Rw5G028700

UDP-glucoronosyl and UDP-glucosyl transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0006395
Physical Location & Seq
Reverse (-)
43521952 .. 43523355
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G028700.1

Sequence Viewer

Length: 1404 bp
ATGGCGGAAATGAAACAAAGCATAGTGCTATATCCAGCATCACCTGGATCGCACTACTTGGGTTCCACAGTCGAACTAGGAAAGCTCATCTCCCAACGCCACCCCAACTTCTCCATCATAGTCTTGGTCGACACATCTTCCCCTAAAGCTCTAGCCAATTCCTCATACATCAACCATCTTCTCTCTTCTGATCAAACCTCCATCTCCTTCTTCACTCTCCCCTCCCTCAATCTCCCCCACCCCGACGCCCAACCCAAACTCGAATACTTCTTAACTGTCCCCAATGTCGTCCAAGCCCTCAAGACAATCTCTCTCACTTCCAAAGTCCTCGCCTTCATCACGTCAGCAGTGCAACAGTACCCTAACGACCCGGAAATCCCAACTTACTATTACTTCCCCTCTTGCGCCTCTGTTCTTGCTCTGTTTCTGTACCTCCCCACTTTCCATGATCAAACGCCGGAGAGCTTCAAGGACCTAAACGACGACGTTGTGGAGTTTCCGGGATTGCCAGCGCTCCGAGGCTCGCAAATGCCGGATCCTATTCTCGACCGCAACGAGGCTGGATATGATCACTATCTCCATATGGCTTCCTGTCTTCCAAAAGCGAAGGGAATTATAATAAACACCATCCAAGAACTTGAGCCTCGAGCAATCAAGGCCATAAAGGAAGGTGTTTGTGTTCCTAATCATCGAACTCCGCCGTTATATCACATCGGACCGTTCATTTCCGATCGCGACTCTGAAAATAGGTCGATCCAAGGCGGTTCGCCTATGCCAACTAACTGTTCCACGTTGTTATGGCTGGATGAGCAGCCGAGCCGGAGTGTGGTGTACCTGTGCTTTGGAAGCAGAGGTACGTTTTCTGAAGAGCAGTTTAAGGAATTGGCTTTAGGCTTGGAGAGAAGCAAGTTGAGATTTTTGTGGGTTGTGAGGAGTCAGCTGGATTTGGAGGTACTGCTACCCCAAGGGTTCTTGGAGAGGACCAAAGATAGAGGTCTTGTAGTCACGTCTTGGGCGCCACAGGTTGCTATTCTAAGTCATGAATCTGTGGGTGGGTTTGTGACTCACTGTGGGTGGAACTCGATCACTGAAGCAGTGACTTATGGAGTGCCTATGGTGTCTTGGCCTTTGTATTCCGGGCAGCAAGTGAACAGTGTGGTGTTGGTGGAGGAAATGAAGCTGGCAATACCGATATTTGAGGTGCTGTCCAAGTCAAAACAAGGGTTGGTGAGTGCAGATGAGGTTGAGAAGAAGGTGTTGCGGTTGATGGACATGGAGTCGGAAGAAGGGAAAAGTCTTAGAGAAAGGTGTCAAGCTGTCAAGGCAATGGGTTTGGCTGCTTGGAGAAATGGTGGCTCATCCTTCACTTCTTTTTCAGAGCTGGTAAGTTCTTGGATGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

467

Amino Acids

51.91

Weight (kDa)

5.78

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 270 - 412 6.8e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 617
AccB1I GGYRCC 1 cut(s) 1015
AccI GTMKAC 1 cut(s) 129
AccII CGCG 1 cut(s) 735
AciI CCGC 5 cut(s) 5, 550, 698, 762, 1261
AclWI GGATC 4 cut(s) 55, 530, 543, 748
AcuI CTGAAG 2 cut(s) 885, 1110
AcyI GRCGYC 2 cut(s) 246, 1016
AfaI GTAC 5 cut(s) 359, 431, 833, 856, 954
AfeI AGCGCT 1 cut(s) 513
AfiI CCNNNNNNNGG 2 cut(s) 556, 826
AgsI TTSAA 1 cut(s) 469
AhdI GACNNNNNGTC 1 cut(s) 1276
AjiI CACGTC 2 cut(s) 342, 1008
AjnI CCWGG 1 cut(s) 43
AjuI GAANNNNNNNTTGG 2 cut(s) 769, 801
AluBI AGCT 7 cut(s) 85, 149, 465, 940, 1180, 1316, 1381
AluI AGCT 7 cut(s) 85, 149, 465, 940, 1180, 1316, 1381
AlwI GGATC 4 cut(s) 55, 530, 543, 748
Ama87I CYCGRG 1 cut(s) 645
Aor51HI AGCGCT 1 cut(s) 513
AoxI GGCC 2 cut(s) 657, 1124
ApeKI GCWGC 3 cut(s) 811, 1141, 1337
AspLEI GCGC 3 cut(s) 407, 514, 1018
AspS9I GGNCC 3 cut(s) 472, 716, 981
AsuC2I CCSGG 3 cut(s) 371, 501, 1138
AsuHPI GGTGA 2 cut(s) 33, 1240
AvaI CYCGRG 1 cut(s) 645
AvaII GGWCC 3 cut(s) 472, 716, 981
BamHI GGATCC 1 cut(s) 535
BanI GGYRCC 1 cut(s) 1015
BarI GAAGNNNNNNTAC 2 cut(s) 838, 870
BbsI GAAGAC 1 cut(s) 587
BbvI GCAGC 3 cut(s) 823, 1153, 1324
BccI CCATC 5 cut(s) 122, 183, 209, 635, 1261
BceAI ACGGC 1 cut(s) 685
BciT130I CCWGG 1 cut(s) 45
BclI TGATCA 3 cut(s) 190, 448, 568
BcnI CCSGG 3 cut(s) 371, 501, 1138
BfaI CTAG 2 cut(s) 77, 152
BfoI RGCGCY 2 cut(s) 515, 1019
BisI GCNGC 3 cut(s) 812, 1142, 1338
BlsI GCNGC 3 cut(s) 813, 1143, 1339
Bme1390I CCNGG 4 cut(s) 45, 371, 501, 1138
Bme18I GGWCC 3 cut(s) 472, 716, 981
BmeRI GACNNNNNGTC 1 cut(s) 1276
BmeT110I CYCGRG 1 cut(s) 645
BmgBI CACGTC 2 cut(s) 342, 1008
BmgT120I GGNCC 3 cut(s) 472, 716, 981
BmiI GGNNCC 3 cut(s) 64, 537, 1017
BmrFI CCNGG 4 cut(s) 45, 371, 501, 1138
BmsI GCATC 2 cut(s) 47, 1386
BpiI GAAGAC 1 cut(s) 587
BpuEI CTTGAG 2 cut(s) 284, 659
BpuMI CCSGG 3 cut(s) 371, 501, 1138
BsaBI GATNNNNATC 1 cut(s) 573
BsaHI GRCGYC 2 cut(s) 246, 1016
BsaJI CCNNGG 3 cut(s) 517, 757, 964
BsaXI ACNNNNNCTCC 2 cut(s) 1336, 1366
Bsc4I CCNNNNNNNGG 2 cut(s) 556, 826
Bse3DI GCAATG 1 cut(s) 1332
Bse8I GATNNNNATC 1 cut(s) 573
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 3 cut(s) 517, 757, 964
BseGI GGATG 4 cut(s) 627, 811, 1358, 1401
BseJI GATNNNNATC 1 cut(s) 573
BseLI CCNNNNNNNGG 2 cut(s) 556, 826
BseMI GCAATG 1 cut(s) 1332
BseRI GAGGAG 1 cut(s) 946
BseXI GCAGC 3 cut(s) 823, 1153, 1324
BsgI GTGCAG 1 cut(s) 1254
Bsh1236I CGCG 1 cut(s) 735
Bsh1285I CGRYCG 2 cut(s) 550, 733
BshFI GGCC 2 cut(s) 659, 1126
BshNI GGYRCC 1 cut(s) 1015
BsiEI CGRYCG 2 cut(s) 550, 733
BsiHKCI CYCGRG 1 cut(s) 645
BsiSI CCGG 6 cut(s) 371, 458, 500, 533, 820, 1137
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 2 cut(s) 556, 826
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 2 cut(s) 659, 1126
BsoBI CYCGRG 1 cut(s) 645
Bsp143I GATC 8 cut(s) 47, 190, 448, 535, 568, 730, 753, 1083
Bsp68I TCGCGA 1 cut(s) 735
BspACI CCGC 5 cut(s) 5, 550, 698, 762, 1261
BspANI GGCC 2 cut(s) 659, 1126
BspFNI CGCG 1 cut(s) 735
BspHI TCATGA 1 cut(s) 1039
BspLI GGNNCC 3 cut(s) 64, 537, 1017
BspPI GGATC 4 cut(s) 55, 530, 543, 748
BspQI GCTCTTC 1 cut(s) 861
BspT107I GGYRCC 1 cut(s) 1015
BsrDI GCAATG 1 cut(s) 1332
BssECI CCNNGG 3 cut(s) 517, 757, 964
BssMI GATC 8 cut(s) 47, 190, 448, 535, 568, 730, 753, 1083
BssNI GRCGYC 2 cut(s) 246, 1016
BssT1I CCWWGG 2 cut(s) 757, 964
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 7 cut(s) 70, 277, 357, 720, 785, 1070, 1154
Bst6I CTCTTC 2 cut(s) 190, 861
BstACI GRCGYC 2 cut(s) 246, 1016
BstC8I GCNNGC 3 cut(s) 510, 524, 1182
BstDEI CTNAG 2 cut(s) 1034, 1298
BstF5I GGATG 4 cut(s) 627, 811, 1358, 1401
BstFNI CGCG 1 cut(s) 735
BstH2I RGCGCY 2 cut(s) 515, 1019
BstHHI GCGC 3 cut(s) 407, 514, 1018
BstKTI GATC 8 cut(s) 50, 193, 451, 538, 571, 733, 756, 1086
BstMBI GATC 8 cut(s) 47, 190, 448, 535, 568, 730, 753, 1083
BstMCI CGRYCG 2 cut(s) 550, 733
BstMWI GCNNNNNNNGC 4 cut(s) 656, 808, 846, 1322
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 4 cut(s) 43, 369, 499, 1136
BstUI CGCG 1 cut(s) 735
BstV1I GCAGC 3 cut(s) 823, 1153, 1324
BstV2I GAAGAC 1 cut(s) 587
BstX2I RGATCY 1 cut(s) 535
BstYI RGATCY 1 cut(s) 535
BsuRI GGCC 2 cut(s) 659, 1126
BtrI CACGTC 2 cut(s) 342, 1008
BtsCI GGATG 4 cut(s) 627, 811, 1358, 1401
BtsI GCAGTG 2 cut(s) 354, 1101
BtsIMutI CAGTG 5 cut(s) 354, 1066, 1086, 1101, 1159
BtuMI TCGCGA 1 cut(s) 735
Cac8I GCNNGC 3 cut(s) 510, 524, 1182
CciI TCATGA 1 cut(s) 1039
CfoI GCGC 3 cut(s) 407, 514, 1018
Cfr13I GGNCC 3 cut(s) 472, 716, 981
CpoI CGGWCCG 1 cut(s) 716
CseI GACGC 1 cut(s) 254
Csp6I GTAC 5 cut(s) 358, 430, 832, 855, 953
CspI CGGWCCG 1 cut(s) 716
CviAII CATG 3 cut(s) 446, 1040, 1273
CviQI GTAC 5 cut(s) 358, 430, 832, 855, 953
DdeI CTNAG 2 cut(s) 1034, 1298
DinI GGCGCC 1 cut(s) 1017
DpnI GATC 8 cut(s) 49, 192, 450, 537, 570, 732, 755, 1085
DpnII GATC 8 cut(s) 47, 190, 448, 535, 568, 730, 753, 1083
DriI GACNNNNNGTC 1 cut(s) 1276
Eam1104I CTCTTC 2 cut(s) 190, 861
Eam1105I GACNNNNNGTC 1 cut(s) 1276
EarI CTCTTC 2 cut(s) 190, 861
EciI GGCGGA 2 cut(s) 20, 687
Eco130I CCWWGG 2 cut(s) 757, 964
Eco47I GGWCC 3 cut(s) 472, 716, 981
Eco47III AGCGCT 1 cut(s) 513
Eco57I CTGAAG 2 cut(s) 885, 1110
Eco88I CYCGRG 1 cut(s) 645
EcoO109I RGGNCCY 1 cut(s) 472
EcoRII CCWGG 1 cut(s) 43
EcoT14I CCWWGG 2 cut(s) 757, 964
EgeI GGCGCC 1 cut(s) 1017
EheI GGCGCC 1 cut(s) 1017
ErhI CCWWGG 2 cut(s) 757, 964
FaeI CATG 3 cut(s) 449, 1043, 1276
FaqI GGGAC 1 cut(s) 263
FatI CATG 3 cut(s) 445, 1039, 1272
FauNDI CATATG 1 cut(s) 582
FbaI TGATCA 3 cut(s) 190, 448, 568
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 3 cut(s) 812, 1142, 1338
FokI GGATG 3 cut(s) 614, 818, 1345
Fsp4HI GCNGC 3 cut(s) 812, 1142, 1338
FspBI CTAG 2 cut(s) 77, 152
GlaI GCGC 3 cut(s) 406, 513, 1017
GluI GCNGC 3 cut(s) 812, 1142, 1338
HaeII RGCGCY 2 cut(s) 515, 1019
HaeIII GGCC 2 cut(s) 659, 1126
HapII CCGG 6 cut(s) 371, 458, 500, 533, 820, 1137
HgaI GACGC 1 cut(s) 254
HhaI GCGC 3 cut(s) 407, 514, 1018
Hin1I GRCGYC 2 cut(s) 246, 1016
Hin1II CATG 3 cut(s) 449, 1043, 1276
Hin6I GCGC 3 cut(s) 405, 512, 1016
HinP1I GCGC 3 cut(s) 405, 512, 1016
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 5 cut(s) 737, 934, 1043, 1063, 1277
HpaII CCGG 6 cut(s) 371, 458, 500, 533, 820, 1137
HphI GGTGA 2 cut(s) 33, 1240
Hpy166II GTNNAC 3 cut(s) 130, 832, 1150
Hpy188I TCNGA 8 cut(s) 190, 518, 716, 730, 742, 865, 1282, 1378
Hpy188III TCNNGA 4 cut(s) 301, 545, 734, 1040
Hpy8I GTNNAC 3 cut(s) 130, 832, 1150
Hpy99I CGWCG 3 cut(s) 248, 485, 488
HpyAV CCTTC 7 cut(s) 217, 343, 601, 662, 1246, 1280, 1372
HpyCH4III ACNGT 7 cut(s) 70, 277, 357, 720, 785, 1070, 1154
HpyCH4IV ACGT 5 cut(s) 341, 486, 791, 857, 1007
HpyCH4V TGCA 3 cut(s) 352, 1235, 1399
HpyF10VI GCNNNNNNNGC 4 cut(s) 656, 808, 846, 1322
HpyF3I CTNAG 2 cut(s) 1034, 1298
HpySE526I ACGT 5 cut(s) 341, 486, 791, 857, 1007
Hsp92I GRCGYC 2 cut(s) 246, 1016
Hsp92II CATG 3 cut(s) 449, 1043, 1276
HspAI GCGC 3 cut(s) 405, 512, 1016
KasI GGCGCC 1 cut(s) 1015
Ksp22I TGATCA 3 cut(s) 190, 448, 568
Kzo9I GATC 8 cut(s) 47, 190, 448, 535, 568, 730, 753, 1083
LguI GCTCTTC 1 cut(s) 861
LmnI GCTCC 1 cut(s) 519
Lsp1109I GCAGC 3 cut(s) 823, 1153, 1324
LweI GCATC 2 cut(s) 47, 1386
MaeI CTAG 2 cut(s) 77, 152
MaeII ACGT 5 cut(s) 341, 486, 791, 857, 1007
MaeIII GTNAC 3 cut(s) 1003, 1060, 1096
MalI GATC 8 cut(s) 49, 192, 450, 537, 570, 732, 755, 1085
MboI GATC 8 cut(s) 47, 190, 448, 535, 568, 730, 753, 1083
MboII GAAGA 8 cut(s) 129, 170, 177, 202, 587, 878, 1261, 1295
MflI RGATCY 1 cut(s) 535
MluCI AATT 3 cut(s) 157, 612, 881
Mly113I GGCGCC 1 cut(s) 1016
MlyI GAGTC 4 cut(s) 731, 943, 1057, 1286
MmeI TCCRAC 1 cut(s) 1260
MseI TTAA 2 cut(s) 272, 876
MspA1I CMGCKG 1 cut(s) 940
MspI CCGG 6 cut(s) 371, 458, 500, 533, 820, 1137
MspR9I CCNGG 4 cut(s) 45, 371, 501, 1138
MvaI CCWGG 1 cut(s) 45
MvnI CGCG 1 cut(s) 735
MwoI GCNNNNNNNGC 4 cut(s) 656, 808, 846, 1322
NarI GGCGCC 1 cut(s) 1016
NciI CCSGG 3 cut(s) 371, 501, 1138
NdeI CATATG 1 cut(s) 582
NdeII GATC 8 cut(s) 47, 190, 448, 535, 568, 730, 753, 1083
NlaIII CATG 3 cut(s) 449, 1043, 1276
NlaIV GGNNCC 3 cut(s) 64, 537, 1017
NmeAIII GCCGAG 1 cut(s) 840
NmuCI GTSAC 3 cut(s) 1003, 1060, 1096
NruI TCGCGA 1 cut(s) 735
PaeR7I CTCGAG 1 cut(s) 645
PagI TCATGA 1 cut(s) 1039
PciSI GCTCTTC 1 cut(s) 861
PcsI WCGNNNNNNNCGW 1 cut(s) 552
PfeI GAWTC 1 cut(s) 1043
PfoI TCCNGGA 1 cut(s) 499
PkrI GCNGC 3 cut(s) 813, 1143, 1339
Ple19I CGATCG 1 cut(s) 733
PleI GAGTC 4 cut(s) 731, 942, 1057, 1285
PluTI GGCGCC 1 cut(s) 1019
PpsI GAGTC 4 cut(s) 731, 942, 1057, 1285
PpuMI RGGWCCY 1 cut(s) 472
PsiI TTATAA 1 cut(s) 617
Psp5II RGGWCCY 1 cut(s) 472
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 3 cut(s) 64, 537, 1017
PspPI GGNCC 3 cut(s) 472, 716, 981
PspPPI RGGWCCY 1 cut(s) 472
PspXI VCTCGAGB 1 cut(s) 645
PsuI RGATCY 1 cut(s) 535
PvuI CGATCG 1 cut(s) 733
PvuII CAGCTG 1 cut(s) 940
RruI TCGCGA 1 cut(s) 735
RsaI GTAC 5 cut(s) 359, 431, 833, 856, 954
RsaNI GTAC 5 cut(s) 358, 430, 832, 855, 953
Rsr2I CGGWCCG 1 cut(s) 716
RsrII CGGWCCG 1 cut(s) 716
SalI GTCGAC 1 cut(s) 128
SapI GCTCTTC 1 cut(s) 861
SaqAI TTAA 2 cut(s) 272, 876
SatI GCNGC 3 cut(s) 812, 1142, 1338
Sau3AI GATC 8 cut(s) 47, 190, 448, 535, 568, 730, 753, 1083
Sau96I GGNCC 3 cut(s) 472, 716, 981
SchI GAGTC 4 cut(s) 731, 943, 1057, 1286
ScrFI CCNGG 4 cut(s) 45, 371, 501, 1138
SfaNI GCATC 2 cut(s) 47, 1386
SfoI GGCGCC 1 cut(s) 1017
Sfr274I CTCGAG 1 cut(s) 645
SinI GGWCC 3 cut(s) 472, 716, 981
SlaI CTCGAG 1 cut(s) 645
SmlI CTYRAG 3 cut(s) 299, 638, 645
SmoI CTYRAG 3 cut(s) 299, 638, 645
Sse9I AATT 3 cut(s) 157, 612, 881
SsiI CCGC 5 cut(s) 5, 550, 698, 762, 1261
SspDI GGCGCC 1 cut(s) 1015
SspMI CTAG 2 cut(s) 77, 152
StyD4I CCNGG 4 cut(s) 43, 369, 499, 1136
StyI CCWWGG 2 cut(s) 757, 964
TaaI ACNGT 7 cut(s) 70, 277, 357, 720, 785, 1070, 1154
TaiI ACGT 5 cut(s) 344, 489, 794, 860, 1010
TaqI TCGA 8 cut(s) 72, 129, 261, 546, 646, 691, 752, 1082
TasI AATT 3 cut(s) 157, 612, 881
TfiI GAWTC 1 cut(s) 1043
Tru1I TTAA 2 cut(s) 272, 876
Tru9I TTAA 2 cut(s) 272, 876
TscAI CASTG 5 cut(s) 354, 1073, 1093, 1101, 1159
TseFI GTSAC 3 cut(s) 1003, 1060, 1096
TseI GCWGC 3 cut(s) 811, 1141, 1337
Tsp45I GTSAC 3 cut(s) 1003, 1060, 1096
TspDTI ATGAA 5 cut(s) 26, 325, 712, 1056, 1190
TspRI CASTG 5 cut(s) 354, 1073, 1093, 1101, 1159
VpaK11BI GGWCC 3 cut(s) 472, 716, 981
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
XhoI CTCGAG 1 cut(s) 645
XmiI GTMKAC 1 cut(s) 129
XspI CTAG 2 cut(s) 77, 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.