Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8238891.1

Orthogroup ID

OG0006395

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 769

Gene Structure 769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8238891.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ccaattcctcatacatcaaccatcttctctcttctgatcaaacctccatctccttcttcactctcccctccctcaatctcccccaccccgacgcccaacccaaactcgaatacttcttaactgtccccaatgtcgtccaagccctcaagacaatctctctcacttccaaagtcctcgccttcatcacgtcagcagtgcaacagtaccctaacgacccggaaatcccaacttactattacttcccctcttgcgcctctgttcttgctctgtttctgtacctccccactttccatgatcaaacgccggagagcttcaaggacctaaacgacgacgttgtggagtttccgggattgccagcgctccgaggctcgcaaatgccggatcctattctcgaccgcaacgaggctggatatgatcactatctccatatggtttcctgtcttccaaaagcgaagggaattataataaacaccatccaagaacttgagcctcgagcaatcaaggccataaaggaaggtatttgtgttcctaatcatcgaactccgccgttatatcacatcggaccgttcatttccgatcgcgactctgaaaataggtcgatccaaggcggttcgcctatgccaactaactgttccacgttgttatggctggatgagcagccgagccggagtgtggtgtacctgtgctttggaagcagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

232

Amino Acids

25.97

Weight (kDa)

5.42

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006395)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25671 FvH4_3g25680
prunus_persica	Prupe.6G136900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0046041 RchiOBHm_Chr5g0046051
rosa_laevigata	RLG00000034387 RLG00000034392 RLG00000034563 RLG00000034568
rosa_multiflora	Rmu_co8238891.1_g000001 Rmu_sc0001035.1_g000030 Rmu_sc0001035.1_g000034 Rmu_sc0001035.1_g000047 Rmu_sc0001035.1_g000051
rosa_roxburghii	Rroxscaffold_1G00035340
rosa_rugosa	Rorug05G0226000 Rorug05G0226100
rosa_samantha	Rh4BG171700 Rh5AG306600 Rh5AG306700 Rh5BG315300 Rh5BG315400 Rh5CG341500 Rh5CG341600 Rh5DG325400
rosa_wichuraiana	Rw5G028680 Rw5G028700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	463
AccII	CGCG	1 cut(s)	581
AciI	CCGC	3 cut(s)	396, 544, 608
AclWI	GGATC	3 cut(s)	376, 389, 594
AcyI	GRCGYC	1 cut(s)	92
AfaI	GTAC	3 cut(s)	205, 277, 679
AfeI	AGCGCT	1 cut(s)	359
AfiI	CCNNNNNNNGG	2 cut(s)	402, 672
AgsI	TTSAA	1 cut(s)	315
AjiI	CACGTC	1 cut(s)	188
AjuI	GAANNNNNNNTTGG	2 cut(s)	615, 647
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
AlwI	GGATC	3 cut(s)	376, 389, 594
Ama87I	CYCGRG	1 cut(s)	491
Aor51HI	AGCGCT	1 cut(s)	359
AoxI	GGCC	1 cut(s)	503
ApeKI	GCWGC	1 cut(s)	657
AspLEI	GCGC	2 cut(s)	253, 360
AspS9I	GGNCC	2 cut(s)	318, 562
AsuC2I	CCSGG	2 cut(s)	217, 347
AvaI	CYCGRG	1 cut(s)	491
AvaII	GGWCC	2 cut(s)	318, 562
BamHI	GGATCC	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	433
BbvI	GCAGC	1 cut(s)	669
BccI	CCATC	3 cut(s)	29, 55, 481
BceAI	ACGGC	1 cut(s)	531
BclI	TGATCA	3 cut(s)	36, 294, 414
BcnI	CCSGG	2 cut(s)	217, 347
BfoI	RGCGCY	1 cut(s)	361
BisI	GCNGC	1 cut(s)	658
BlsI	GCNGC	1 cut(s)	659
Bme1390I	CCNGG	2 cut(s)	217, 347
Bme18I	GGWCC	2 cut(s)	318, 562
BmeT110I	CYCGRG	1 cut(s)	491
BmgBI	CACGTC	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	318, 562
BmiI	GGNNCC	1 cut(s)	383
BmrFI	CCNGG	2 cut(s)	217, 347
BpiI	GAAGAC	1 cut(s)	433
BpuEI	CTTGAG	2 cut(s)	130, 505
BpuMI	CCSGG	2 cut(s)	217, 347
BsaBI	GATNNNNATC	1 cut(s)	419
BsaHI	GRCGYC	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	363, 603
Bsc4I	CCNNNNNNNGG	2 cut(s)	402, 672
Bse8I	GATNNNNATC	1 cut(s)	419
BseDI	CCNNGG	2 cut(s)	363, 603
BseGI	GGATG	2 cut(s)	473, 657
BseJI	GATNNNNATC	1 cut(s)	419
BseLI	CCNNNNNNNGG	2 cut(s)	402, 672
BseXI	GCAGC	1 cut(s)	669
Bsh1236I	CGCG	1 cut(s)	581
Bsh1285I	CGRYCG	2 cut(s)	396, 579
BshFI	GGCC	1 cut(s)	505
BsiEI	CGRYCG	2 cut(s)	396, 579
BsiHKCI	CYCGRG	1 cut(s)	491
BsiSI	CCGG	5 cut(s)	217, 304, 346, 379, 666
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	2 cut(s)	402, 672
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	505
BsoBI	CYCGRG	1 cut(s)	491
Bsp143I	GATC	6 cut(s)	36, 294, 381, 414, 576, 599
Bsp68I	TCGCGA	1 cut(s)	581
BspACI	CCGC	3 cut(s)	396, 544, 608
BspANI	GGCC	1 cut(s)	505
BspFNI	CGCG	1 cut(s)	581
BspLI	GGNNCC	1 cut(s)	383
BspPI	GGATC	3 cut(s)	376, 389, 594
BssECI	CCNNGG	2 cut(s)	363, 603
BssMI	GATC	6 cut(s)	36, 294, 381, 414, 576, 599
BssNI	GRCGYC	1 cut(s)	92
BssT1I	CCWWGG	1 cut(s)	603
Bst4CI	ACNGT	4 cut(s)	123, 203, 566, 631
Bst6I	CTCTTC	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	356, 370
BstF5I	GGATG	2 cut(s)	473, 657
BstFNI	CGCG	1 cut(s)	581
BstH2I	RGCGCY	1 cut(s)	361
BstHHI	GCGC	2 cut(s)	253, 360
BstKTI	GATC	6 cut(s)	39, 297, 384, 417, 579, 602
BstMBI	GATC	6 cut(s)	36, 294, 381, 414, 576, 599
BstMCI	CGRYCG	2 cut(s)	396, 579
BstMWI	GCNNNNNNNGC	3 cut(s)	502, 654, 692
BstSCI	CCNGG	2 cut(s)	215, 345
BstUI	CGCG	1 cut(s)	581
BstV1I	GCAGC	1 cut(s)	669
BstV2I	GAAGAC	1 cut(s)	433
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	505
BtrI	CACGTC	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	473, 657
BtsI	GCAGTG	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	200
BtuMI	TCGCGA	1 cut(s)	581
Cac8I	GCNNGC	2 cut(s)	356, 370
CfoI	GCGC	2 cut(s)	253, 360
Cfr13I	GGNCC	2 cut(s)	318, 562
CpoI	CGGWCCG	1 cut(s)	562
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	204, 276, 678
CspI	CGGWCCG	1 cut(s)	562
CviAII	CATG	1 cut(s)	292
CviJI	RGCY	9 cut(s)	142, 311, 368, 406, 489, 505, 648, 660, 665
CviKI_1	RGCY	9 cut(s)	142, 311, 368, 406, 489, 505, 648, 660, 665
CviQI	GTAC	3 cut(s)	204, 276, 678
DpnI	GATC	6 cut(s)	38, 296, 383, 416, 578, 601
DpnII	GATC	6 cut(s)	36, 294, 381, 414, 576, 599
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
EciI	GGCGGA	1 cut(s)	533
Eco130I	CCWWGG	1 cut(s)	603
Eco47I	GGWCC	2 cut(s)	318, 562
Eco47III	AGCGCT	1 cut(s)	359
Eco88I	CYCGRG	1 cut(s)	491
EcoO109I	RGGNCCY	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	603
ErhI	CCWWGG	1 cut(s)	603
FaeI	CATG	1 cut(s)	295
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	1 cut(s)	291
FauNDI	CATATG	1 cut(s)	428
FbaI	TGATCA	3 cut(s)	36, 294, 414
Fnu4HI	GCNGC	1 cut(s)	658
FokI	GGATG	2 cut(s)	460, 664
Fsp4HI	GCNGC	1 cut(s)	658
GlaI	GCGC	2 cut(s)	252, 359
GluI	GCNGC	1 cut(s)	658
HaeII	RGCGCY	1 cut(s)	361
HaeIII	GGCC	1 cut(s)	505
HapII	CCGG	5 cut(s)	217, 304, 346, 379, 666
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	2 cut(s)	253, 360
Hin1I	GRCGYC	1 cut(s)	92
Hin1II	CATG	1 cut(s)	295
Hin6I	GCGC	2 cut(s)	251, 358
HinP1I	GCGC	2 cut(s)	251, 358
HinfI	GANTC	1 cut(s)	583
HpaII	CCGG	5 cut(s)	217, 304, 346, 379, 666
Hpy166II	GTNNAC	1 cut(s)	678
Hpy188I	TCNGA	5 cut(s)	36, 364, 562, 576, 588
Hpy188III	TCNNGA	3 cut(s)	147, 391, 580
Hpy8I	GTNNAC	1 cut(s)	678
Hpy99I	CGWCG	3 cut(s)	94, 331, 334
HpyAV	CCTTC	4 cut(s)	63, 189, 447, 508
HpyCH4III	ACNGT	4 cut(s)	123, 203, 566, 631
HpyCH4IV	ACGT	3 cut(s)	187, 332, 637
HpyCH4V	TGCA	1 cut(s)	198
HpyF10VI	GCNNNNNNNGC	3 cut(s)	502, 654, 692
HpySE526I	ACGT	3 cut(s)	187, 332, 637
Hsp92I	GRCGYC	1 cut(s)	92
Hsp92II	CATG	1 cut(s)	295
HspAI	GCGC	2 cut(s)	251, 358
Ksp22I	TGATCA	3 cut(s)	36, 294, 414
Kzo9I	GATC	6 cut(s)	36, 294, 381, 414, 576, 599
LmnI	GCTCC	1 cut(s)	365
Lsp1109I	GCAGC	1 cut(s)	669
MaeII	ACGT	3 cut(s)	187, 332, 637
MalI	GATC	6 cut(s)	38, 296, 383, 416, 578, 601
MboI	GATC	6 cut(s)	36, 294, 381, 414, 576, 599
MboII	GAAGA	4 cut(s)	16, 23, 48, 433
MflI	RGATCY	1 cut(s)	381
MluCI	AATT	2 cut(s)	3, 458
MlyI	GAGTC	1 cut(s)	577
MseI	TTAA	1 cut(s)	118
MspI	CCGG	5 cut(s)	217, 304, 346, 379, 666
MspR9I	CCNGG	2 cut(s)	217, 347
MvnI	CGCG	1 cut(s)	581
MwoI	GCNNNNNNNGC	3 cut(s)	502, 654, 692
NciI	CCSGG	2 cut(s)	217, 347
NdeI	CATATG	1 cut(s)	428
NdeII	GATC	6 cut(s)	36, 294, 381, 414, 576, 599
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	1 cut(s)	383
NmeAIII	GCCGAG	1 cut(s)	686
NruI	TCGCGA	1 cut(s)	581
PaeR7I	CTCGAG	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	1 cut(s)	398
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	1 cut(s)	659
Ple19I	CGATCG	1 cut(s)	579
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
PpuMI	RGGWCCY	1 cut(s)	318
PsiI	TTATAA	1 cut(s)	463
Psp5II	RGGWCCY	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	383
PspPI	GGNCC	2 cut(s)	318, 562
PspPPI	RGGWCCY	1 cut(s)	318
PspXI	VCTCGAGB	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	381
PvuI	CGATCG	1 cut(s)	579
RruI	TCGCGA	1 cut(s)	581
RsaI	GTAC	3 cut(s)	205, 277, 679
RsaNI	GTAC	3 cut(s)	204, 276, 678
Rsr2I	CGGWCCG	1 cut(s)	562
RsrII	CGGWCCG	1 cut(s)	562
SaqAI	TTAA	1 cut(s)	118
SatI	GCNGC	1 cut(s)	658
Sau3AI	GATC	6 cut(s)	36, 294, 381, 414, 576, 599
Sau96I	GGNCC	2 cut(s)	318, 562
SchI	GAGTC	1 cut(s)	577
ScrFI	CCNGG	2 cut(s)	217, 347
Sfr274I	CTCGAG	1 cut(s)	491
SinI	GGWCC	2 cut(s)	318, 562
SlaI	CTCGAG	1 cut(s)	491
SmlI	CTYRAG	3 cut(s)	145, 484, 491
SmoI	CTYRAG	3 cut(s)	145, 484, 491
Sse9I	AATT	2 cut(s)	3, 458
SsiI	CCGC	3 cut(s)	396, 544, 608
StyD4I	CCNGG	2 cut(s)	215, 345
StyI	CCWWGG	1 cut(s)	603
TaaI	ACNGT	4 cut(s)	123, 203, 566, 631
TaiI	ACGT	3 cut(s)	190, 335, 640
TaqI	TCGA	5 cut(s)	107, 392, 492, 537, 598
TasI	AATT	2 cut(s)	3, 458
Tru1I	TTAA	1 cut(s)	118
Tru9I	TTAA	1 cut(s)	118
TscAI	CASTG	1 cut(s)	200
TseI	GCWGC	1 cut(s)	657
TspDTI	ATGAA	2 cut(s)	171, 558
TspRI	CASTG	1 cut(s)	200
VpaK11BI	GGWCC	2 cut(s)	318, 562
XhoI	CTCGAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.