Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006395

Physical Location & Seq

Genomic Coordinates Forward (+)

18568639 .. 18570166

Gene Structure 1528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGATTACTTTCTCTATTTTGGCTTCATGTCTTCCAAAAGCAGAGGGTATTATAACCAACACATTCGTAGAACTTGAGCCTCAAGCAATCAAGGCCATAAAGGAAGGTGTTTGTGTTCCTAATGATCAAACTCCGCCGTTGTATCACATCGGACAGTTGATTTCCAACTCTGAAAATGGGCCTACCGGTCAAGGTTCGATGTTGTGGCTGGATGAGCAGCCGAGCCGGAGTGCGGTGTTCTTGTGCTTTGGAAGCAAAGGTGCGTTTTCTAAAGAGCAGTTTAAGGAAATGGCTGTAGGGTTGGAGAGAAGTAACCAGAGATTTTTGTGGGTTGTGAGGAGTCAACTGGAGTTGGAGGTACTGCTACTAGAAGGGTTCTTGGAGAGGACCAAAGATAGAGGTCTTGTAGTCAAGTCTTGGGCGCCACAGGTTGCGATTCTTAGCCATGAATCTGTGGGAAGTGAACAGTGTGGTGTTGGTGGAGGAAATGAAATTGGCAATACCGATATTTGGGGAGCCGTCGAAGTCAAACAAGGGTTGGTGAGTGCAGAGGAGGTGGAGAAGAAGGTGGGGAGGTTGATGGACATGGATTCGGAGGGGAAAAGTCTAAGAGAAAGGTGTCAAGCTGTCAAGGCAATGGGTTTGGCTGCTTGGAGAAATGGGGGTTCATCTTTCACTTCTTTTTCAGAGCTGGATCTGAGGGTTCCTGTAATGCATAAGAATCCAGAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

245

Amino Acids

26.72

Weight (kDa)

5.28

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006395)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25671 FvH4_3g25680
prunus_persica	Prupe.6G136900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0046041 RchiOBHm_Chr5g0046051
rosa_laevigata	RLG00000034387 RLG00000034392 RLG00000034563 RLG00000034568
rosa_multiflora	Rmu_co8238891.1_g000001 Rmu_sc0001035.1_g000030 Rmu_sc0001035.1_g000034 Rmu_sc0001035.1_g000047 Rmu_sc0001035.1_g000051
rosa_roxburghii	Rroxscaffold_1G00035340
rosa_rugosa	Rorug05G0226000 Rorug05G0226100
rosa_samantha	Rh4BG171700 Rh5AG306600 Rh5AG306700 Rh5BG315300 Rh5BG315400 Rh5CG341500 Rh5CG341600 Rh5DG325400
rosa_wichuraiana	Rw5G028680 Rw5G028700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	421
AciI	CCGC	2 cut(s)	134, 233
AclWI	GGATC	1 cut(s)	702
AcyI	GRCGYC	1 cut(s)	422
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	2 cut(s)	232, 510
AgeI	ACCGGT	1 cut(s)	185
AluBI	AGCT	2 cut(s)	626, 691
AluI	AGCT	2 cut(s)	626, 691
AlwI	GGATC	1 cut(s)	702
AoxI	GGCC	2 cut(s)	93, 179
ApeKI	GCWGC	2 cut(s)	217, 647
AsiGI	ACCGGT	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	2 cut(s)	179, 387
AsuHPI	GGTGA	1 cut(s)	553
AvaII	GGWCC	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	229, 634
BccI	CCATC	1 cut(s)	574
BceAI	ACGGC	2 cut(s)	121, 503
BclI	TGATCA	1 cut(s)	124
BfaI	CTAG	1 cut(s)	368
BfmI	CTRYAG	1 cut(s)	294
BfoI	RGCGCY	1 cut(s)	425
BisI	GCNGC	2 cut(s)	218, 648
BlsI	GCNGC	2 cut(s)	219, 649
Bme18I	GGWCC	1 cut(s)	387
BmgT120I	GGNCC	2 cut(s)	179, 387
BmiI	GGNNCC	3 cut(s)	423, 517, 705
BpiI	GAAGAC	1 cut(s)	23
BpmI	CTGGAG	1 cut(s)	368
BpuEI	CTTGAG	2 cut(s)	66, 95
BsaHI	GRCGYC	1 cut(s)	422
BsaWI	WCCGGW	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 510
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	351
Bse3DI	GCAATG	1 cut(s)	642
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	2 cut(s)	232, 510
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	1 cut(s)	689
BseNI	ACTGG	1 cut(s)	351
BseRI	GAGGAG	2 cut(s)	352, 566
BseXI	GCAGC	2 cut(s)	229, 634
BsgI	GTGCAG	1 cut(s)	567
BshFI	GGCC	2 cut(s)	95, 181
BshNI	GGYRCC	1 cut(s)	421
BshTI	ACCGGT	1 cut(s)	185
BsiSI	CCGG	2 cut(s)	186, 226
BslI	CCNNNNNNNGG	2 cut(s)	232, 510
BsnI	GGCC	2 cut(s)	95, 181
Bsp143I	GATC	2 cut(s)	124, 694
BspACI	CCGC	2 cut(s)	134, 233
BspANI	GGCC	2 cut(s)	95, 181
BspCNI	CTCAG	1 cut(s)	690
BspLI	GGNNCC	3 cut(s)	423, 517, 705
BspPI	GGATC	1 cut(s)	702
BspT107I	GGYRCC	1 cut(s)	421
BsrDI	GCAATG	1 cut(s)	642
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	351
BssAI	RCCGGY	1 cut(s)	185
BssMI	GATC	2 cut(s)	124, 694
BssNI	GRCGYC	1 cut(s)	422
Bst4CI	ACNGT	2 cut(s)	156, 468
BstACI	GRCGYC	1 cut(s)	422
BstDEI	CTNAG	3 cut(s)	440, 608, 698
BstF5I	GGATG	1 cut(s)	217
BstH2I	RGCGCY	1 cut(s)	425
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	2 cut(s)	127, 697
BstMBI	GATC	2 cut(s)	124, 694
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 214, 252, 632
BstSFI	CTRYAG	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	229, 634
BstV2I	GAAGAC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	694
BsuRI	GGCC	2 cut(s)	95, 181
BtsCI	GGATG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	473
CfoI	GCGC	1 cut(s)	424
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	2 cut(s)	179, 387
Csp6I	GTAC	1 cut(s)	359
CspAI	ACCGGT	1 cut(s)	185
CviAII	CATG	3 cut(s)	27, 446, 586
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	3 cut(s)	440, 608, 698
DinI	GGCGCC	1 cut(s)	423
DpnI	GATC	2 cut(s)	126, 696
DpnII	GATC	2 cut(s)	124, 694
EciI	GGCGGA	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	387
EcoT22I	ATGCAT	1 cut(s)	717
EgeI	GGCGCC	1 cut(s)	423
EheI	GGCGCC	1 cut(s)	423
FaeI	CATG	3 cut(s)	30, 449, 589
FaiI	YATR	6 cut(s)	28, 53, 98, 447, 587, 717
FatI	CATG	3 cut(s)	26, 445, 585
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	2 cut(s)	218, 648
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	2 cut(s)	218, 648
FspBI	CTAG	1 cut(s)	368
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	2 cut(s)	218, 648
GsuI	CTGGAG	1 cut(s)	368
HaeII	RGCGCY	1 cut(s)	425
HaeIII	GGCC	2 cut(s)	95, 181
HapII	CCGG	2 cut(s)	186, 226
HhaI	GCGC	1 cut(s)	424
Hin1I	GRCGYC	1 cut(s)	422
Hin1II	CATG	3 cut(s)	30, 449, 589
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HincII	GTYRAC	1 cut(s)	344
HindII	GTYRAC	1 cut(s)	344
HinfI	GANTC	5 cut(s)	340, 436, 449, 590, 721
HpaII	CCGG	2 cut(s)	186, 226
HphI	GGTGA	1 cut(s)	553
Hpy166II	GTNNAC	2 cut(s)	344, 464
Hpy188I	TCNGA	5 cut(s)	152, 172, 595, 688, 699
Hpy188III	TCNNGA	1 cut(s)	725
Hpy8I	GTNNAC	2 cut(s)	344, 464
Hpy99I	CGWCG	1 cut(s)	524
HpyAV	CCTTC	3 cut(s)	98, 365, 559
HpyCH4III	ACNGT	2 cut(s)	156, 468
HpyCH4V	TGCA	2 cut(s)	548, 715
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 214, 252, 632
HpyF3I	CTNAG	3 cut(s)	440, 608, 698
Hsp92I	GRCGYC	1 cut(s)	422
Hsp92II	CATG	3 cut(s)	30, 449, 589
HspAI	GCGC	1 cut(s)	422
KasI	GGCGCC	1 cut(s)	421
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	124, 694
LmnI	GCTCC	1 cut(s)	515
LpnPI	CCDG	8 cut(s)	194, 199, 239, 329, 332, 413, 677, 720
Lsp1109I	GCAGC	2 cut(s)	229, 634
MaeI	CTAG	1 cut(s)	368
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	2 cut(s)	126, 696
MboI	GATC	2 cut(s)	124, 694
MboII	GAAGA	2 cut(s)	23, 574
MflI	RGATCY	1 cut(s)	694
MluCI	AATT	1 cut(s)	492
Mly113I	GGCGCC	1 cut(s)	422
MlyI	GAGTC	1 cut(s)	349
MmeI	TCCRAC	3 cut(s)	189, 282, 333
Mph1103I	ATGCAT	1 cut(s)	717
MseI	TTAA	1 cut(s)	282
MspI	CCGG	2 cut(s)	186, 226
MwoI	GCNNNNNNNGC	4 cut(s)	92, 214, 252, 632
NarI	GGCGCC	1 cut(s)	422
NdeII	GATC	2 cut(s)	124, 694
NlaIII	CATG	3 cut(s)	30, 449, 589
NlaIV	GGNNCC	3 cut(s)	423, 517, 705
NmeAIII	GCCGAG	1 cut(s)	246
NsiI	ATGCAT	1 cut(s)	717
PfeI	GAWTC	4 cut(s)	436, 449, 590, 721
PinAI	ACCGGT	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	219, 649
PleI	GAGTC	1 cut(s)	348
PluTI	GGCGCC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	348
PsiI	TTATAA	1 cut(s)	53
PspN4I	GGNNCC	3 cut(s)	423, 517, 705
PspPI	GGNCC	2 cut(s)	179, 387
PsuI	RGATCY	1 cut(s)	694
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	2 cut(s)	218, 648
Sau3AI	GATC	2 cut(s)	124, 694
Sau96I	GGNCC	2 cut(s)	179, 387
SchI	GAGTC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	294
SfoI	GGCGCC	1 cut(s)	423
SinI	GGWCC	1 cut(s)	387
SmlI	CTYRAG	2 cut(s)	74, 81
SmoI	CTYRAG	2 cut(s)	74, 81
Sse9I	AATT	1 cut(s)	492
SsiI	CCGC	2 cut(s)	134, 233
SspDI	GGCGCC	1 cut(s)	421
SspMI	CTAG	1 cut(s)	368
TaaI	ACNGT	2 cut(s)	156, 468
TaqI	TCGA	2 cut(s)	197, 522
TasI	AATT	1 cut(s)	492
TfiI	GAWTC	4 cut(s)	436, 449, 590, 721
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	473
TseI	GCWGC	2 cut(s)	217, 647
TspDTI	ATGAA	4 cut(s)	15, 462, 504, 657
TspRI	CASTG	1 cut(s)	473
VpaK11BI	GGWCC	1 cut(s)	387
XspI	CTAG	1 cut(s)	368
Zsp2I	ATGCAT	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.