Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006395

Physical Location & Seq

Genomic Coordinates Forward (+)

18567511 .. 18567984

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25671.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGTTTCCATAGTCGAACTAGGAAAGCTCATCTCCCAACACCACCCCAACTTCTCCATAACAGTCCTGGTGGACACATCTTCCCCTCTTGCCAAATCCTCCCACATCAACCATCTCCTCTCTTCTGATTCAGATCAAACCTCCATCTCCTTCTTCACTCTCCCCTCACTCAACCTCCCCCTTCCCGACGCCCAAACCCGACCCGAATGCTTGATCCAGCTCATGACACAATCTGTCCCCAATGTCCTCCAAGCCCTCAACACCATCTCTCTCACTTCCAAAGTTCTCGCCTTCATCACGTCGGCAGTGCATCACCCATACCACCCTGACATCCCAACTTACTATTACTTCACCTCATGCGCCTCTGTTCTTGCTCTGTTTCTCTACCTCCCTACTATCCATGATCAAACGGTGGAAAGCTTCAAGGACCTGAACGACACCGTTGTGGACTTTCCGGGATTGCCAGCGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

158

Amino Acids

17.28

Weight (kDa)

5.4

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006395)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25671 FvH4_3g25680
prunus_persica	Prupe.6G136900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0046041 RchiOBHm_Chr5g0046051
rosa_laevigata	RLG00000034387 RLG00000034392 RLG00000034563 RLG00000034568
rosa_multiflora	Rmu_co8238891.1_g000001 Rmu_sc0001035.1_g000030 Rmu_sc0001035.1_g000034 Rmu_sc0001035.1_g000047 Rmu_sc0001035.1_g000051
rosa_roxburghii	Rroxscaffold_1G00035340
rosa_rugosa	Rorug05G0226000 Rorug05G0226100
rosa_samantha	Rh4BG171700 Rh5AG306600 Rh5AG306700 Rh5BG315300 Rh5BG315400 Rh5CG341500 Rh5CG341600 Rh5DG325400
rosa_wichuraiana	Rw5G028680 Rw5G028700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	208
AcyI	GRCGYC	1 cut(s)	189
AfeI	AGCGCT	1 cut(s)	468
AgsI	TTSAA	1 cut(s)	424
AjiI	CACGTC	1 cut(s)	300
AjnI	CCWGG	1 cut(s)	66
AleI	CACNNNNGTG	1 cut(s)	443
AluBI	AGCT	3 cut(s)	28, 220, 420
AluI	AGCT	3 cut(s)	28, 220, 420
AlwI	GGATC	1 cut(s)	208
Aor51HI	AGCGCT	1 cut(s)	468
AspLEI	GCGC	2 cut(s)	362, 469
AspS9I	GGNCC	1 cut(s)	427
AsuC2I	CCSGG	1 cut(s)	456
AsuHPI	GGTGA	2 cut(s)	305, 343
AvaII	GGWCC	1 cut(s)	427
BccI	CCATC	3 cut(s)	120, 152, 272
BcgI	CGANNNNNNTGC	2 cut(s)	189, 223
BciT130I	CCWGG	1 cut(s)	68
BclI	TGATCA	1 cut(s)	403
BcnI	CCSGG	1 cut(s)	456
BfaI	CTAG	1 cut(s)	20
BfoI	RGCGCY	1 cut(s)	470
Bme1390I	CCNGG	2 cut(s)	68, 456
Bme18I	GGWCC	1 cut(s)	427
BmgBI	CACGTC	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	427
BmrFI	CCNGG	2 cut(s)	68, 456
BmsI	GCATC	1 cut(s)	319
BpuMI	CCSGG	1 cut(s)	456
BsaBI	GATNNNNATC	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bse8I	GATNNNNATC	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	68
BseGI	GGATG	1 cut(s)	330
BseJI	GATNNNNATC	1 cut(s)	132
BseRI	GAGGAG	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	455
BslFI	GGGAC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	212
Bsp143I	GATC	3 cut(s)	133, 213, 403
BspHI	TCATGA	1 cut(s)	222
BspPI	GGATC	1 cut(s)	208
BssMI	GATC	3 cut(s)	133, 213, 403
BssNI	GRCGYC	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	3 cut(s)	64, 412, 442
Bst6I	CTCTTC	1 cut(s)	127
BstACI	GRCGYC	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	465
BstF5I	GGATG	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	2 cut(s)	362, 469
BstKTI	GATC	3 cut(s)	136, 216, 406
BstMBI	GATC	3 cut(s)	133, 213, 403
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	2 cut(s)	66, 454
BtrI	CACGTC	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	330
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	1 cut(s)	465
CciI	TCATGA	1 cut(s)	222
CfoI	GCGC	2 cut(s)	362, 469
Cfr13I	GGNCC	1 cut(s)	427
CseI	GACGC	1 cut(s)	197
CviAII	CATG	3 cut(s)	223, 357, 401
CviJI	RGCY	4 cut(s)	28, 220, 254, 420
CviKI_1	RGCY	4 cut(s)	28, 220, 254, 420
DpnI	GATC	3 cut(s)	135, 215, 405
DpnII	GATC	3 cut(s)	133, 213, 403
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	427
Eco47III	AGCGCT	1 cut(s)	468
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	66
FaeI	CATG	3 cut(s)	226, 360, 404
FaiI	YATR	6 cut(s)	11, 59, 224, 319, 358, 402
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	3 cut(s)	222, 356, 400
FbaI	TGATCA	1 cut(s)	403
FokI	GGATG	1 cut(s)	317
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	2 cut(s)	361, 468
HaeII	RGCGCY	1 cut(s)	470
HapII	CCGG	1 cut(s)	455
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	2 cut(s)	362, 469
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	3 cut(s)	226, 360, 404
Hin6I	GCGC	2 cut(s)	360, 467
HinP1I	GCGC	2 cut(s)	360, 467
HindIII	AAGCTT	1 cut(s)	418
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	2 cut(s)	305, 343
Hpy166II	GTNNAC	2 cut(s)	73, 448
Hpy188I	TCNGA	3 cut(s)	127, 133, 473
Hpy188III	TCNNGA	2 cut(s)	185, 223
Hpy8I	GTNNAC	2 cut(s)	73, 448
Hpy99I	CGWCG	2 cut(s)	191, 304
HpyAV	CCTTC	3 cut(s)	160, 191, 301
HpyCH4III	ACNGT	3 cut(s)	64, 412, 442
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	1 cut(s)	310
HpySE526I	ACGT	1 cut(s)	299
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	3 cut(s)	226, 360, 404
HspAI	GCGC	2 cut(s)	360, 467
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	3 cut(s)	133, 213, 403
LpnPI	CCDG	6 cut(s)	53, 80, 230, 339, 443, 468
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	299
MalI	GATC	3 cut(s)	135, 215, 405
MboI	GATC	3 cut(s)	133, 213, 403
MboII	GAAGA	3 cut(s)	72, 114, 145
MslI	CAYNNNNRTG	1 cut(s)	443
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	2 cut(s)	68, 456
Mva1269I	GAATGC	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	68
NciI	CCSGG	1 cut(s)	456
NdeII	GATC	3 cut(s)	133, 213, 403
NlaIII	CATG	3 cut(s)	226, 360, 404
OliI	CACNNNNGTG	1 cut(s)	443
PagI	TCATGA	1 cut(s)	222
PctI	GAATGC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	128
PfoI	TCCNGGA	1 cut(s)	454
PpuMI	RGGWCCY	1 cut(s)	427
Psp5II	RGGWCCY	1 cut(s)	427
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	427
PspPPI	RGGWCCY	1 cut(s)	427
RseI	CAYNNNNRTG	1 cut(s)	443
Sau3AI	GATC	3 cut(s)	133, 213, 403
Sau96I	GGNCC	1 cut(s)	427
ScrFI	CCNGG	2 cut(s)	68, 456
SetI	ASST	9 cut(s)	30, 143, 177, 222, 302, 356, 390, 422, 432
SfaNI	GCATC	1 cut(s)	319
SinI	GGWCC	1 cut(s)	427
SmiMI	CAYNNNNRTG	1 cut(s)	443
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	2 cut(s)	66, 454
TaaI	ACNGT	3 cut(s)	64, 412, 442
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	128
TscAI	CASTG	1 cut(s)	312
TspDTI	ATGAA	1 cut(s)	283
TspRI	CASTG	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.