Nucleolar pre-ribosomal-associated protein 1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G72270 AT4G27010 AT4G27010 |
| fragaria_vesca | FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 |
| malus_domestica | MD03G1202300.v1.1 |
| prunus_persica | Prupe.4G211600_v2.0.a1 Prupe.4G211600_v2.0.a1 Prupe.4G211600_v2.0.a1 |
| pyrus_communis | pycom03g15370 pycom03g15380 pycom03g15390 |
| rosa_chinensis | RchiOBHm_Chr5g0039261 |
| rosa_laevigata | RLG00000033900 RLG00000033902 |
| rosa_multiflora | Rmu_sc0000533.1_g000002 Rmu_sc0000533.1_g000003 Rmu_ssc0000410.1_g000046 |
| rosa_roxburghii | Rroxscaffold_1G00040450 Rroxscaffold_1G00041880 |
| rosa_rugosa | Rorug05G0177300 |
| rosa_samantha | Rh5AG264000 Rh5BG268900 Rh5CG301900 Rh5DG276600 |
| rosa_wichuraiana | Rw5G024750 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 188 |
| AatII | GACGTC | 1 cut(s) | 4103 |
| Acc16I | TGCGCA | 1 cut(s) | 5549 |
| Acc36I | ACCTGC | 2 cut(s) | 3126, 7406 |
| AccB1I | GGYRCC | 2 cut(s) | 3040, 5264 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 959, 5785, 7555 |
| AccBSI | CCGCTC | 1 cut(s) | 1281 |
| AccI | GTMKAC | 6 cut(s) | 1483, 4047, 4217, 4261, 6127, 6891 |
| AccII | CGCG | 4 cut(s) | 272, 412, 5173, 5753 |
| AciI | CCGC | 9 cut(s) | 412, 485, 736, 1006, 1206, 1279, 1614, 6340, 7456 |
| AcyI | GRCGYC | 2 cut(s) | 533, 4100 |
| AdeI | CACNNNGTG | 1 cut(s) | 1994 |
| AfeI | AGCGCT | 1 cut(s) | 2637 |
| AflII | CTTAAG | 2 cut(s) | 95, 1031 |
| AflIII | ACRYGT | 4 cut(s) | 1405, 2388, 6065, 6379 |
| AhlI | ACTAGT | 1 cut(s) | 4253 |
| AjiI | CACGTC | 1 cut(s) | 7192 |
| AjnI | CCWGG | 4 cut(s) | 2133, 2878, 4983, 7490 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2690, 2722 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 7187, 7219 |
| Alw21I | GWGCWC | 5 cut(s) | 257, 1755, 1805, 1868, 4205 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 4643, 5831, 7040 |
| Ama87I | CYCGRG | 1 cut(s) | 6686 |
| Aor51HI | AGCGCT | 1 cut(s) | 2637 |
| AoxI | GGCC | 8 cut(s) | 602, 961, 2289, 2525, 2861, 5276, 6928, 7276 |
| AseI | ATTAAT | 3 cut(s) | 3942, 4088, 4527 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 2119, 2213, 3620, 4512, 6151, 6462 |
| AspS9I | GGNCC | 4 cut(s) | 1628, 2290, 3083, 7276 |
| AsuC2I | CCSGG | 4 cut(s) | 297, 684, 2100, 2206 |
| AsuII | TTCGAA | 1 cut(s) | 1447 |
| AvaI | CYCGRG | 1 cut(s) | 6686 |
| AvaII | GGWCC | 2 cut(s) | 1628, 3083 |
| AxyI | CCTNAGG | 1 cut(s) | 2286 |
| BaeGI | GKGCMC | 2 cut(s) | 4230, 6955 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 3194, 3227, 4767, 4800, 6326, 6359 |
| BamHI | GGATCC | 2 cut(s) | 7195, 7522 |
| BanI | GGYRCC | 2 cut(s) | 3040, 5264 |
| BanII | GRGCYC | 3 cut(s) | 1212, 3102, 4205 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 5466, 5498 |
| BauI | CACGAG | 2 cut(s) | 4458, 4652 |
| Bbv12I | GWGCWC | 5 cut(s) | 257, 1755, 1805, 1868, 4205 |
| BceAI | ACGGC | 5 cut(s) | 722, 2177, 2512, 4357, 4480 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 4540, 4574, 4725, 4759 |
| BciT130I | CCWGG | 4 cut(s) | 2135, 2880, 4985, 7492 |
| BciVI | GTATCC | 5 cut(s) | 792, 1272, 4345, 6327, 6820 |
| BclI | TGATCA | 3 cut(s) | 2947, 3670, 5836 |
| BcnI | CCSGG | 4 cut(s) | 297, 684, 2100, 2206 |
| BcuI | ACTAGT | 1 cut(s) | 4253 |
| BfoI | RGCGCY | 4 cut(s) | 478, 491, 683, 2639 |
| BfrI | CTTAAG | 2 cut(s) | 95, 1031 |
| BfuAI | ACCTGC | 2 cut(s) | 3126, 7406 |
| BfuI | GTATCC | 5 cut(s) | 792, 1272, 4345, 6327, 6820 |
| BglII | AGATCT | 3 cut(s) | 1525, 1675, 7302 |
| BlpI | GCTNAGC | 3 cut(s) | 16, 471, 2607 |
| BmcAI | AGTACT | 2 cut(s) | 2044, 3545 |
| Bme1390I | CCNGG | 8 cut(s) | 297, 684, 2100, 2135, 2206, 2880, 4985, 7492 |
| Bme18I | GGWCC | 2 cut(s) | 1628, 3083 |
| BmeT110I | CYCGRG | 1 cut(s) | 6686 |
| BmgBI | CACGTC | 1 cut(s) | 7192 |
| BmgT120I | GGNCC | 4 cut(s) | 1628, 2290, 3083, 7276 |
| BmiI | GGNNCC | 9 cut(s) | 822, 1211, 2292, 3042, 4814, 5266, 7197, 7277, 7524 |
| BmrFI | CCNGG | 8 cut(s) | 297, 684, 2100, 2135, 2206, 2880, 4985, 7492 |
| BmrI | ACTGGG | 1 cut(s) | 4678 |
| BmuI | ACTGGG | 1 cut(s) | 4678 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1078, 1110, 3245, 3277, 6940, 6972 |
| BpmI | CTGGAG | 8 cut(s) | 231, 689, 1550, 3310, 5669, 6316, 6942, 7513 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1829 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 16, 471, 2607 |
| Bpu14I | TTCGAA | 1 cut(s) | 1447 |
| BpuEI | CTTGAG | 6 cut(s) | 1343, 1406, 1492, 1703, 2660, 6425 |
| BpuMI | CCSGG | 4 cut(s) | 297, 684, 2100, 2206 |
| BsaAI | YACGTR | 2 cut(s) | 2389, 7354 |
| BsaHI | GRCGYC | 2 cut(s) | 533, 4100 |
| BsaI | GGTCTC | 4 cut(s) | 1081, 1908, 4436, 4747 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2662, 2692 |
| Bse118I | RCCGGY | 1 cut(s) | 170 |
| Bse1I | ACTGG | 9 cut(s) | 1270, 1795, 2050, 3327, 4673, 4806, 6567, 7020, 7181 |
| Bse21I | CCTNAGG | 1 cut(s) | 2286 |
| Bse3DI | GCAATG | 9 cut(s) | 663, 785, 3568, 4018, 4141, 4279, 4907, 6044, 6678 |
| BseBI | CCWGG | 4 cut(s) | 2135, 2880, 4985, 7492 |
| BseMI | GCAATG | 9 cut(s) | 663, 785, 3568, 4018, 4141, 4279, 4907, 6044, 6678 |
| BseNI | ACTGG | 9 cut(s) | 1270, 1795, 2050, 3327, 4673, 4806, 6567, 7020, 7181 |
| BseRI | GAGGAG | 4 cut(s) | 773, 2701, 4670, 4849 |
| BseSI | GKGCMC | 2 cut(s) | 4230, 6955 |
| BseYI | CCCAGC | 3 cut(s) | 742, 1213, 4636 |
| BsgI | GTGCAG | 3 cut(s) | 1122, 1259, 1698 |
| Bsh1236I | CGCG | 4 cut(s) | 272, 412, 5173, 5753 |
| Bsh1285I | CGRYCG | 3 cut(s) | 416, 1041, 3209 |
| BshFI | GGCC | 8 cut(s) | 604, 963, 2291, 2527, 2863, 5278, 6930, 7278 |
| BshNI | GGYRCC | 2 cut(s) | 3040, 5264 |
| BsiEI | CGRYCG | 3 cut(s) | 416, 1041, 3209 |
| BsiHKAI | GWGCWC | 5 cut(s) | 257, 1755, 1805, 1868, 4205 |
| BsiHKCI | CYCGRG | 1 cut(s) | 6686 |
| BsiSI | CCGG | 6 cut(s) | 171, 283, 296, 683, 2099, 2205 |
| BslFI | GGGAC | 3 cut(s) | 4662, 4904, 4962 |
| BsmBI | CGTCTC | 4 cut(s) | 1098, 4479, 6584, 7701 |
| BsmFI | GGGAC | 3 cut(s) | 4662, 4904, 4962 |
| BsmI | GAATGC | 4 cut(s) | 3620, 4588, 5289, 5348 |
| BsnI | GGCC | 8 cut(s) | 604, 963, 2291, 2527, 2863, 5278, 6930, 7278 |
| Bso31I | GGTCTC | 4 cut(s) | 1081, 1908, 4436, 4747 |
| BsoBI | CYCGRG | 1 cut(s) | 6686 |
| Bsp119I | TTCGAA | 1 cut(s) | 1447 |
| Bsp1286I | GDGCHC | 9 cut(s) | 257, 1212, 1755, 1805, 1868, 3102, 4205, 4230, 6955 |
| Bsp1407I | TGTACA | 3 cut(s) | 1944, 2723, 3215 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 16, 471, 2607 |
| Bsp19I | CCATGG | 2 cut(s) | 6539, 7514 |
| BspACI | CCGC | 9 cut(s) | 412, 485, 736, 1006, 1206, 1279, 1614, 6340, 7456 |
| BspANI | GGCC | 8 cut(s) | 604, 963, 2291, 2527, 2863, 5278, 6930, 7278 |
| BspFNI | CGCG | 4 cut(s) | 272, 412, 5173, 5753 |
| BspHI | TCATGA | 4 cut(s) | 106, 1248, 3346, 4471 |
| BspLI | GGNNCC | 9 cut(s) | 822, 1211, 2292, 3042, 4814, 5266, 7197, 7277, 7524 |
| BspMAI | CTGCAG | 6 cut(s) | 570, 913, 1863, 2316, 5403, 6178 |
| BspMI | ACCTGC | 2 cut(s) | 3126, 7406 |
| BspQI | GCTCTTC | 1 cut(s) | 5097 |
| BspT104I | TTCGAA | 1 cut(s) | 1447 |
| BspT107I | GGYRCC | 2 cut(s) | 3040, 5264 |
| BspTI | CTTAAG | 2 cut(s) | 95, 1031 |
| BspTNI | GGTCTC | 4 cut(s) | 1081, 1908, 4436, 4747 |
| BsrBI | CCGCTC | 1 cut(s) | 1281 |
| BsrDI | GCAATG | 9 cut(s) | 663, 785, 3568, 4018, 4141, 4279, 4907, 6044, 6678 |
| BsrFI | RCCGGY | 1 cut(s) | 170 |
| BsrGI | TGTACA | 3 cut(s) | 1944, 2723, 3215 |
| BsrI | ACTGG | 9 cut(s) | 1270, 1795, 2050, 3327, 4673, 4806, 6567, 7020, 7181 |
| BssAI | RCCGGY | 1 cut(s) | 170 |
| BssNAI | GTATAC | 1 cut(s) | 6128 |
| BssNI | GRCGYC | 2 cut(s) | 533, 4100 |
| BssSI | CACGAG | 2 cut(s) | 4458, 4652 |
| BssT1I | CCWWGG | 7 cut(s) | 1378, 1907, 3516, 5946, 6453, 6539, 7514 |
| Bst1107I | GTATAC | 1 cut(s) | 6128 |
| Bst2BI | CACGAG | 2 cut(s) | 4458, 4652 |
| Bst2UI | CCWGG | 4 cut(s) | 2135, 2880, 4985, 7492 |
| BstACI | GRCGYC | 2 cut(s) | 533, 4100 |
| BstAFI | CTTAAG | 2 cut(s) | 95, 1031 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 5131, 7040 |
| BstAUI | TGTACA | 3 cut(s) | 1944, 2723, 3215 |
| BstBAI | YACGTR | 2 cut(s) | 2389, 7354 |
| BstBI | TTCGAA | 1 cut(s) | 1447 |
| BstC8I | GCNNGC | 6 cut(s) | 740, 1208, 1454, 3729, 3987, 4025 |
| BstDSI | CCRYGG | 4 cut(s) | 2935, 5757, 6539, 7514 |
| BstEII | GGTNACC | 1 cut(s) | 3443 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 5272 |
| BstFNI | CGCG | 4 cut(s) | 272, 412, 5173, 5753 |
| BstH2I | RGCGCY | 4 cut(s) | 478, 491, 683, 2639 |
| BstMCI | CGRYCG | 3 cut(s) | 416, 1041, 3209 |
| BstNI | CCWGG | 4 cut(s) | 2135, 2880, 4985, 7492 |
| BstNSI | RCATGY | 7 cut(s) | 1409, 3731, 5582, 5849, 6069, 6383, 7266 |
| BstPI | GGTNACC | 1 cut(s) | 3443 |
| BstSCI | CCNGG | 8 cut(s) | 295, 682, 2098, 2133, 2204, 2878, 4983, 7490 |
| BstSLI | GKGCMC | 2 cut(s) | 4230, 6955 |
| BstSNI | TACGTA | 1 cut(s) | 7354 |
| BstUI | CGCG | 4 cut(s) | 272, 412, 5173, 5753 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1795, 2990 |
| BstZ17I | GTATAC | 1 cut(s) | 6128 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2286 |
| BsuI | GTATCC | 5 cut(s) | 792, 1272, 4345, 6327, 6820 |
| BsuRI | GGCC | 8 cut(s) | 604, 963, 2291, 2527, 2863, 5278, 6930, 7278 |
| BtgI | CCRYGG | 4 cut(s) | 2935, 5757, 6539, 7514 |
| BtrI | CACGTC | 1 cut(s) | 7192 |
| BtsI | GCAGTG | 3 cut(s) | 1868, 5620, 7371 |
| BveI | ACCTGC | 2 cut(s) | 3126, 7406 |
| Cac8I | GCNNGC | 6 cut(s) | 740, 1208, 1454, 3729, 3987, 4025 |
| CaiI | CAGNNNCTG | 3 cut(s) | 4643, 5831, 7040 |
| CciI | TCATGA | 4 cut(s) | 106, 1248, 3346, 4471 |
| Cfr10I | RCCGGY | 1 cut(s) | 170 |
| Cfr13I | GGNCC | 4 cut(s) | 1628, 2290, 3083, 7276 |
| CseI | GACGC | 3 cut(s) | 522, 5742, 5879 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 7246, 7281 |
| DraI | TTTAAA | 3 cut(s) | 1002, 1389, 7224 |
| DraIII | CACNNNGTG | 1 cut(s) | 1994 |
| EciI | GGCGGA | 2 cut(s) | 1629, 7471 |
| Ecl136II | GAGCTC | 1 cut(s) | 4203 |
| Eco105I | TACGTA | 1 cut(s) | 7354 |
| Eco130I | CCWWGG | 7 cut(s) | 1378, 1907, 3516, 5946, 6453, 6539, 7514 |
| Eco147I | AGGCCT | 1 cut(s) | 5278 |
| Eco24I | GRGCYC | 3 cut(s) | 1212, 3102, 4205 |
| Eco31I | GGTCTC | 4 cut(s) | 1081, 1908, 4436, 4747 |
| Eco32I | GATATC | 3 cut(s) | 2379, 3978, 6564 |
| Eco47I | GGWCC | 2 cut(s) | 1628, 3083 |
| Eco47III | AGCGCT | 1 cut(s) | 2637 |
| Eco53kI | GAGCTC | 1 cut(s) | 4203 |
| Eco81I | CCTNAGG | 1 cut(s) | 2286 |
| Eco88I | CYCGRG | 1 cut(s) | 6686 |
| Eco91I | GGTNACC | 1 cut(s) | 3443 |
| EcoICRI | GAGCTC | 1 cut(s) | 4203 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 5272 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2290 |
| EcoO65I | GGTNACC | 1 cut(s) | 3443 |
| EcoRI | GAATTC | 3 cut(s) | 4345, 6394, 7114 |
| EcoRII | CCWGG | 4 cut(s) | 2133, 2878, 4983, 7490 |
| EcoRV | GATATC | 3 cut(s) | 2379, 3978, 6564 |
| EcoT14I | CCWWGG | 7 cut(s) | 1378, 1907, 3516, 5946, 6453, 6539, 7514 |
| EcoT22I | ATGCAT | 5 cut(s) | 1147, 4212, 4907, 5034, 5847 |
| EcoT38I | GRGCYC | 3 cut(s) | 1212, 3102, 4205 |
| ErhI | CCWWGG | 7 cut(s) | 1378, 1907, 3516, 5946, 6453, 6539, 7514 |
| Esp3I | CGTCTC | 4 cut(s) | 1098, 4479, 6584, 7701 |
| FaqI | GGGAC | 3 cut(s) | 4662, 4904, 4962 |
| FauI | CCCGC | 1 cut(s) | 1199 |
| FauNDI | CATATG | 1 cut(s) | 5841 |
| FbaI | TGATCA | 3 cut(s) | 2947, 3670, 5836 |
| FblI | GTMKAC | 6 cut(s) | 1483, 4047, 4217, 4261, 6127, 6891 |
| FriOI | GRGCYC | 3 cut(s) | 1212, 3102, 4205 |
| FspAI | RTGCGCAY | 1 cut(s) | 5549 |
| FspI | TGCGCA | 1 cut(s) | 5549 |
| GsaI | CCCAGC | 3 cut(s) | 746, 1217, 4640 |
| GsuI | CTGGAG | 8 cut(s) | 231, 689, 1550, 3310, 5669, 6316, 6942, 7513 |
| HaeII | RGCGCY | 4 cut(s) | 478, 491, 683, 2639 |
| HaeIII | GGCC | 8 cut(s) | 604, 963, 2291, 2527, 2863, 5278, 6930, 7278 |
| HapII | CCGG | 6 cut(s) | 171, 283, 296, 683, 2099, 2205 |
| HgaI | GACGC | 3 cut(s) | 522, 5742, 5879 |
| Hin1I | GRCGYC | 2 cut(s) | 533, 4100 |
| HincII | GTYRAC | 1 cut(s) | 5869 |
| HindII | GTYRAC | 1 cut(s) | 5869 |
| HindIII | AAGCTT | 6 cut(s) | 1028, 1450, 2155, 3983, 6098, 7169 |
| HpaII | CCGG | 6 cut(s) | 171, 283, 296, 683, 2099, 2205 |
| Hpy99I | CGWCG | 2 cut(s) | 4105, 6860 |
| Hsp92I | GRCGYC | 2 cut(s) | 533, 4100 |
| Ksp22I | TGATCA | 3 cut(s) | 2947, 3670, 5836 |
| LguI | GCTCTTC | 1 cut(s) | 5097 |
| MbiI | CCGCTC | 1 cut(s) | 1281 |
| MfeI | CAATTG | 3 cut(s) | 3691, 4797, 5553 |
| MhlI | GDGCHC | 9 cut(s) | 257, 1212, 1755, 1805, 1868, 3102, 4205, 4230, 6955 |
| MlyI | GAGTC | 7 cut(s) | 346, 1489, 1589, 1924, 6403, 6458, 7031 |
| MmeI | TCCRAC | 7 cut(s) | 378, 2629, 3265, 3758, 5138, 5361, 7512 |
| Mph1103I | ATGCAT | 5 cut(s) | 1147, 4212, 4907, 5034, 5847 |
| MroXI | GAANNNNTTC | 6 cut(s) | 2119, 2213, 3620, 4512, 6151, 6462 |
| MslI | CAYNNNNRTG | 9 cut(s) | 345, 1153, 4886, 5262, 5844, 6944, 7059, 7431, 7572 |
| MspA1I | CMGCKG | 2 cut(s) | 738, 7722 |
| MspCI | CTTAAG | 2 cut(s) | 95, 1031 |
| MspI | CCGG | 6 cut(s) | 171, 283, 296, 683, 2099, 2205 |
| MspR9I | CCNGG | 8 cut(s) | 297, 684, 2100, 2135, 2206, 2880, 4985, 7492 |
| MunI | CAATTG | 3 cut(s) | 3691, 4797, 5553 |
| Mva1269I | GAATGC | 4 cut(s) | 3620, 4588, 5289, 5348 |
| MvaI | CCWGG | 4 cut(s) | 2135, 2880, 4985, 7492 |
| MvnI | CGCG | 4 cut(s) | 272, 412, 5173, 5753 |
| NciI | CCSGG | 4 cut(s) | 297, 684, 2100, 2206 |
| NcoI | CCATGG | 2 cut(s) | 6539, 7514 |
| NdeI | CATATG | 1 cut(s) | 5841 |
| NlaIV | GGNNCC | 9 cut(s) | 822, 1211, 2292, 3042, 4814, 5266, 7197, 7277, 7524 |
| NsbI | TGCGCA | 1 cut(s) | 5549 |
| NsiI | ATGCAT | 5 cut(s) | 1147, 4212, 4907, 5034, 5847 |
| NspI | RCATGY | 7 cut(s) | 1409, 3731, 5582, 5849, 6069, 6383, 7266 |
| NspV | TTCGAA | 1 cut(s) | 1447 |
| PaeI | GCATGC | 1 cut(s) | 3731 |
| PaeR7I | CTCGAG | 1 cut(s) | 6686 |
| PagI | TCATGA | 4 cut(s) | 106, 1248, 3346, 4471 |
| PceI | AGGCCT | 1 cut(s) | 5278 |
| PciI | ACATGT | 3 cut(s) | 1405, 6065, 6379 |
| PciSI | GCTCTTC | 1 cut(s) | 5097 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 530 |
| PctI | GAATGC | 4 cut(s) | 3620, 4588, 5289, 5348 |
| PdmI | GAANNNNTTC | 6 cut(s) | 2119, 2213, 3620, 4512, 6151, 6462 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 959, 5785, 7555 |
| PleI | GAGTC | 7 cut(s) | 345, 1488, 1589, 1924, 6403, 6457, 7031 |
| PpsI | GAGTC | 7 cut(s) | 345, 1488, 1589, 1924, 6403, 6457, 7031 |
| Ppu21I | YACGTR | 2 cut(s) | 2389, 7354 |
| PscI | ACATGT | 3 cut(s) | 1405, 6065, 6379 |
| PshBI | ATTAAT | 3 cut(s) | 3942, 4088, 4527 |
| PsiI | TTATAA | 1 cut(s) | 188 |
| Psp124BI | GAGCTC | 1 cut(s) | 4205 |
| Psp6I | CCWGG | 4 cut(s) | 2133, 2878, 4983, 7490 |
| PspEI | GGTNACC | 1 cut(s) | 3443 |
| PspFI | CCCAGC | 3 cut(s) | 742, 1213, 4636 |
| PspGI | CCWGG | 4 cut(s) | 2133, 2878, 4983, 7490 |
| PspN4I | GGNNCC | 9 cut(s) | 822, 1211, 2292, 3042, 4814, 5266, 7197, 7277, 7524 |
| PspPI | GGNCC | 4 cut(s) | 1628, 2290, 3083, 7276 |
| PspXI | VCTCGAGB | 1 cut(s) | 6686 |
| PstI | CTGCAG | 6 cut(s) | 570, 913, 1863, 2316, 5403, 6178 |
| PstNI | CAGNNNCTG | 3 cut(s) | 4643, 5831, 7040 |
| PvuII | CAGCTG | 1 cut(s) | 7722 |
| RseI | CAYNNNNRTG | 9 cut(s) | 345, 1153, 4886, 5262, 5844, 6944, 7059, 7431, 7572 |
| SacI | GAGCTC | 1 cut(s) | 4205 |
| SapI | GCTCTTC | 1 cut(s) | 5097 |
| Sau96I | GGNCC | 4 cut(s) | 1628, 2290, 3083, 7276 |
| ScaI | AGTACT | 2 cut(s) | 2044, 3545 |
| SchI | GAGTC | 7 cut(s) | 346, 1489, 1589, 1924, 6403, 6458, 7031 |
| ScrFI | CCNGG | 8 cut(s) | 297, 684, 2100, 2135, 2206, 2880, 4985, 7492 |
| SduI | GDGCHC | 9 cut(s) | 257, 1212, 1755, 1805, 1868, 3102, 4205, 4230, 6955 |
| Sfr274I | CTCGAG | 1 cut(s) | 6686 |
| SfuI | TTCGAA | 1 cut(s) | 1447 |
| SinI | GGWCC | 2 cut(s) | 1628, 3083 |
| SlaI | CTCGAG | 1 cut(s) | 6686 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 345, 1153, 4886, 5262, 5844, 6944, 7059, 7431, 7572 |
| SmlI | CTYRAG | 9 cut(s) | 95, 1031, 1358, 1421, 1507, 1718, 2639, 6404, 6686 |
| SmoI | CTYRAG | 9 cut(s) | 95, 1031, 1358, 1421, 1507, 1718, 2639, 6404, 6686 |
| SnaBI | TACGTA | 1 cut(s) | 7354 |
| SpeI | ACTAGT | 1 cut(s) | 4253 |
| SphI | GCATGC | 1 cut(s) | 3731 |
| SseBI | AGGCCT | 1 cut(s) | 5278 |
| SsiI | CCGC | 9 cut(s) | 412, 485, 736, 1006, 1206, 1279, 1614, 6340, 7456 |
| SspI | AATATT | 4 cut(s) | 880, 2742, 3940, 4396 |
| SstI | GAGCTC | 1 cut(s) | 4205 |
| StuI | AGGCCT | 1 cut(s) | 5278 |
| StyD4I | CCNGG | 8 cut(s) | 295, 682, 2098, 2133, 2204, 2878, 4983, 7490 |
| StyI | CCWWGG | 7 cut(s) | 1378, 1907, 3516, 5946, 6453, 6539, 7514 |
| TaqII | GACCGA | 2 cut(s) | 1055, 4623 |
| TatI | WGTACW | 6 cut(s) | 1944, 2042, 2723, 3215, 3543, 5050 |
| TauI | GCSGC | 2 cut(s) | 488, 1009 |
| TspGWI | ACGGA | 3 cut(s) | 5656, 6713, 7299 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 959, 5785, 7555 |
| Vha464I | CTTAAG | 2 cut(s) | 95, 1031 |
| VpaK11BI | GGWCC | 2 cut(s) | 1628, 3083 |
| VspI | ATTAAT | 3 cut(s) | 3942, 4088, 4527 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 5272 |
| XbaI | TCTAGA | 3 cut(s) | 4246, 5021, 5350 |
| XceI | RCATGY | 7 cut(s) | 1409, 3731, 5582, 5849, 6069, 6383, 7266 |
| XhoI | CTCGAG | 1 cut(s) | 6686 |
| XmiI | GTMKAC | 6 cut(s) | 1483, 4047, 4217, 4261, 6127, 6891 |
| XmnI | GAANNNNTTC | 6 cut(s) | 2119, 2213, 3620, 4512, 6151, 6462 |
| ZraI | GACGTC | 1 cut(s) | 4101 |
| ZrmI | AGTACT | 2 cut(s) | 2044, 3545 |
| Zsp2I | ATGCAT | 5 cut(s) | 1147, 4212, 4907, 5034, 5847 |