Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001035.1

Orthogroup ID

OG0006395

Physical Location & Seq

Genomic Coordinates Forward (+)

165971 .. 166771

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001035.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atggcggaaatgaaacaaagcatagtgttatacccagcatcacctgggtcgcaccacatggtttccatagttgaactaggaaaactcatctcccaacgccaccccaacttgtccataacagtcttgctcgacacatcttcccctctcgccaaatcctcatacatcaaccatcttctctcttctaactctgatcccgatcaagcccgcatctccttcttcactctccccgcactcaacctcccccaacccgacgcccaaaccagacccgattgcgtacaccaactcaggcttcaaactgtccccaacgtcctccaagccctcaagaccatctctctcacttccaaagtcctcgcctttatcacgtcactatggcatcacccttacgaccctgaaatcccaacttactattacttcacctcctgcgcctctgttcttgctctgtttctgtacttccccactatccatgatcaaacgccggagagcttcaaggacggaaacgacgacgttgttgagtctccgggattgccagcgctccgaggctcccaattgccggatcctattctcgaccgcaacgaggctgaatatgatttctttctctattttgcttcctgtcttgcaaaagcgaagggaattataacaaacaccttccaagaacttgagcctcgagcaatcaaggccataaaggacggtgtttgtgttcctaatcatcaaaccccgccgttatatcacatcgggccgttgatttccgactctgaaaataggtcgatccaaggcggttcgcctatgccaactaagaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

266

Amino Acids

29.47

Weight (kDa)

5.89

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006395)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25671 FvH4_3g25680
prunus_persica	Prupe.6G136900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0046041 RchiOBHm_Chr5g0046051
rosa_laevigata	RLG00000034387 RLG00000034392 RLG00000034563 RLG00000034568
rosa_multiflora	Rmu_co8238891.1_g000001 Rmu_sc0001035.1_g000030 Rmu_sc0001035.1_g000034 Rmu_sc0001035.1_g000047 Rmu_sc0001035.1_g000051
rosa_roxburghii	Rroxscaffold_1G00035340
rosa_rugosa	Rorug05G0226000 Rorug05G0226100
rosa_samantha	Rh4BG171700 Rh5AG306600 Rh5AG306700 Rh5BG315300 Rh5BG315400 Rh5CG341500 Rh5CG341600 Rh5DG325400
rosa_wichuraiana	Rw5G028680 Rw5G028700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	635
AciI	CCGC	6 cut(s)	5, 205, 228, 568, 716, 774
AclWI	GGATC	4 cut(s)	185, 548, 561, 760
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	2 cut(s)	276, 449
AfeI	AGCGCT	1 cut(s)	531
AfiI	CCNNNNNNNGG	2 cut(s)	550, 574
AgsI	TTSAA	3 cut(s)	74, 293, 487
AjiI	CACGTC	1 cut(s)	363
AjnI	CCWGG	1 cut(s)	43
AjuI	GAANNNNNNNTTGG	2 cut(s)	273, 305
AluBI	AGCT	1 cut(s)	483
AluI	AGCT	1 cut(s)	483
Alw26I	GTCTC	1 cut(s)	519
AlwI	GGATC	4 cut(s)	185, 548, 561, 760
Ama87I	CYCGRG	1 cut(s)	663
Aor51HI	AGCGCT	1 cut(s)	531
AoxI	GGCC	2 cut(s)	675, 734
AspLEI	GCGC	2 cut(s)	425, 532
AspS9I	GGNCC	1 cut(s)	734
AsuC2I	CCSGG	1 cut(s)	519
AsuHPI	GGTGA	3 cut(s)	33, 368, 406
AvaI	CYCGRG	1 cut(s)	663
BamHI	GGATCC	1 cut(s)	553
BccI	CCATC	2 cut(s)	177, 335
BceAI	ACGGC	2 cut(s)	703, 721
BciT130I	CCWGG	1 cut(s)	45
BclI	TGATCA	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	519
BcoDI	GTCTC	1 cut(s)	519
BfaI	CTAG	1 cut(s)	77
BfoI	RGCGCY	1 cut(s)	533
Bme1390I	CCNGG	2 cut(s)	45, 519
BmeT110I	CYCGRG	1 cut(s)	663
BmgBI	CACGTC	1 cut(s)	363
BmgT120I	GGNCC	1 cut(s)	734
BmiI	GGNNCC	2 cut(s)	541, 555
BmrFI	CCNGG	2 cut(s)	45, 519
BmsI	GCATC	3 cut(s)	47, 216, 382
BpuEI	CTTGAG	2 cut(s)	305, 677
BpuMI	CCSGG	1 cut(s)	519
BsaBI	GATNNNNATC	1 cut(s)	195
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	3 cut(s)	44, 535, 769
BsaXI	ACNNNNNCTCC	4 cut(s)	222, 252, 401, 431
Bsc4I	CCNNNNNNNGG	2 cut(s)	550, 574
Bse8I	GATNNNNATC	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	3 cut(s)	44, 535, 769
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	2 cut(s)	550, 574
BseMII	CTCAG	1 cut(s)	298
BseYI	CCCAGC	1 cut(s)	34
Bsh1285I	CGRYCG	1 cut(s)	568
BshFI	GGCC	2 cut(s)	677, 736
BsiEI	CGRYCG	1 cut(s)	568
BsiHKCI	CYCGRG	1 cut(s)	663
BsiSI	CCGG	3 cut(s)	476, 518, 551
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	2 cut(s)	550, 574
BsmAI	GTCTC	1 cut(s)	519
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	677, 736
BsoBI	CYCGRG	1 cut(s)	663
Bsp143I	GATC	5 cut(s)	190, 196, 466, 553, 765
BspACI	CCGC	6 cut(s)	5, 205, 228, 568, 716, 774
BspANI	GGCC	2 cut(s)	677, 736
BspCNI	CTCAG	1 cut(s)	297
BspLI	GGNNCC	2 cut(s)	541, 555
BspPI	GGATC	4 cut(s)	185, 548, 561, 760
BssECI	CCNNGG	3 cut(s)	44, 535, 769
BssMI	GATC	5 cut(s)	190, 196, 466, 553, 765
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	769
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	3 cut(s)	121, 298, 689
Bst6I	CTCTTC	1 cut(s)	184
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	2 cut(s)	205, 528
BstDEI	CTNAG	2 cut(s)	284, 792
BstH2I	RGCGCY	1 cut(s)	533
BstHHI	GCGC	2 cut(s)	425, 532
BstKTI	GATC	5 cut(s)	193, 199, 469, 556, 768
BstMAI	GTCTC	1 cut(s)	519
BstMBI	GATC	5 cut(s)	190, 196, 466, 553, 765
BstMCI	CGRYCG	1 cut(s)	568
BstMWI	GCNNNNNNNGC	1 cut(s)	674
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	2 cut(s)	43, 517
BstX2I	RGATCY	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	553
BsuRI	GGCC	2 cut(s)	677, 736
BtrI	CACGTC	1 cut(s)	363
Cac8I	GCNNGC	2 cut(s)	205, 528
CfoI	GCGC	2 cut(s)	425, 532
Cfr13I	GGNCC	1 cut(s)	734
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	275, 448
CviAII	CATG	2 cut(s)	58, 464
CviJI	RGCY	9 cut(s)	203, 289, 317, 483, 540, 578, 661, 677, 736
CviKI_1	RGCY	9 cut(s)	203, 289, 317, 483, 540, 578, 661, 677, 736
CviQI	GTAC	2 cut(s)	275, 448
DdeI	CTNAG	2 cut(s)	284, 792
DpnI	GATC	5 cut(s)	192, 198, 468, 555, 767
DpnII	GATC	5 cut(s)	190, 196, 466, 553, 765
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	769
Eco47III	AGCGCT	1 cut(s)	531
Eco88I	CYCGRG	1 cut(s)	663
EcoRII	CCWGG	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	769
ErhI	CCWWGG	1 cut(s)	769
FaeI	CATG	2 cut(s)	61, 467
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	2 cut(s)	57, 463
FauI	CCCGC	3 cut(s)	212, 235, 723
FbaI	TGATCA	1 cut(s)	466
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	2 cut(s)	424, 531
GsaI	CCCAGC	1 cut(s)	38
HaeII	RGCGCY	1 cut(s)	533
HaeIII	GGCC	2 cut(s)	677, 736
HapII	CCGG	3 cut(s)	476, 518, 551
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	2 cut(s)	425, 532
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	2 cut(s)	61, 467
Hin6I	GCGC	2 cut(s)	423, 530
HinP1I	GCGC	2 cut(s)	423, 530
HinfI	GANTC	2 cut(s)	512, 749
HpaII	CCGG	3 cut(s)	476, 518, 551
HphI	GGTGA	3 cut(s)	33, 368, 406
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	4 cut(s)	190, 536, 748, 754
Hpy188III	TCNNGA	3 cut(s)	194, 322, 563
Hpy8I	GTNNAC	1 cut(s)	277
Hpy99I	CGWCG	3 cut(s)	254, 503, 506
HpyAV	CCTTC	3 cut(s)	223, 619, 655
HpyCH4III	ACNGT	3 cut(s)	121, 298, 689
HpyCH4IV	ACGT	3 cut(s)	306, 362, 504
HpyCH4V	TGCA	1 cut(s)	617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	674
HpyF3I	CTNAG	2 cut(s)	284, 792
HpySE526I	ACGT	3 cut(s)	306, 362, 504
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	61, 467
HspAI	GCGC	2 cut(s)	423, 530
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	5 cut(s)	190, 196, 466, 553, 765
LmnI	GCTCC	2 cut(s)	537, 545
LweI	GCATC	3 cut(s)	47, 216, 382
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	3 cut(s)	306, 362, 504
MaeIII	GTNAC	1 cut(s)	363
MalI	GATC	5 cut(s)	192, 198, 468, 555, 767
MboI	GATC	5 cut(s)	190, 196, 466, 553, 765
MboII	GAAGA	4 cut(s)	129, 164, 171, 208
MfeI	CAATTG	1 cut(s)	545
MflI	RGATCY	1 cut(s)	553
MluCI	AATT	3 cut(s)	545, 630, 796
MlyI	GAGTC	2 cut(s)	521, 743
MmeI	TCCRAC	1 cut(s)	771
MseI	TTAA	1 cut(s)	799
MspI	CCGG	3 cut(s)	476, 518, 551
MspR9I	CCNGG	2 cut(s)	45, 519
MunI	CAATTG	1 cut(s)	545
MvaI	CCWGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	674
NciI	CCSGG	1 cut(s)	519
NdeII	GATC	5 cut(s)	190, 196, 466, 553, 765
NlaIII	CATG	2 cut(s)	61, 467
NlaIV	GGNNCC	2 cut(s)	541, 555
NmuCI	GTSAC	1 cut(s)	363
PaeR7I	CTCGAG	1 cut(s)	663
PcsI	WCGNNNNNNNCGW	2 cut(s)	498, 570
PfoI	TCCNGGA	1 cut(s)	517
PleI	GAGTC	2 cut(s)	520, 743
PpsI	GAGTC	2 cut(s)	520, 743
PsiI	TTATAA	1 cut(s)	635
Psp6I	CCWGG	1 cut(s)	43
PspFI	CCCAGC	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	2 cut(s)	541, 555
PspPI	GGNCC	1 cut(s)	734
PspXI	VCTCGAGB	1 cut(s)	663
PsuI	RGATCY	1 cut(s)	553
RsaI	GTAC	2 cut(s)	276, 449
RsaNI	GTAC	2 cut(s)	275, 448
SaqAI	TTAA	1 cut(s)	799
Sau3AI	GATC	5 cut(s)	190, 196, 466, 553, 765
Sau96I	GGNCC	1 cut(s)	734
SchI	GAGTC	2 cut(s)	521, 743
ScrFI	CCNGG	2 cut(s)	45, 519
SetI	ASST	9 cut(s)	46, 240, 309, 365, 419, 485, 507, 647, 764
SfaNI	GCATC	3 cut(s)	47, 216, 382
Sfr274I	CTCGAG	1 cut(s)	663
SlaI	CTCGAG	1 cut(s)	663
SmlI	CTYRAG	3 cut(s)	320, 656, 663
SmoI	CTYRAG	3 cut(s)	320, 656, 663
Sse9I	AATT	3 cut(s)	545, 630, 796
SsiI	CCGC	6 cut(s)	5, 205, 228, 568, 716, 774
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	43, 517
StyI	CCWWGG	1 cut(s)	769
TaaI	ACNGT	3 cut(s)	121, 298, 689
TaiI	ACGT	3 cut(s)	309, 365, 507
TaqI	TCGA	4 cut(s)	129, 564, 664, 764
TasI	AATT	3 cut(s)	545, 630, 796
TatI	WGTACW	1 cut(s)	447
Tru1I	TTAA	1 cut(s)	799
Tru9I	TTAA	1 cut(s)	799
TseFI	GTSAC	1 cut(s)	363
Tsp45I	GTSAC	1 cut(s)	363
TspDTI	ATGAA	1 cut(s)	26
TspGWI	ACGGA	1 cut(s)	507
XhoI	CTCGAG	1 cut(s)	663
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.