Nucleolar pre-ribosomal-associated protein 1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G72270 AT4G27010 AT4G27010 |
| fragaria_vesca | FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 |
| malus_domestica | MD03G1202300.v1.1 |
| prunus_persica | Prupe.4G211600_v2.0.a1 Prupe.4G211600_v2.0.a1 Prupe.4G211600_v2.0.a1 |
| pyrus_communis | pycom03g15370 pycom03g15380 pycom03g15390 |
| rosa_chinensis | RchiOBHm_Chr5g0039261 |
| rosa_laevigata | RLG00000033900 RLG00000033902 |
| rosa_multiflora | Rmu_sc0000533.1_g000002 Rmu_sc0000533.1_g000003 Rmu_ssc0000410.1_g000046 |
| rosa_roxburghii | Rroxscaffold_1G00040450 Rroxscaffold_1G00041880 |
| rosa_rugosa | Rorug05G0177300 |
| rosa_samantha | Rh5AG264000 Rh5BG268900 Rh5CG301900 Rh5DG276600 |
| rosa_wichuraiana | Rw5G024750 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1172 |
| Acc36I | ACCTGC | 2 cut(s) | 1703, 2354 |
| AccI | GTMKAC | 2 cut(s) | 1431, 4322 |
| AciI | CCGC | 9 cut(s) | 455, 881, 1287, 3557, 3673, 5421, 5465, 6062, 6458 |
| AclI | AACGTT | 1 cut(s) | 6867 |
| AdeI | CACNNNGTG | 1 cut(s) | 5621 |
| AfaI | GTAC | 8 cut(s) | 692, 1717, 2140, 2229, 2406, 3790, 4460, 7024 |
| AflIII | ACRYGT | 2 cut(s) | 3832, 5278 |
| AgeI | ACCGGT | 1 cut(s) | 4728 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1204, 3329 |
| AhlI | ACTAGT | 2 cut(s) | 2360, 7190 |
| AjiI | CACGTC | 1 cut(s) | 4924 |
| AjnI | CCWGG | 5 cut(s) | 537, 2977, 5378, 5389, 6356 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 4513, 4545 |
| Alw21I | GWGCWC | 5 cut(s) | 227, 1964, 3245, 6407, 7063 |
| Alw44I | GTGCAC | 1 cut(s) | 7059 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 7127 |
| Ama87I | CYCGRG | 2 cut(s) | 652, 7304 |
| AoxI | GGCC | 5 cut(s) | 872, 2624, 2960, 2980, 5381 |
| ApaLI | GTGCAC | 1 cut(s) | 7059 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1498, 1530, 2242, 2274 |
| AseI | ATTAAT | 1 cut(s) | 1806 |
| AsiGI | ACCGGT | 1 cut(s) | 4728 |
| Asp700I | GAANNNNTTC | 8 cut(s) | 2215, 3970, 4043, 4550, 4730, 5272, 6256, 6567 |
| AspLEI | GCGC | 4 cut(s) | 1173, 1858, 5323, 6012 |
| AspS9I | GGNCC | 5 cut(s) | 648, 872, 1284, 3196, 7300 |
| AsuC2I | CCSGG | 5 cut(s) | 267, 362, 653, 654, 2196 |
| AsuII | TTCGAA | 1 cut(s) | 1474 |
| AsuNHI | GCTAGC | 1 cut(s) | 6076 |
| AvaI | CYCGRG | 2 cut(s) | 652, 7304 |
| AvaII | GGWCC | 4 cut(s) | 648, 1284, 3196, 7300 |
| AxyI | CCTNAGG | 1 cut(s) | 2832 |
| BaeGI | GKGCMC | 2 cut(s) | 4335, 7063 |
| BanII | GRGCYC | 1 cut(s) | 6407 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 674, 706 |
| BauI | CACGAG | 2 cut(s) | 980, 3063 |
| BbsI | GAAGAC | 4 cut(s) | 794, 1063, 4649, 5592 |
| Bbv12I | GWGCWC | 5 cut(s) | 227, 1964, 3245, 6407, 7063 |
| BceAI | ACGGC | 6 cut(s) | 2273, 5708, 5793, 6695, 7074, 7606 |
| BciT130I | CCWGG | 5 cut(s) | 539, 2979, 5380, 5391, 6358 |
| BciVI | GTATCC | 3 cut(s) | 1202, 1275, 6432 |
| BclI | TGATCA | 3 cut(s) | 1489, 3775, 5440 |
| BcnI | CCSGG | 5 cut(s) | 267, 362, 653, 654, 2196 |
| BcuI | ACTAGT | 2 cut(s) | 2360, 7190 |
| BfmI | CTRYAG | 8 cut(s) | 1071, 1725, 1840, 1955, 2408, 4230, 6231, 6279 |
| BfuAI | ACCTGC | 2 cut(s) | 1703, 2354 |
| BfuI | GTATCC | 3 cut(s) | 1202, 1275, 6432 |
| BglII | AGATCT | 4 cut(s) | 1951, 5242, 6915, 7013 |
| BmcAI | AGTACT | 2 cut(s) | 2140, 2229 |
| Bme18I | GGWCC | 4 cut(s) | 648, 1284, 3196, 7300 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1204, 3329 |
| BmeT110I | CYCGRG | 2 cut(s) | 652, 7304 |
| BmgBI | CACGTC | 1 cut(s) | 4924 |
| BmgT120I | GGNCC | 5 cut(s) | 648, 872, 1284, 3196, 7300 |
| BmiI | GGNNCC | 4 cut(s) | 649, 650, 4733, 7302 |
| BmrI | ACTGGG | 2 cut(s) | 2310, 2332 |
| BmtI | GCTAGC | 1 cut(s) | 6080 |
| BmuI | ACTGGG | 2 cut(s) | 2310, 2332 |
| BpiI | GAAGAC | 4 cut(s) | 794, 1063, 4649, 5592 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1999, 2031, 7048, 7080 |
| BpmI | CTGGAG | 5 cut(s) | 521, 659, 2252, 3392, 7050 |
| Bpu14I | TTCGAA | 1 cut(s) | 1474 |
| BpuEI | CTTGAG | 4 cut(s) | 2759, 4611, 6530, 6815 |
| BpuMI | CCSGG | 5 cut(s) | 267, 362, 653, 654, 2196 |
| BsaAI | YACGTR | 1 cut(s) | 1435 |
| BsaI | GGTCTC | 1 cut(s) | 1395 |
| BsaWI | WCCGGW | 2 cut(s) | 4728, 5126 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3365, 3395 |
| Bse118I | RCCGGY | 2 cut(s) | 1281, 4728 |
| Bse21I | CCTNAGG | 1 cut(s) | 2832 |
| Bse3DI | GCAATG | 9 cut(s) | 633, 3501, 3673, 3945, 4246, 4390, 4719, 4944, 5015 |
| BseBI | CCWGG | 5 cut(s) | 539, 2979, 5380, 5391, 6358 |
| BseMI | GCAATG | 9 cut(s) | 633, 3501, 3673, 3945, 4246, 4390, 4719, 4944, 5015 |
| BseRI | GAGGAG | 2 cut(s) | 6397, 7418 |
| BseSI | GKGCMC | 2 cut(s) | 4335, 7063 |
| BsgI | GTGCAG | 1 cut(s) | 1262 |
| Bsh1285I | CGRYCG | 1 cut(s) | 386 |
| BshFI | GGCC | 5 cut(s) | 874, 2626, 2962, 2982, 5383 |
| BshTI | ACCGGT | 1 cut(s) | 4728 |
| BsiEI | CGRYCG | 1 cut(s) | 386 |
| BsiHKAI | GWGCWC | 5 cut(s) | 227, 1964, 3245, 6407, 7063 |
| BsiHKCI | CYCGRG | 2 cut(s) | 652, 7304 |
| BsiSI | CCGG | 8 cut(s) | 253, 267, 361, 653, 1282, 2195, 4729, 5127 |
| BslFI | GGGAC | 5 cut(s) | 661, 776, 1984, 5012, 5399 |
| BsmBI | CGTCTC | 2 cut(s) | 1524, 2902 |
| BsmFI | GGGAC | 5 cut(s) | 661, 776, 1984, 5012, 5399 |
| BsmI | GAATGC | 5 cut(s) | 2682, 2889, 4980, 5394, 5959 |
| BsnI | GGCC | 5 cut(s) | 874, 2626, 2962, 2982, 5383 |
| Bso31I | GGTCTC | 1 cut(s) | 1395 |
| BsoBI | CYCGRG | 2 cut(s) | 652, 7304 |
| Bsp119I | TTCGAA | 1 cut(s) | 1474 |
| Bsp1286I | GDGCHC | 6 cut(s) | 227, 1964, 3245, 4335, 6407, 7063 |
| Bsp19I | CCATGG | 1 cut(s) | 6242 |
| BspACI | CCGC | 9 cut(s) | 455, 881, 1287, 3557, 3673, 5421, 5465, 6062, 6458 |
| BspANI | GGCC | 5 cut(s) | 874, 2626, 2962, 2982, 5383 |
| BspHI | TCATGA | 4 cut(s) | 1251, 2061, 3088, 3754 |
| BspLI | GGNNCC | 4 cut(s) | 649, 650, 4733, 7302 |
| BspMAI | CTGCAG | 5 cut(s) | 1075, 1729, 1959, 2412, 6283 |
| BspMI | ACCTGC | 2 cut(s) | 1703, 2354 |
| BspOI | GCTAGC | 1 cut(s) | 6080 |
| BspQI | GCTCTTC | 2 cut(s) | 4389, 7200 |
| BspT104I | TTCGAA | 1 cut(s) | 1474 |
| BspTNI | GGTCTC | 1 cut(s) | 1395 |
| BsrDI | GCAATG | 9 cut(s) | 633, 3501, 3673, 3945, 4246, 4390, 4719, 4944, 5015 |
| BsrFI | RCCGGY | 2 cut(s) | 1281, 4728 |
| BssAI | RCCGGY | 2 cut(s) | 1281, 4728 |
| BssNAI | GTATAC | 1 cut(s) | 1432 |
| BssSI | CACGAG | 2 cut(s) | 980, 3063 |
| BssT1I | CCWWGG | 4 cut(s) | 3621, 6051, 6242, 6558 |
| Bst1107I | GTATAC | 1 cut(s) | 1432 |
| Bst2BI | CACGAG | 2 cut(s) | 980, 3063 |
| Bst2UI | CCWGG | 5 cut(s) | 539, 2979, 5380, 5391, 6358 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 2126, 5590, 7127, 7148 |
| BstBAI | YACGTR | 1 cut(s) | 1435 |
| BstBI | TTCGAA | 1 cut(s) | 1474 |
| BstDSI | CCRYGG | 3 cut(s) | 3034, 6242, 7622 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2987, 6032 |
| BstHHI | GCGC | 4 cut(s) | 1173, 1858, 5323, 6012 |
| BstMCI | CGRYCG | 1 cut(s) | 386 |
| BstNI | CCWGG | 5 cut(s) | 539, 2979, 5380, 5391, 6358 |
| BstNSI | RCATGY | 4 cut(s) | 1184, 3836, 5282, 7679 |
| BstSFI | CTRYAG | 8 cut(s) | 1071, 1725, 1840, 1955, 2408, 4230, 6231, 6279 |
| BstSLI | GKGCMC | 2 cut(s) | 4335, 7063 |
| BstSNI | TACGTA | 1 cut(s) | 1435 |
| BstV2I | GAAGAC | 4 cut(s) | 794, 1063, 4649, 5592 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1891, 7297 |
| BstZ17I | GTATAC | 1 cut(s) | 1432 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2832 |
| BsuI | GTATCC | 3 cut(s) | 1202, 1275, 6432 |
| BsuRI | GGCC | 5 cut(s) | 874, 2626, 2962, 2982, 5383 |
| BtgI | CCRYGG | 3 cut(s) | 3034, 6242, 7622 |
| BtrI | CACGTC | 1 cut(s) | 4924 |
| BtsI | GCAGTG | 7 cut(s) | 1180, 1722, 1964, 3535, 4924, 5725, 7251 |
| BveI | ACCTGC | 2 cut(s) | 1703, 2354 |
| CaiI | CAGNNNCTG | 1 cut(s) | 7127 |
| CciI | TCATGA | 4 cut(s) | 1251, 2061, 3088, 3754 |
| CfoI | GCGC | 4 cut(s) | 1173, 1858, 5323, 6012 |
| Cfr10I | RCCGGY | 2 cut(s) | 1281, 4728 |
| Cfr13I | GGNCC | 5 cut(s) | 648, 872, 1284, 3196, 7300 |
| Cfr9I | CCCGGG | 1 cut(s) | 652 |
| CpoI | CGGWCCG | 1 cut(s) | 1284 |
| CseI | GACGC | 2 cut(s) | 1104, 3263 |
| Csp6I | GTAC | 8 cut(s) | 691, 1716, 2139, 2228, 2405, 3789, 4459, 7023 |
| CspAI | ACCGGT | 1 cut(s) | 4728 |
| CspI | CGGWCCG | 1 cut(s) | 1284 |
| CviQI | GTAC | 8 cut(s) | 691, 1716, 2139, 2228, 2405, 3789, 4459, 7023 |
| DraI | TTTAAA | 5 cut(s) | 286, 1392, 2631, 4105, 7329 |
| DraIII | CACNNNGTG | 1 cut(s) | 5621 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1204, 3329 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1204, 3329 |
| Ecl136II | GAGCTC | 1 cut(s) | 6405 |
| Eco105I | TACGTA | 1 cut(s) | 1435 |
| Eco130I | CCWWGG | 4 cut(s) | 3621, 6051, 6242, 6558 |
| Eco147I | AGGCCT | 2 cut(s) | 2626, 5383 |
| Eco24I | GRGCYC | 1 cut(s) | 6407 |
| Eco31I | GGTCTC | 1 cut(s) | 1395 |
| Eco32I | GATATC | 3 cut(s) | 2475, 4863, 7230 |
| Eco47I | GGWCC | 4 cut(s) | 648, 1284, 3196, 7300 |
| Eco53kI | GAGCTC | 1 cut(s) | 6405 |
| Eco81I | CCTNAGG | 1 cut(s) | 2832 |
| Eco88I | CYCGRG | 2 cut(s) | 652, 7304 |
| EcoICRI | GAGCTC | 1 cut(s) | 6405 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2987, 6032 |
| EcoO109I | RGGNCCY | 1 cut(s) | 648 |
| EcoRI | GAATTC | 3 cut(s) | 211, 4465, 7219 |
| EcoRII | CCWGG | 5 cut(s) | 537, 2977, 5378, 5389, 6356 |
| EcoRV | GATATC | 3 cut(s) | 2475, 4863, 7230 |
| EcoT14I | CCWWGG | 4 cut(s) | 3621, 6051, 6242, 6558 |
| EcoT22I | ATGCAT | 4 cut(s) | 1735, 3785, 5567, 7161 |
| EcoT38I | GRGCYC | 1 cut(s) | 6407 |
| ErhI | CCWWGG | 4 cut(s) | 3621, 6051, 6242, 6558 |
| Esp3I | CGTCTC | 2 cut(s) | 1524, 2902 |
| FaqI | GGGAC | 5 cut(s) | 661, 776, 1984, 5012, 5399 |
| FauI | CCCGC | 2 cut(s) | 6055, 6451 |
| FauNDI | CATATG | 4 cut(s) | 2110, 2399, 2482, 4012 |
| FbaI | TGATCA | 3 cut(s) | 1489, 3775, 5440 |
| FblI | GTMKAC | 2 cut(s) | 1431, 4322 |
| FriOI | GRGCYC | 1 cut(s) | 6407 |
| FspI | TGCGCA | 1 cut(s) | 1172 |
| GlaI | GCGC | 4 cut(s) | 1172, 1857, 5322, 6011 |
| GsuI | CTGGAG | 5 cut(s) | 521, 659, 2252, 3392, 7050 |
| HaeIII | GGCC | 5 cut(s) | 874, 2626, 2962, 2982, 5383 |
| HapII | CCGG | 8 cut(s) | 253, 267, 361, 653, 1282, 2195, 4729, 5127 |
| HgaI | GACGC | 2 cut(s) | 1104, 3263 |
| HhaI | GCGC | 4 cut(s) | 1173, 1858, 5323, 6012 |
| Hin6I | GCGC | 4 cut(s) | 1171, 1856, 5321, 6010 |
| HinP1I | GCGC | 4 cut(s) | 1171, 1856, 5321, 6010 |
| HincII | GTYRAC | 8 cut(s) | 847, 1506, 1980, 3334, 3901, 5842, 6213, 7749 |
| HindII | GTYRAC | 8 cut(s) | 847, 1506, 1980, 3334, 3901, 5842, 6213, 7749 |
| HindIII | AAGCTT | 4 cut(s) | 998, 1552, 2251, 7274 |
| HpaI | GTTAAC | 2 cut(s) | 847, 1980 |
| HpaII | CCGG | 8 cut(s) | 253, 267, 361, 653, 1282, 2195, 4729, 5127 |
| Hpy99I | CGWCG | 1 cut(s) | 1120 |
| HpyCH4IV | ACGT | 8 cut(s) | 676, 955, 1434, 1989, 4375, 4923, 6867, 7243 |
| HpySE526I | ACGT | 8 cut(s) | 676, 955, 1434, 1989, 4375, 4923, 6867, 7243 |
| HspAI | GCGC | 4 cut(s) | 1171, 1856, 5321, 6010 |
| KflI | GGGWCCC | 1 cut(s) | 648 |
| Ksp22I | TGATCA | 3 cut(s) | 1489, 3775, 5440 |
| KspAI | GTTAAC | 2 cut(s) | 847, 1980 |
| LguI | GCTCTTC | 2 cut(s) | 4389, 7200 |
| LmnI | GCTCC | 8 cut(s) | 198, 229, 255, 1488, 6402, 6410, 6893, 7351 |
| MaeII | ACGT | 8 cut(s) | 676, 955, 1434, 1989, 4375, 4923, 6867, 7243 |
| MfeI | CAATTG | 3 cut(s) | 3246, 5180, 5658 |
| MhlI | GDGCHC | 6 cut(s) | 227, 1964, 3245, 4335, 6407, 7063 |
| MmeI | TCCRAC | 8 cut(s) | 1554, 1972, 3301, 3330, 3364, 5243, 5466, 7459 |
| Mph1103I | ATGCAT | 4 cut(s) | 1735, 3785, 5567, 7161 |
| MroXI | GAANNNNTTC | 8 cut(s) | 2215, 3970, 4043, 4550, 4730, 5272, 6256, 6567 |
| MslI | CAYNNNNRTG | 7 cut(s) | 315, 2278, 2485, 4994, 5105, 5535, 7780 |
| MspA1I | CMGCKG | 3 cut(s) | 1568, 5465, 7481 |
| MspI | CCGG | 8 cut(s) | 253, 267, 361, 653, 1282, 2195, 4729, 5127 |
| MunI | CAATTG | 3 cut(s) | 3246, 5180, 5658 |
| Mva1269I | GAATGC | 5 cut(s) | 2682, 2889, 4980, 5394, 5959 |
| MvaI | CCWGG | 5 cut(s) | 539, 2979, 5380, 5391, 6358 |
| NciI | CCSGG | 5 cut(s) | 267, 362, 653, 654, 2196 |
| NcoI | CCATGG | 1 cut(s) | 6242 |
| NdeI | CATATG | 4 cut(s) | 2110, 2399, 2482, 4012 |
| NheI | GCTAGC | 1 cut(s) | 6076 |
| NlaIV | GGNNCC | 4 cut(s) | 649, 650, 4733, 7302 |
| NsbI | TGCGCA | 1 cut(s) | 1172 |
| NsiI | ATGCAT | 4 cut(s) | 1735, 3785, 5567, 7161 |
| NspI | RCATGY | 4 cut(s) | 1184, 3836, 5282, 7679 |
| NspV | TTCGAA | 1 cut(s) | 1474 |
| PaeI | GCATGC | 2 cut(s) | 1184, 7679 |
| PagI | TCATGA | 4 cut(s) | 1251, 2061, 3088, 3754 |
| PceI | AGGCCT | 2 cut(s) | 2626, 5383 |
| PciI | ACATGT | 2 cut(s) | 3832, 5278 |
| PciSI | GCTCTTC | 2 cut(s) | 4389, 7200 |
| PctI | GAATGC | 5 cut(s) | 2682, 2889, 4980, 5394, 5959 |
| PdmI | GAANNNNTTC | 8 cut(s) | 2215, 3970, 4043, 4550, 4730, 5272, 6256, 6567 |
| PinAI | ACCGGT | 1 cut(s) | 4728 |
| Ppu21I | YACGTR | 1 cut(s) | 1435 |
| PpuMI | RGGWCCY | 1 cut(s) | 648 |
| PscI | ACATGT | 2 cut(s) | 3832, 5278 |
| PshBI | ATTAAT | 1 cut(s) | 1806 |
| Psp124BI | GAGCTC | 1 cut(s) | 6407 |
| Psp1406I | AACGTT | 1 cut(s) | 6867 |
| Psp5II | RGGWCCY | 1 cut(s) | 648 |
| Psp6I | CCWGG | 5 cut(s) | 537, 2977, 5378, 5389, 6356 |
| PspGI | CCWGG | 5 cut(s) | 537, 2977, 5378, 5389, 6356 |
| PspN4I | GGNNCC | 4 cut(s) | 649, 650, 4733, 7302 |
| PspPI | GGNCC | 5 cut(s) | 648, 872, 1284, 3196, 7300 |
| PspPPI | RGGWCCY | 1 cut(s) | 648 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 5571, 5603 |
| PstI | CTGCAG | 5 cut(s) | 1075, 1729, 1959, 2412, 6283 |
| PstNI | CAGNNNCTG | 1 cut(s) | 7127 |
| PvuII | CAGCTG | 2 cut(s) | 1568, 7481 |
| RsaI | GTAC | 8 cut(s) | 692, 1717, 2140, 2229, 2406, 3790, 4460, 7024 |
| RsaNI | GTAC | 8 cut(s) | 691, 1716, 2139, 2228, 2405, 3789, 4459, 7023 |
| RseI | CAYNNNNRTG | 7 cut(s) | 315, 2278, 2485, 4994, 5105, 5535, 7780 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1284 |
| RsrII | CGGWCCG | 1 cut(s) | 1284 |
| SacI | GAGCTC | 1 cut(s) | 6407 |
| SapI | GCTCTTC | 2 cut(s) | 4389, 7200 |
| Sau96I | GGNCC | 5 cut(s) | 648, 872, 1284, 3196, 7300 |
| ScaI | AGTACT | 2 cut(s) | 2140, 2229 |
| SduI | GDGCHC | 6 cut(s) | 227, 1964, 3245, 4335, 6407, 7063 |
| SfcI | CTRYAG | 8 cut(s) | 1071, 1725, 1840, 1955, 2408, 4230, 6231, 6279 |
| SfuI | TTCGAA | 1 cut(s) | 1474 |
| SinI | GGWCC | 4 cut(s) | 648, 1284, 3196, 7300 |
| SmaI | CCCGGG | 1 cut(s) | 654 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 315, 2278, 2485, 4994, 5105, 5535, 7780 |
| SmlI | CTYRAG | 4 cut(s) | 2738, 4626, 6509, 6794 |
| SmoI | CTYRAG | 4 cut(s) | 2738, 4626, 6509, 6794 |
| SnaBI | TACGTA | 1 cut(s) | 1435 |
| SpeI | ACTAGT | 2 cut(s) | 2360, 7190 |
| SphI | GCATGC | 2 cut(s) | 1184, 7679 |
| SseBI | AGGCCT | 2 cut(s) | 2626, 5383 |
| SsiI | CCGC | 9 cut(s) | 455, 881, 1287, 3557, 3673, 5421, 5465, 6062, 6458 |
| SspI | AATATT | 3 cut(s) | 2916, 4203, 6903 |
| SstI | GAGCTC | 1 cut(s) | 6407 |
| StuI | AGGCCT | 2 cut(s) | 2626, 5383 |
| StyI | CCWWGG | 4 cut(s) | 3621, 6051, 6242, 6558 |
| TaiI | ACGT | 8 cut(s) | 679, 958, 1437, 1992, 4378, 4926, 6870, 7246 |
| TaqI | TCGA | 8 cut(s) | 386, 525, 1474, 1851, 2985, 3895, 4208, 7565 |
| TaqII | GACCGA | 1 cut(s) | 4890 |
| TatI | WGTACW | 4 cut(s) | 690, 2138, 2227, 2404 |
| TauI | GCSGC | 1 cut(s) | 458 |
| TspGWI | ACGGA | 4 cut(s) | 185, 5521, 5761, 6949 |
| TspMI | CCCGGG | 1 cut(s) | 652 |
| VneI | GTGCAC | 1 cut(s) | 7059 |
| VpaK11BI | GGWCC | 4 cut(s) | 648, 1284, 3196, 7300 |
| VspI | ATTAAT | 1 cut(s) | 1806 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2987, 6032 |
| XbaI | TCTAGA | 1 cut(s) | 4577 |
| XceI | RCATGY | 4 cut(s) | 1184, 3836, 5282, 7679 |
| XmaI | CCCGGG | 1 cut(s) | 652 |
| XmiI | GTMKAC | 2 cut(s) | 1431, 4322 |
| XmnI | GAANNNNTTC | 8 cut(s) | 2215, 3970, 4043, 4550, 4730, 5272, 6256, 6567 |
| ZrmI | AGTACT | 2 cut(s) | 2140, 2229 |
| Zsp2I | ATGCAT | 4 cut(s) | 1735, 3785, 5567, 7161 |