920
BspHI TCATGA 2 cut(s) 1093, 2218
BspLI GGNNCC 7 cut(s) 39, 789, 2561, 3013, 4944, 5024, 5271
BspMAI CTGCAG 3 cut(s) 22, 3150, 3925
BspMI ACCTGC 2 cut(s) 873, 5153
BspQI GCTCTTC 1 cut(s) 2844
BspT107I GGYRCC 2 cut(s) 787, 3011
BspTNI GGTCTC 2 cut(s) 2183, 2494
BsrDI GCAATG 7 cut(s) 1315, 1765, 1888, 2026, 2654, 3791, 4425
BsrGI TGTACA 3 cut(s) 470, 962, 4611
BsrI ACTGG 6 cut(s) 1074, 2420, 2553, 4314, 4767, 4928
BssECI CCNNGG 7 cut(s) 626, 1263, 3504, 3693, 4200, 4286, 5261
BssNAI GTATAC 2 cut(s) 1795, 3875
BssSI CACGAG 2 cut(s) 2205, 2399
BssT1I CCWWGG 5 cut(s) 1263, 3693, 4200, 4286, 5261
Bst1107I GTATAC 2 cut(s) 1795, 3875
Bst2BI CACGAG 2 cut(s) 2205, 2399
Bst2UI CCWGG 3 cut(s) 627, 2732, 5239
Bst6I CTCTTC 6 cut(s) 1938, 2611, 2844, 3904, 3983, 4305
BstAPI GCANNNNNTGC 2 cut(s) 2878, 4787
BstAUI TGTACA 3 cut(s) 470, 962, 4611
BstBAI YACGTR 1 cut(s) 136
BstC8I GCNNGC 3 cut(s) 1476, 1734, 1772
BstDSI CCRYGG 3 cut(s) 3504, 4286, 5261
BstENI CCTNNNNNAGG 1 cut(s) 3019
BstFNI CGCG 1 cut(s) 2920
BstH2I RGCGCY 1 cut(s) 386
BstHHI GCGC 6 cut(s) 385, 924, 2313, 3297, 3500, 3654
BstMAI GTCTC 7 cut(s) 214, 1935, 2183, 2494, 3920, 4148, 4331
BstNI CCWGG 3 cut(s) 627, 2732, 5239
BstNSI RCATGY 5 cut(s) 1478, 3329, 3596, 4130, 5013
BstSCI CCNGG 3 cut(s) 625, 2730, 5237
BstSFI CTRYAG 7 cut(s) 18, 2125, 3146, 3451, 3921, 4665, 4773
BstSLI GKGCMC 2 cut(s) 1977, 4702
BstUI CGCG 1 cut(s) 2920
BstV2I GAAGAC 8 cut(s) 122, 406, 530, 1182, 2276, 3234, 3815, 5126
BstX2I RGATCY 7 cut(s) 89, 686, 1580, 3574, 4942, 5049, 5269
BstXI CCANNNNNNTGG 1 cut(s) 737
BstYI RGATCY 7 cut(s) 89, 686, 1580, 3574, 4942, 5049, 5269
BstZ17I GTATAC 2 cut(s) 1795, 3875
Bsu36I CCTNAGG 1 cut(s) 33
BsuI GTATCC 2 cut(s) 4074, 4567
BsuRI GGCC 6 cut(s) 38, 274, 610, 3025, 4677, 5025
BtgI CCRYGG 3 cut(s) 3504, 4286, 5261
BtrI CACGTC 2 cut(s) 3813, 4939
BtsI GCAGTG 2 cut(s) 3367, 5118
BveI ACCTGC 2 cut(s) 873, 5153
Cac8I GCNNGC 3 cut(s) 1476, 1734, 1772
CaiI CAGNNNCTG 3 cut(s) 2390, 3578, 4787
CciI TCATGA 2 cut(s) 1093, 2218
CfoI GCGC 6 cut(s) 385, 924, 2313, 3297, 3500, 3654
Cfr13I GGNCC 3 cut(s) 37, 830, 5023
CseI GACGC 1 cut(s) 3626
CspCI CAANNNNNGTGG 2 cut(s) 4993, 5028
DraI TTTAAA 1 cut(s) 4971
Eam1104I CTCTTC 6 cut(s) 1938, 2611, 2844, 3904, 3983, 4305
EarI CTCTTC 6 cut(s) 1938, 2611, 2844, 3904, 3983, 4305
EciI GGCGGA 1 cut(s) 5218
Ecl136II GAGCTC 1 cut(s) 1950
Eco130I CCWWGG 5 cut(s) 1263, 3693, 4200, 4286, 5261
Eco147I AGGCCT 1 cut(s) 3025
Eco24I GRGCYC 2 cut(s) 849, 1952
Eco31I GGTCTC 2 cut(s) 2183, 2494
Eco32I GATATC 3 cut(s) 126, 1725, 4311
Eco47I GGWCC 1 cut(s) 830
Eco47III AGCGCT 1 cut(s) 384
Eco53kI GAGCTC 1 cut(s) 1950
Eco57I CTGAAG 8 cut(s) 633, 751, 2274, 2655, 2918, 3453, 4045, 4199
Eco81I CCTNAGG 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 4433
EcoICRI GAGCTC 1 cut(s) 1950
EcoNI CCTNNNNNAGG 1 cut(s) 3019
EcoO109I RGGNCCY 1 cut(s) 37
EcoRI GAATTC 3 cut(s) 2092, 4141, 4861
EcoRII CCWGG 3 cut(s) 625, 2730, 5237
EcoRV GATATC 3 cut(s) 126, 1725, 4311
EcoT14I CCWWGG 5 cut(s) 1263, 3693, 4200, 4286, 5261
EcoT22I ATGCAT 4 cut(s) 1959, 2654, 2781, 3594
EcoT38I GRGCYC 2 cut(s) 849, 1952
ErhI CCWWGG 5 cut(s) 1263, 3693, 4200, 4286, 5261
Esp3I CGTCTC 1 cut(s) 4331
FalI AAGNNNNNCTT 8 cut(s) 1721, 1753, 2247, 2279, 3831, 3863, 4674, 4706
FaqI GGGAC 4 cut(s) 109, 2409, 2651, 2709
FbaI TGATCA 2 cut(s) 694, 1417
FblI GTMKAC 6 cut(s) 1794, 1964, 2008, 3874, 4638, 5070
FriOI GRGCYC 2 cut(s) 849, 1952
FspAI RTGCGCAY 2 cut(s) 3296, 3499
FspI TGCGCA 2 cut(s) 3296, 3499
GlaI GCGC 6 cut(s) 384, 923, 2312, 3296, 3499, 3653
GsaI CCCAGC 1 cut(s) 2387
GsuI CTGGAG 5 cut(s) 1057, 3416, 4063, 4689, 5260
HaeII RGCGCY 1 cut(s) 386
HaeIII GGCC 6 cut(s) 38, 274, 610, 3025, 4677, 5025
HgaI GACGC 1 cut(s) 3626
HhaI GCGC 6 cut(s) 385, 924, 2313, 3297, 3500, 3654
Hin6I GCGC 6 cut(s) 383, 922, 2311, 3295, 3498, 3652
HinP1I GCGC 6 cut(s) 383, 922, 2311, 3295, 3498, 3652
HincII GTYRAC 1 cut(s) 3616
HindII GTYRAC 1 cut(s) 3616
HindIII AAGCTT 3 cut(s) 1730, 3845, 4916
HphI GGTGA 8 cut(s) 21, 239, 437, 1030, 3039, 3341, 3738, 4742
HpyCH4IV ACGT 8 cut(s) 104, 135, 1206, 1374, 3117, 3812, 4938, 5212
HpySE526I ACGT 8 cut(s) 104, 135, 1206, 1374, 3117, 3812, 4938, 5212
HspAI GCGC 6 cut(s) 383, 922, 2311, 3295, 3498, 3652
Ksp22I TGATCA 2 cut(s) 694, 1417
LguI GCTCTTC 1 cut(s) 2844
LmnI GCTCC 4 cut(s) 2404, 3322, 3397, 3608
MaeII ACGT 8 cut(s) 104, 135, 1206, 1374, 3117, 3812, 4938, 5212
MfeI CAATTG 5 cut(s) 894, 1438, 2544, 3300, 5064
MflI RGATCY 7 cut(s) 89, 686, 1580, 3574, 4942, 5049, 5269
MhlI GDGCHC 4 cut(s) 849, 1952, 1977, 4702
MlyI GAGTC 3 cut(s) 4150, 4205, 4778
MmeI TCCRAC 6 cut(s) 1012, 1505, 2616, 2885, 3108, 5259
Mph1103I ATGCAT 4 cut(s) 1959, 2654, 2781, 3594
MroXI GAANNNNTTC 4 cut(s) 1367, 2259, 3898, 4209
MslI CAYNNNNRTG 4 cut(s) 3009, 4691, 4806, 5319
MspR9I CCNGG 3 cut(s) 627, 2732, 5239
MunI CAATTG 5 cut(s) 894, 1438, 2544, 3300, 5064
Mva1269I GAATGC 5 cut(s) 1367, 2335, 2754, 3036, 3095
MvaI CCWGG 3 cut(s) 627, 2732, 5239
MvnI CGCG 1 cut(s) 2920
NcoI CCATGG 2 cut(s) 4286, 5261
NlaIV GGNNCC 7 cut(s) 39, 789, 2561, 3013, 4944, 5024, 5271
NmuCI GTSAC 8 cut(s) 27, 227, 2023, 3832, 4486, 4934, 5116, 5284
NsbI TGCGCA 2 cut(s) 3296, 3499
NsiI ATGCAT 4 cut(s) 1959, 2654, 2781, 3594
NspI RCATGY 5 cut(s) 1478, 3329, 3596, 4130, 5013
PaeI GCATGC 1 cut(s) 1478
PaeR7I CTCGAG 1 cut(s) 4433
PagI TCATGA 2 cut(s) 1093, 2218
PceI AGGCCT 1 cut(s) 3025
PciI ACATGT 1 cut(s) 4126
PciSI GCTCTTC 1 cut(s) 2844
PctI GAATGC 5 cut(s) 1367, 2335, 2754, 3036, 3095
PdmI GAANNNNTTC 4 cut(s) 1367, 2259, 3898, 4209
PflMI CCANNNNNTGG 2 cut(s) 3532, 5302
PleI GAGTC 3 cut(s) 4150, 4204, 4778
PpsI GAGTC 3 cut(s) 4150, 4204, 4778
Ppu21I YACGTR 1 cut(s) 136
PscI ACATGT 1 cut(s) 4126
PshBI ATTAAT 3 cut(s) 1689, 1835, 2274
Psp124BI GAGCTC 1 cut(s) 1952
Psp6I CCWGG 3 cut(s) 625, 2730, 5237
PspFI CCCAGC 1 cut(s) 2383
PspGI CCWGG 3 cut(s) 625, 2730, 5237
PspN4I GGNNCC 7 cut(s) 39, 789, 2561, 3013, 4944, 5024, 5271
PspPI GGNCC 3 cut(s) 37, 830, 5023
PspXI VCTCGAGB 1 cut(s) 4433
PstI CTGCAG 3 cut(s) 22, 3150, 3925
PstNI CAGNNNCTG 3 cut(s) 2390, 3578, 4787
PsuI RGATCY 7 cut(s) 89, 686, 1580, 3574, 4942, 5049, 5269
RseI CAYNNNNRTG 4 cut(s) 3009, 4691, 4806, 5319
SacI GAGCTC 1 cut(s) 1952
SapI GCTCTTC 1 cut(s) 2844
Sau96I GGNCC 3 cut(s) 37, 830, 5023
ScaI AGTACT 1 cut(s) 1292
SchI GAGTC 3 cut(s) 4150, 4205, 4778
ScrFI CCNGG 3 cut(s) 627, 2732, 5239
SduI GDGCHC 4 cut(s) 849, 1952, 1977, 4702
SfcI CTRYAG 7 cut(s) 18, 2125, 3146, 3451, 3921, 4665, 4773
Sfr274I CTCGAG 1 cut(s) 4433
SinI GGWCC 1 cut(s) 830
SlaI CTCGAG 1 cut(s) 4433
SmiMI CAYNNNNRTG 4 cut(s) 3009, 4691, 4806, 5319
SmlI CTYRAG 2 cut(s) 386, 4433
SmoI CTYRAG 2 cut(s) 386, 4433
SpeI ACTAGT 1 cut(s) 2000
SphI GCATGC 1 cut(s) 1478
SseBI AGGCCT 1 cut(s) 3025
SsiI CCGC 5 cut(s) 4087, 4628, 5124, 5151, 5203
SspI AATATT 3 cut(s) 489, 1687, 2143
SstI GAGCTC 1 cut(s) 1952
StuI AGGCCT 1 cut(s) 3025
StyD4I CCNGG 3 cut(s) 625, 2730, 5237
StyI CCWWGG 5 cut(s) 1263, 3693, 4200, 4286, 5261
TaiI ACGT 8 cut(s) 107, 138, 1209, 1377, 3120, 3815, 4941, 5215
TaqI TCGA 6 cut(s) 1229, 1850, 4307, 4329, 4434, 4602
TaqII GACCGA 1 cut(s) 2370
TatI WGTACW 7 cut(s) 470, 962, 1290, 2797, 3798, 4611, 4658
TauI GCSGC 2 cut(s) 5126, 5153
TseFI GTSAC 8 cut(s) 27, 227, 2023, 3832, 4486, 4934, 5116, 5284
Tsp45I GTSAC 8 cut(s) 27, 227, 2023, 3832, 4486, 4934, 5116, 5284
TspGWI ACGGA 3 cut(s) 1562, 2329, 3403
Van91I CCANNNNNTGG 2 cut(s) 3532, 5302
VpaK11BI GGWCC 1 cut(s) 830
VspI ATTAAT 3 cut(s) 1689, 1835, 2274
XagI CCTNNNNNAGG 1 cut(s) 3019
XbaI TCTAGA 3 cut(s) 1993, 2768, 3097
XceI RCATGY 5 cut(s) 1478, 3329, 3596, 4130, 5013
XhoI CTCGAG 1 cut(s) 4433
XmiI GTMKAC 6 cut(s) 1794, 1964, 2008, 3874, 4638, 5070
XmnI GAANNNNTTC 4 cut(s) 1367, 2259, 3898, 4209
ZrmI AGTACT 1 cut(s) 1292
Zsp2I ATGCAT 4 cut(s) 1959, 2654, 2781, 3594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.