Nucleolar pre-ribosomal-associated protein 1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G72270 AT4G27010 AT4G27010 |
| fragaria_vesca | FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 FvH4_3g22520 |
| malus_domestica | MD03G1202300.v1.1 |
| prunus_persica | Prupe.4G211600_v2.0.a1 Prupe.4G211600_v2.0.a1 Prupe.4G211600_v2.0.a1 |
| pyrus_communis | pycom03g15370 pycom03g15380 pycom03g15390 |
| rosa_chinensis | RchiOBHm_Chr5g0039261 |
| rosa_laevigata | RLG00000033900 RLG00000033902 |
| rosa_multiflora | Rmu_sc0000533.1_g000002 Rmu_sc0000533.1_g000003 Rmu_ssc0000410.1_g000046 |
| rosa_roxburghii | Rroxscaffold_1G00040450 Rroxscaffold_1G00041880 |
| rosa_rugosa | Rorug05G0177300 |
| rosa_samantha | Rh5AG264000 Rh5BG268900 Rh5CG301900 Rh5DG276600 |
| rosa_wichuraiana | Rw5G024750 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2588 |
| Acc16I | TGCGCA | 2 cut(s) | 2124, 3232 |
| Acc36I | ACCTGC | 1 cut(s) | 7714 |
| Acc65I | GGTACC | 1 cut(s) | 1050 |
| AccB1I | GGYRCC | 2 cut(s) | 1050, 3130 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2961 |
| AccI | GTMKAC | 3 cut(s) | 310, 4310, 5325 |
| AciI | CCGC | 9 cut(s) | 283, 485, 1091, 1206, 1600, 2129, 2350, 5708, 6266 |
| AclI | AACGTT | 1 cut(s) | 879 |
| AcoI | YGGCCR | 1 cut(s) | 2963 |
| AcuI | CTGAAG | 9 cut(s) | 1179, 1923, 3725, 4998, 5261, 5796, 6542, 7130, 7590 |
| AcvI | CACGTG | 1 cut(s) | 5264 |
| AcyI | GRCGYC | 1 cut(s) | 985 |
| AdeI | CACNNNGTG | 2 cut(s) | 4414, 5606 |
| AfeI | AGCGCT | 1 cut(s) | 1964 |
| AflII | CTTAAG | 1 cut(s) | 1817 |
| AflIII | ACRYGT | 1 cut(s) | 5263 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1144 |
| AjiI | CACGTC | 1 cut(s) | 1270 |
| AjnI | CCWGG | 6 cut(s) | 567, 682, 1154, 3575, 5363, 6341 |
| Alw21I | GWGCWC | 4 cut(s) | 4298, 4410, 6648, 7048 |
| Alw44I | GTGCAC | 1 cut(s) | 7044 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 3334, 5021 |
| Ama87I | CYCGRG | 2 cut(s) | 1694, 3420 |
| Aor51HI | AGCGCT | 1 cut(s) | 1964 |
| AoxI | GGCC | 4 cut(s) | 2627, 2963, 5366, 7021 |
| ApaLI | GTGCAC | 1 cut(s) | 7044 |
| AseI | ATTAAT | 2 cut(s) | 141, 320 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 4532, 5257, 6552 |
| Asp718I | GGTACC | 1 cut(s) | 1050 |
| AspLEI | GCGC | 7 cut(s) | 905, 1965, 2125, 3233, 5308, 5640, 5997 |
| AspS9I | GGNCC | 4 cut(s) | 1314, 3173, 7285, 7709 |
| AsuC2I | CCSGG | 3 cut(s) | 2199, 3421, 3422 |
| AsuHPI | GGTGA | 7 cut(s) | 227, 599, 2591, 2788, 5684, 6081, 7154 |
| AsuII | TTCGAA | 3 cut(s) | 835, 2654, 5491 |
| AvaI | CYCGRG | 2 cut(s) | 1694, 3420 |
| AvaII | GGWCC | 4 cut(s) | 1314, 3173, 7285, 7709 |
| AxyI | CCTNAGG | 1 cut(s) | 989 |
| BaeGI | GKGCMC | 2 cut(s) | 4323, 7048 |
| BalI | TGGCCA | 1 cut(s) | 2965 |
| BamHI | GGATCC | 2 cut(s) | 2447, 6237 |
| BanI | GGYRCC | 2 cut(s) | 1050, 3130 |
| BanII | GRGCYC | 3 cut(s) | 3189, 3427, 4298 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 704, 736 |
| BbrPI | CACGTG | 1 cut(s) | 5264 |
| BbsI | GAAGAC | 5 cut(s) | 824, 2535, 4631, 5577, 7469 |
| Bbv12I | GWGCWC | 4 cut(s) | 4298, 4410, 6648, 7048 |
| BbvCI | CCTCAGC | 1 cut(s) | 692 |
| BceAI | ACGGC | 4 cut(s) | 722, 4121, 5778, 7026 |
| BciT130I | CCWGG | 6 cut(s) | 569, 684, 1156, 3577, 5365, 6343 |
| BciVI | GTATCC | 4 cut(s) | 1305, 4346, 6417, 6724 |
| BclI | TGATCA | 4 cut(s) | 1243, 2668, 3763, 6301 |
| BcnI | CCSGG | 3 cut(s) | 2199, 3421, 3422 |
| BfmI | CTRYAG | 9 cut(s) | 909, 1101, 1843, 1958, 2411, 3728, 4060, 4218, 6216 |
| BfoI | RGCGCY | 1 cut(s) | 1966 |
| BfrI | CTTAAG | 1 cut(s) | 1817 |
| BfuAI | ACCTGC | 1 cut(s) | 7714 |
| BfuI | GTATCC | 4 cut(s) | 1305, 4346, 6417, 6724 |
| BglII | AGATCT | 2 cut(s) | 3784, 6998 |
| BlpI | GCTNAGC | 1 cut(s) | 16 |
| BmcAI | AGTACT | 1 cut(s) | 2143 |
| Bme1390I | CCNGG | 9 cut(s) | 569, 684, 1156, 2199, 3421, 3422, 3577, 5365, 6343 |
| Bme18I | GGWCC | 4 cut(s) | 1314, 3173, 7285, 7709 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1144 |
| BmeT110I | CYCGRG | 2 cut(s) | 1694, 3420 |
| BmgBI | CACGTC | 1 cut(s) | 1270 |
| BmgT120I | GGNCC | 4 cut(s) | 1314, 3173, 7285, 7709 |
| BmiI | GGNNCC | 6 cut(s) | 1052, 2449, 3132, 5667, 6239, 7287 |
| BmrFI | CCNGG | 9 cut(s) | 569, 684, 1156, 2199, 3421, 3422, 3577, 5365, 6343 |
| BmrI | ACTGGG | 2 cut(s) | 2313, 2335 |
| BmuI | ACTGGG | 2 cut(s) | 2313, 2335 |
| BoxI | GACNNNNGTC | 1 cut(s) | 4385 |
| BpiI | GAAGAC | 5 cut(s) | 824, 2535, 4631, 5577, 7469 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 7033, 7065 |
| BpmI | CTGGAG | 6 cut(s) | 231, 551, 689, 4142, 4593, 7035 |
| Bpu10I | CCTNAGC | 2 cut(s) | 692, 1928 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 16 |
| Bpu14I | TTCGAA | 3 cut(s) | 835, 2654, 5491 |
| BpuEI | CTTGAG | 6 cut(s) | 1154, 1488, 2762, 6515, 6800, 6881 |
| BpuMI | CCSGG | 3 cut(s) | 2199, 3421, 3422 |
| Bsa29I | ATCGAT | 1 cut(s) | 2433 |
| BsaAI | YACGTR | 1 cut(s) | 5264 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2446 |
| BsaHI | GRCGYC | 1 cut(s) | 985 |
| BsaI | GGTCTC | 3 cut(s) | 1081, 2007, 4019 |
| Bse118I | RCCGGY | 1 cut(s) | 1311 |
| Bse1I | ACTGG | 6 cut(s) | 2149, 2308, 2330, 4029, 7052, 7639 |
| Bse21I | CCTNAGG | 1 cut(s) | 989 |
| Bse3DI | GCAATG | 8 cut(s) | 3489, 3661, 3933, 4234, 4372, 4914, 4997, 5710 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2446 |
| BseBI | CCWGG | 6 cut(s) | 569, 684, 1156, 3577, 5365, 6343 |
| BseCI | ATCGAT | 1 cut(s) | 2433 |
| BseJI | GATNNNNATC | 1 cut(s) | 2446 |
| BseMI | GCAATG | 8 cut(s) | 3489, 3661, 3933, 4234, 4372, 4914, 4997, 5710 |
| BseNI | ACTGG | 6 cut(s) | 2149, 2308, 2330, 4029, 7052, 7639 |
| BseRI | GAGGAG | 3 cut(s) | 5633, 6928, 7403 |
| BseSI | GKGCMC | 2 cut(s) | 4323, 7048 |
| BsgI | GTGCAG | 2 cut(s) | 1292, 2721 |
| BshFI | GGCC | 4 cut(s) | 2629, 2965, 5368, 7023 |
| BshNI | GGYRCC | 2 cut(s) | 1050, 3130 |
| BshVI | ATCGAT | 1 cut(s) | 2433 |
| BsiHKAI | GWGCWC | 4 cut(s) | 4298, 4410, 6648, 7048 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1694, 3420 |
| BsiSI | CCGG | 3 cut(s) | 1312, 2198, 3421 |
| BslFI | GGGAC | 4 cut(s) | 1344, 3767, 4373, 4916 |
| BsmBI | CGTCTC | 1 cut(s) | 976 |
| BsmFI | GGGAC | 4 cut(s) | 1344, 3767, 4373, 4916 |
| BsmI | GAATGC | 7 cut(s) | 2060, 3165, 4962, 5097, 5379, 5944, 6148 |
| BsnI | GGCC | 4 cut(s) | 2629, 2965, 5368, 7023 |
| Bso31I | GGTCTC | 3 cut(s) | 1081, 2007, 4019 |
| BsoBI | CYCGRG | 2 cut(s) | 1694, 3420 |
| Bsp119I | TTCGAA | 3 cut(s) | 835, 2654, 5491 |
| Bsp1286I | GDGCHC | 7 cut(s) | 3189, 3427, 4298, 4323, 4410, 6648, 7048 |
| Bsp1407I | TGTACA | 1 cut(s) | 2043 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 16 |
| Bsp19I | CCATGG | 2 cut(s) | 6227, 7607 |
| BspACI | CCGC | 9 cut(s) | 283, 485, 1091, 1206, 1600, 2129, 2350, 5708, 6266 |
| BspANI | GGCC | 4 cut(s) | 2629, 2965, 5368, 7023 |
| BspDI | ATCGAT | 1 cut(s) | 2433 |
| BspHI | TCATGA | 3 cut(s) | 1240, 1281, 2064 |
| BspLI | GGNNCC | 6 cut(s) | 1052, 2449, 3132, 5667, 6239, 7287 |
| BspMAI | CTGCAG | 5 cut(s) | 913, 1105, 1962, 2415, 3732 |
| BspMI | ACCTGC | 1 cut(s) | 7714 |
| BspQI | GCTCTTC | 5 cut(s) | 420, 3432, 4401, 5187, 7185 |
| BspT104I | TTCGAA | 3 cut(s) | 835, 2654, 5491 |
| BspT107I | GGYRCC | 2 cut(s) | 1050, 3130 |
| BspTI | CTTAAG | 1 cut(s) | 1817 |
| BspTNI | GGTCTC | 3 cut(s) | 1081, 2007, 4019 |
| BsrDI | GCAATG | 8 cut(s) | 3489, 3661, 3933, 4234, 4372, 4914, 4997, 5710 |
| BsrFI | RCCGGY | 1 cut(s) | 1311 |
| BsrGI | TGTACA | 1 cut(s) | 2043 |
| BsrI | ACTGG | 6 cut(s) | 2149, 2308, 2330, 4029, 7052, 7639 |
| BssAI | RCCGGY | 1 cut(s) | 1311 |
| BssNAI | GTATAC | 1 cut(s) | 311 |
| BssNI | GRCGYC | 1 cut(s) | 985 |
| BssT1I | CCWWGG | 5 cut(s) | 1411, 6036, 6227, 6543, 7607 |
| Bst1107I | GTATAC | 1 cut(s) | 311 |
| Bst2UI | CCWGG | 6 cut(s) | 569, 684, 1156, 3577, 5365, 6343 |
| BstACI | GRCGYC | 1 cut(s) | 985 |
| BstAFI | CTTAAG | 1 cut(s) | 1817 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 5941, 7112 |
| BstAUI | TGTACA | 1 cut(s) | 2043 |
| BstBAI | YACGTR | 1 cut(s) | 5264 |
| BstBI | TTCGAA | 3 cut(s) | 835, 2654, 5491 |
| BstDSI | CCRYGG | 3 cut(s) | 5847, 6227, 7607 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 6017 |
| BstH2I | RGCGCY | 1 cut(s) | 1966 |
| BstHHI | GCGC | 7 cut(s) | 905, 1965, 2125, 3233, 5308, 5640, 5997 |
| BstNI | CCWGG | 6 cut(s) | 569, 684, 1156, 3577, 5365, 6343 |
| BstNSI | RCATGY | 3 cut(s) | 3824, 5939, 7356 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 4385 |
| BstSCI | CCNGG | 9 cut(s) | 567, 682, 1154, 2197, 3419, 3420, 3575, 5363, 6341 |
| BstSFI | CTRYAG | 9 cut(s) | 909, 1101, 1843, 1958, 2411, 3728, 4060, 4218, 6216 |
| BstSLI | GKGCMC | 2 cut(s) | 4323, 7048 |
| BstV2I | GAAGAC | 5 cut(s) | 824, 2535, 4631, 5577, 7469 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 256, 1894 |
| BstZ17I | GTATAC | 1 cut(s) | 311 |
| Bsu15I | ATCGAT | 1 cut(s) | 2433 |
| Bsu36I | CCTNAGG | 1 cut(s) | 989 |
| BsuI | GTATCC | 4 cut(s) | 1305, 4346, 6417, 6724 |
| BsuRI | GGCC | 4 cut(s) | 2629, 2965, 5368, 7023 |
| BsuTUI | ATCGAT | 1 cut(s) | 2433 |
| BtgI | CCRYGG | 3 cut(s) | 5847, 6227, 7607 |
| BtgZI | GCGATG | 1 cut(s) | 3883 |
| BtrI | CACGTC | 1 cut(s) | 1270 |
| BtsI | GCAGTG | 2 cut(s) | 663, 2953 |
| BveI | ACCTGC | 1 cut(s) | 7714 |
| CaiI | CAGNNNCTG | 2 cut(s) | 3334, 5021 |
| CciI | TCATGA | 3 cut(s) | 1240, 1281, 2064 |
| CfoI | GCGC | 7 cut(s) | 905, 1965, 2125, 3233, 5308, 5640, 5997 |
| Cfr10I | RCCGGY | 1 cut(s) | 1311 |
| Cfr13I | GGNCC | 4 cut(s) | 1314, 3173, 7285, 7709 |
| Cfr9I | CCCGGG | 1 cut(s) | 3420 |
| ClaI | ATCGAT | 1 cut(s) | 2433 |
| CseI | GACGC | 6 cut(s) | 993, 1134, 1652, 3251, 5832, 7230 |
| CsiI | ACCWGGT | 1 cut(s) | 1154 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 351, 386, 865, 900 |
| DraI | TTTAAA | 4 cut(s) | 1422, 2634, 4093, 4968 |
| DraIII | CACNNNGTG | 2 cut(s) | 4414, 5606 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2588 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1144 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2588 |
| EaeI | YGGCCR | 1 cut(s) | 2963 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1144 |
| Ecl136II | GAGCTC | 1 cut(s) | 4296 |
| Eco130I | CCWWGG | 5 cut(s) | 1411, 6036, 6227, 6543, 7607 |
| Eco147I | AGGCCT | 2 cut(s) | 2629, 5368 |
| Eco24I | GRGCYC | 3 cut(s) | 3189, 3427, 4298 |
| Eco31I | GGTCTC | 3 cut(s) | 1081, 2007, 4019 |
| Eco32I | GATATC | 3 cut(s) | 4845, 6903, 7215 |
| Eco47I | GGWCC | 4 cut(s) | 1314, 3173, 7285, 7709 |
| Eco47III | AGCGCT | 1 cut(s) | 1964 |
| Eco53kI | GAGCTC | 1 cut(s) | 4296 |
| Eco57I | CTGAAG | 9 cut(s) | 1179, 1923, 3725, 4998, 5261, 5796, 6542, 7130, 7590 |
| Eco72I | CACGTG | 1 cut(s) | 5264 |
| Eco81I | CCTNAGG | 1 cut(s) | 989 |
| Eco88I | CYCGRG | 2 cut(s) | 1694, 3420 |
| EcoICRI | GAGCTC | 1 cut(s) | 4296 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 6017 |
| EcoRI | GAATTC | 7 cut(s) | 182, 241, 1988, 2016, 3585, 4447, 6041 |
| EcoRII | CCWGG | 6 cut(s) | 567, 682, 1154, 3575, 5363, 6341 |
| EcoRV | GATATC | 3 cut(s) | 4845, 6903, 7215 |
| EcoT14I | CCWWGG | 5 cut(s) | 1411, 6036, 6227, 6543, 7607 |
| EcoT22I | ATGCAT | 4 cut(s) | 2463, 3773, 4305, 5937 |
| EcoT38I | GRGCYC | 3 cut(s) | 3189, 3427, 4298 |
| ErhI | CCWWGG | 5 cut(s) | 1411, 6036, 6227, 6543, 7607 |
| Esp3I | CGTCTC | 1 cut(s) | 976 |
| FaqI | GGGAC | 4 cut(s) | 1344, 3767, 4373, 4916 |
| FauI | CCCGC | 2 cut(s) | 1199, 2357 |
| FauNDI | CATATG | 4 cut(s) | 2402, 2485, 4000, 5866 |
| FbaI | TGATCA | 4 cut(s) | 1243, 2668, 3763, 6301 |
| FblI | GTMKAC | 3 cut(s) | 310, 4310, 5325 |
| FriOI | GRGCYC | 3 cut(s) | 3189, 3427, 4298 |
| FspI | TGCGCA | 2 cut(s) | 2124, 3232 |
| GlaI | GCGC | 7 cut(s) | 904, 1964, 2124, 3232, 5307, 5639, 5996 |
| GsuI | CTGGAG | 6 cut(s) | 231, 551, 689, 4142, 4593, 7035 |
| HaeII | RGCGCY | 1 cut(s) | 1966 |
| HaeIII | GGCC | 4 cut(s) | 2629, 2965, 5368, 7023 |
| HapII | CCGG | 3 cut(s) | 1312, 2198, 3421 |
| HgaI | GACGC | 6 cut(s) | 993, 1134, 1652, 3251, 5832, 7230 |
| HhaI | GCGC | 7 cut(s) | 905, 1965, 2125, 3233, 5308, 5640, 5997 |
| Hin1I | GRCGYC | 1 cut(s) | 985 |
| Hin6I | GCGC | 7 cut(s) | 903, 1963, 2123, 3231, 5306, 5638, 5995 |
| HinP1I | GCGC | 7 cut(s) | 903, 1963, 2123, 3231, 5306, 5638, 5995 |
| HincII | GTYRAC | 5 cut(s) | 877, 1515, 2272, 3889, 6198 |
| HindII | GTYRAC | 5 cut(s) | 877, 1515, 2272, 3889, 6198 |
| HindIII | AAGCTT | 5 cut(s) | 3711, 4718, 6323, 7082, 7259 |
| HpaI | GTTAAC | 1 cut(s) | 6198 |
| HpaII | CCGG | 3 cut(s) | 1312, 2198, 3421 |
| HphI | GGTGA | 7 cut(s) | 227, 599, 2591, 2788, 5684, 6081, 7154 |
| Hpy99I | CGWCG | 1 cut(s) | 1150 |
| HpyCH4IV | ACGT | 8 cut(s) | 879, 1185, 1269, 1721, 5263, 5964, 6598, 7228 |
| HpySE526I | ACGT | 8 cut(s) | 879, 1185, 1269, 1721, 5263, 5964, 6598, 7228 |
| Hsp92I | GRCGYC | 1 cut(s) | 985 |
| HspAI | GCGC | 7 cut(s) | 903, 1963, 2123, 3231, 5306, 5638, 5995 |
| KpnI | GGTACC | 1 cut(s) | 1054 |
| Ksp22I | TGATCA | 4 cut(s) | 1243, 2668, 3763, 6301 |
| KspAI | GTTAAC | 1 cut(s) | 6198 |
| LguI | GCTCTTC | 5 cut(s) | 420, 3432, 4401, 5187, 7185 |
| LmnI | GCTCC | 6 cut(s) | 228, 259, 1497, 4301, 4612, 5665 |
| MabI | ACCWGGT | 1 cut(s) | 1154 |
| MaeII | ACGT | 8 cut(s) | 879, 1185, 1269, 1721, 5263, 5964, 6598, 7228 |
| MfeI | CAATTG | 3 cut(s) | 5165, 5643, 6945 |
| MhlI | GDGCHC | 7 cut(s) | 3189, 3427, 4298, 4323, 4410, 6648, 7048 |
| MlsI | TGGCCA | 1 cut(s) | 2965 |
| MluNI | TGGCCA | 1 cut(s) | 2965 |
| MmeI | TCCRAC | 7 cut(s) | 1236, 1557, 1975, 4561, 5228, 5451, 7444 |
| Mox20I | TGGCCA | 1 cut(s) | 2965 |
| Mph1103I | ATGCAT | 4 cut(s) | 2463, 3773, 4305, 5937 |
| MroXI | GAANNNNTTC | 3 cut(s) | 4532, 5257, 6552 |
| MscI | TGGCCA | 1 cut(s) | 2965 |
| MslI | CAYNNNNRTG | 5 cut(s) | 231, 345, 2281, 2405, 4976 |
| Msp20I | TGGCCA | 1 cut(s) | 2965 |
| MspCI | CTTAAG | 1 cut(s) | 1817 |
| MspI | CCGG | 3 cut(s) | 1312, 2198, 3421 |
| MspR9I | CCNGG | 9 cut(s) | 569, 684, 1156, 2199, 3421, 3422, 3577, 5365, 6343 |
| MunI | CAATTG | 3 cut(s) | 5165, 5643, 6945 |
| Mva1269I | GAATGC | 7 cut(s) | 2060, 3165, 4962, 5097, 5379, 5944, 6148 |
| MvaI | CCWGG | 6 cut(s) | 569, 684, 1156, 3577, 5365, 6343 |
| NciI | CCSGG | 3 cut(s) | 2199, 3421, 3422 |
| NcoI | CCATGG | 2 cut(s) | 6227, 7607 |
| NdeI | CATATG | 4 cut(s) | 2402, 2485, 4000, 5866 |
| NlaIV | GGNNCC | 6 cut(s) | 1052, 2449, 3132, 5667, 6239, 7287 |
| NmeAIII | GCCGAG | 1 cut(s) | 2214 |
| NmuCI | GTSAC | 7 cut(s) | 100, 2093, 2579, 3632, 5875, 6986, 7459 |
| NsbI | TGCGCA | 2 cut(s) | 2124, 3232 |
| NsiI | ATGCAT | 4 cut(s) | 2463, 3773, 4305, 5937 |
| NspI | RCATGY | 3 cut(s) | 3824, 5939, 7356 |
| NspV | TTCGAA | 3 cut(s) | 835, 2654, 5491 |
| PaeI | GCATGC | 1 cut(s) | 7356 |
| PagI | TCATGA | 3 cut(s) | 1240, 1281, 2064 |
| PceI | AGGCCT | 2 cut(s) | 2629, 5368 |
| PciSI | GCTCTTC | 5 cut(s) | 420, 3432, 4401, 5187, 7185 |
| PctI | GAATGC | 7 cut(s) | 2060, 3165, 4962, 5097, 5379, 5944, 6148 |
| PdmI | GAANNNNTTC | 3 cut(s) | 4532, 5257, 6552 |
| PflFI | GACNNNGTC | 1 cut(s) | 7792 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2961 |
| PmaCI | CACGTG | 1 cut(s) | 5264 |
| PmlI | CACGTG | 1 cut(s) | 5264 |
| Ppu21I | YACGTR | 1 cut(s) | 5264 |
| PshAI | GACNNNNGTC | 1 cut(s) | 4385 |
| PshBI | ATTAAT | 2 cut(s) | 141, 320 |
| Psp124BI | GAGCTC | 1 cut(s) | 4298 |
| Psp1406I | AACGTT | 1 cut(s) | 879 |
| Psp6I | CCWGG | 6 cut(s) | 567, 682, 1154, 3575, 5363, 6341 |
| PspCI | CACGTG | 1 cut(s) | 5264 |
| PspGI | CCWGG | 6 cut(s) | 567, 682, 1154, 3575, 5363, 6341 |
| PspN4I | GGNNCC | 6 cut(s) | 1052, 2449, 3132, 5667, 6239, 7287 |
| PspPI | GGNCC | 4 cut(s) | 1314, 3173, 7285, 7709 |
| PstI | CTGCAG | 5 cut(s) | 913, 1105, 1962, 2415, 3732 |
| PstNI | CAGNNNCTG | 2 cut(s) | 3334, 5021 |
| PsyI | GACNNNGTC | 1 cut(s) | 7792 |
| RseI | CAYNNNNRTG | 5 cut(s) | 231, 345, 2281, 2405, 4976 |
| SacI | GAGCTC | 1 cut(s) | 4298 |
| SapI | GCTCTTC | 5 cut(s) | 420, 3432, 4401, 5187, 7185 |
| Sau96I | GGNCC | 4 cut(s) | 1314, 3173, 7285, 7709 |
| ScaI | AGTACT | 1 cut(s) | 2143 |
| ScrFI | CCNGG | 9 cut(s) | 569, 684, 1156, 2199, 3421, 3422, 3577, 5365, 6343 |
| SduI | GDGCHC | 7 cut(s) | 3189, 3427, 4298, 4323, 4410, 6648, 7048 |
| SexAI | ACCWGGT | 1 cut(s) | 1154 |
| SfcI | CTRYAG | 9 cut(s) | 909, 1101, 1843, 1958, 2411, 3728, 4060, 4218, 6216 |
| SfuI | TTCGAA | 3 cut(s) | 835, 2654, 5491 |
| SinI | GGWCC | 4 cut(s) | 1314, 3173, 7285, 7709 |
| SmaI | CCCGGG | 1 cut(s) | 3422 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 231, 345, 2281, 2405, 4976 |
| SmlI | CTYRAG | 7 cut(s) | 1133, 1503, 1817, 2741, 6494, 6779, 6896 |
| SmoI | CTYRAG | 7 cut(s) | 1133, 1503, 1817, 2741, 6494, 6779, 6896 |
| SphI | GCATGC | 1 cut(s) | 7356 |
| SseBI | AGGCCT | 2 cut(s) | 2629, 5368 |
| SsiI | CCGC | 9 cut(s) | 283, 485, 1091, 1206, 1600, 2129, 2350, 5708, 6266 |
| SspI | AATATT | 4 cut(s) | 2844, 2852, 6654, 7062 |
| SstI | GAGCTC | 1 cut(s) | 4298 |
| StuI | AGGCCT | 2 cut(s) | 2629, 5368 |
| StyD4I | CCNGG | 9 cut(s) | 567, 682, 1154, 2197, 3419, 3420, 3575, 5363, 6341 |
| StyI | CCWWGG | 5 cut(s) | 1411, 6036, 6227, 6543, 7607 |
| TaiI | ACGT | 8 cut(s) | 882, 1188, 1272, 1724, 5266, 5967, 6601, 7231 |
| TatI | WGTACW | 5 cut(s) | 591, 720, 2043, 2141, 2825 |
| TauI | GCSGC | 4 cut(s) | 286, 488, 1602, 2132 |
| TseFI | GTSAC | 7 cut(s) | 100, 2093, 2579, 3632, 5875, 6986, 7459 |
| Tsp45I | GTSAC | 7 cut(s) | 100, 2093, 2579, 3632, 5875, 6986, 7459 |
| TspGWI | ACGGA | 5 cut(s) | 1377, 1472, 4441, 5746, 6478 |
| TspMI | CCCGGG | 1 cut(s) | 3420 |
| Tth111I | GACNNNGTC | 1 cut(s) | 7792 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2961 |
| Vha464I | CTTAAG | 1 cut(s) | 1817 |
| VneI | GTGCAC | 1 cut(s) | 7044 |
| VpaK11BI | GGWCC | 4 cut(s) | 1314, 3173, 7285, 7709 |
| VspI | ATTAAT | 2 cut(s) | 141, 320 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 6017 |
| XbaI | TCTAGA | 1 cut(s) | 4559 |
| XceI | RCATGY | 3 cut(s) | 3824, 5939, 7356 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 7427 |
| XmaI | CCCGGG | 1 cut(s) | 3420 |
| XmiI | GTMKAC | 3 cut(s) | 310, 4310, 5325 |
| XmnI | GAANNNNTTC | 3 cut(s) | 4532, 5257, 6552 |
| ZrmI | AGTACT | 1 cut(s) | 2143 |
| Zsp2I | ATGCAT | 4 cut(s) | 2463, 3773, 4305, 5937 |