Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006395

Physical Location & Seq

Genomic Coordinates Reverse (-)

11075966 .. 11077342

Gene Structure 1377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G136900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGGTAGAATTAGCAAAGCTAATCTCCCAACACCATCCCAACTTGCCCATAACAATTCTACTCACAACTTCCACACCTTTTGAAACCTCCACCACATCCTCCTCTTACATCAACCTCATCTCATCTGATCAAAACCAAACCAACCCCAATCTCCCAATCTCCTTCTTCACCCTCCCCTCCCTTCATCTTCACCAATCCCACATCGAAAACCCTGTAGAATCCGCAATCGAATTCATGCGTCTCAACATCCCCAATGTCCTCCAAGCCCTCGAAACCATTTCACAAAGTTCAAAAGTCTTAGCCTTTATCACCTCCTCCGTCCACCACCCATATGACCCTCAAATCCCAACCTACTTCTACTTCACCTCCTGCGCCTCTGCTCTTGCTCTCTTTCTCTACCTACCCACCATCCACAACCAAACACCCAAGAGCTTCAGAGACCTAAACGACGCCGTCCTCCACTTCCCCGGATTGCCACCTCTCCGAGCCTCCCAAATGCCCCTGCCTCTTCTCGACCGCAGCGGCCCTGCATACGAGTACTTTCTCAACTTCGCTGCTTGTCTTCCAAAATCACAGGGAATTATAACAAACACCTTCCAAGCACTCGAGCCATCTGCAATCAAAGCCATAAGCGATAATTCTTGCGTTCCAAATCATCAAACCCCGCCAATATTCCACATCGGGCCGTTGAATTTCGATGCTAAAAATCGGGCTTCAAGTGTCTGCGAAGACAGGTCAACTTCAACCAAGTGTTTGATGTGGTTGGATGAGCAGCCGAGCCAGAGCGTCGTCTTCTTGTGCTTCGGGAGCAGAGGTGCGCTCTCCGAAGCACAATTAAGCGAGATTGCCATGGGTTTGGAGAGAAGCAAACAGAGATTCTTGTGGGTCGTGAGAAGCCCTCCGGGTTCGAGCTCGGTTGAGCCGGATCTGGAGATTCTGCTACCCAAAGAGTTCTTGGAGAGGACCAAAAACAGAGGCCTGGTAGTGAAGTCGTGGGCTCCACAGGCTGCTATTTTGCGCCATGGATGTGTAGGTGGGTTTGTGACTCATTGTGGGTGGAATTCAGTGCTTGAAGCAGTGACCTACGGGGTGCCAATGGCGGCGTGGCCTTTGTATGCAGAGCAGGCGGTAAATGGTGTTGTTTTGGTGGAGGAGATGAAGCTGGGGATACCAGTTGAGTCAAAAGAAGGGTTTGTGAGTGCAGAGGAAGTGGAGAAGAAGGTGTCGCTGTTGATGGATGGGAAAAGTCTGAGAGAACGAAGTCAAGCTATGAAAGCAATGGCTTTGGCTGCTTGGAACAATGGTGGGTCTTCGTTCACTAGTTTTTCTGAGATGGTAACTTCTTGGAAGCAAATAGCAGTGCCACGTTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

459

Amino Acids

50.49

Weight (kDa)

6.24

Isoelectric Point (pI)

54.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006395)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25671 FvH4_3g25680
prunus_persica	Prupe.6G136900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0046041 RchiOBHm_Chr5g0046051
rosa_laevigata	RLG00000034387 RLG00000034392 RLG00000034563 RLG00000034568
rosa_multiflora	Rmu_co8238891.1_g000001 Rmu_sc0001035.1_g000030 Rmu_sc0001035.1_g000034 Rmu_sc0001035.1_g000047 Rmu_sc0001035.1_g000051
rosa_roxburghii	Rroxscaffold_1G00035340
rosa_rugosa	Rorug05G0226000 Rorug05G0226100
rosa_samantha	Rh4BG171700 Rh5AG306600 Rh5AG306700 Rh5BG315300 Rh5BG315400 Rh5CG341500 Rh5CG341600 Rh5DG325400
rosa_wichuraiana	Rw5G028680 Rw5G028700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
AccB1I	GGYRCC	1 cut(s)	1090
AciI	CCGC	6 cut(s)	222, 517, 522, 665, 1100, 1127
AclWI	GGATC	1 cut(s)	933
AcsI	RAATTY	3 cut(s)	230, 691, 1060
AcuI	CTGAAG	1 cut(s)	418
AcyI	GRCGYC	1 cut(s)	450
AfaI	GTAC	1 cut(s)	539
AgsI	TTSAA	6 cut(s)	83, 291, 691, 717, 744, 1073
AhlI	ACTAGT	1 cut(s)	1319
AjnI	CCWGG	1 cut(s)	978
AluBI	AGCT	5 cut(s)	19, 432, 912, 1162, 1268
AluI	AGCT	5 cut(s)	19, 432, 912, 1162, 1268
Alw21I	GWGCWC	1 cut(s)	914
Alw26I	GTCTC	2 cut(s)	245, 432
AlwI	GGATC	1 cut(s)	933
Ama87I	CYCGRG	1 cut(s)	605
AoxI	GGCC	4 cut(s)	523, 683, 976, 1106
ApeKI	GCWGC	5 cut(s)	519, 554, 772, 1007, 1289
ApoI	RAATTY	3 cut(s)	230, 691, 1060
AspLEI	GCGC	3 cut(s)	374, 820, 1020
AspS9I	GGNCC	3 cut(s)	524, 683, 963
AsuC2I	CCSGG	2 cut(s)	468, 903
AsuHPI	GGTGA	4 cut(s)	160, 182, 301, 355
AvaI	CYCGRG	1 cut(s)	605
AvaII	GGWCC	1 cut(s)	963
BanI	GGYRCC	1 cut(s)	1090
BanII	GRGCYC	2 cut(s)	914, 1000
BbsI	GAAGAC	4 cut(s)	554, 735, 784, 1302
Bbv12I	GWGCWC	1 cut(s)	914
BbvI	GCAGC	5 cut(s)	531, 541, 784, 994, 1276
BccI	CCATC	6 cut(s)	42, 416, 619, 1228, 1232, 1327
BceAI	ACGGC	2 cut(s)	437, 670
BcgI	CGANNNNNNTGC	2 cut(s)	596, 630
BciT130I	CCWGG	1 cut(s)	980
BciVI	GTATCC	1 cut(s)	1161
BclI	TGATCA	1 cut(s)	127
BcnI	CCSGG	2 cut(s)	468, 903
BcoDI	GTCTC	2 cut(s)	245, 432
BcuI	ACTAGT	1 cut(s)	1319
BfaI	CTAG	1 cut(s)	1320
BfmI	CTRYAG	1 cut(s)	213
BfuI	GTATCC	1 cut(s)	1161
BisI	GCNGC	7 cut(s)	520, 523, 555, 773, 1008, 1101, 1290
BlsI	GCNGC	7 cut(s)	521, 524, 556, 774, 1009, 1102, 1291
BmcAI	AGTACT	1 cut(s)	539
Bme1390I	CCNGG	3 cut(s)	468, 903, 980
Bme18I	GGWCC	1 cut(s)	963
BmeT110I	CYCGRG	1 cut(s)	605
BmgT120I	GGNCC	3 cut(s)	524, 683, 963
BmiI	GGNNCC	2 cut(s)	999, 1092
BmrFI	CCNGG	3 cut(s)	468, 903, 980
BmsI	GCATC	1 cut(s)	688
BpiI	GAAGAC	4 cut(s)	554, 735, 784, 1302
BplI	GAGNNNNNCTC	4 cut(s)	804, 836, 883, 915
BpmI	CTGGAG	1 cut(s)	950
BpuMI	CCSGG	2 cut(s)	468, 903
BsaHI	GRCGYC	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	432
BsaJI	CCNNGG	3 cut(s)	466, 849, 1021
BsaXI	ACNNNNNCTCC	4 cut(s)	350, 380, 799, 829
Bse1I	ACTGG	1 cut(s)	1172
Bse3DI	GCAATG	1 cut(s)	1284
BseBI	CCWGG	1 cut(s)	980
BseDI	CCNNGG	3 cut(s)	466, 849, 1021
BseGI	GGATG	7 cut(s)	34, 95, 246, 408, 772, 1031, 1243
BseMI	GCAATG	1 cut(s)	1284
BseMII	CTCAG	2 cut(s)	1241, 1320
BseNI	ACTGG	1 cut(s)	1172
BseRI	GAGGAG	3 cut(s)	91, 304, 1166
BseXI	GCAGC	5 cut(s)	531, 541, 784, 994, 1276
BseYI	CCCAGC	1 cut(s)	1162
BsgI	GTGCAG	1 cut(s)	1221
Bsh1285I	CGRYCG	1 cut(s)	517
BshFI	GGCC	4 cut(s)	525, 685, 978, 1108
BshNI	GGYRCC	1 cut(s)	1090
BsiEI	CGRYCG	1 cut(s)	517
BsiHKAI	GWGCWC	1 cut(s)	914
BsiHKCI	CYCGRG	1 cut(s)	605
BsiSI	CCGG	3 cut(s)	468, 902, 923
BsmAI	GTCTC	2 cut(s)	245, 432
BsmBI	CGTCTC	1 cut(s)	245
BsnI	GGCC	4 cut(s)	525, 685, 978, 1108
Bso31I	GGTCTC	1 cut(s)	432
BsoBI	CYCGRG	1 cut(s)	605
Bsp1286I	GDGCHC	2 cut(s)	914, 1000
Bsp143I	GATC	2 cut(s)	127, 925
Bsp19I	CCATGG	2 cut(s)	849, 1021
BspACI	CCGC	6 cut(s)	222, 517, 522, 665, 1100, 1127
BspANI	GGCC	4 cut(s)	525, 685, 978, 1108
BspCNI	CTCAG	2 cut(s)	1242, 1321
BspLI	GGNNCC	2 cut(s)	999, 1092
BspPI	GGATC	1 cut(s)	933
BspT107I	GGYRCC	1 cut(s)	1090
BspTNI	GGTCTC	1 cut(s)	432
BsrDI	GCAATG	1 cut(s)	1284
BsrI	ACTGG	1 cut(s)	1172
BssECI	CCNNGG	3 cut(s)	466, 849, 1021
BssMI	GATC	2 cut(s)	127, 925
BssNI	GRCGYC	1 cut(s)	450
BssT1I	CCWWGG	2 cut(s)	849, 1021
Bst2UI	CCWGG	1 cut(s)	980
Bst6I	CTCTTC	1 cut(s)	513
BstACI	GRCGYC	1 cut(s)	450
BstC8I	GCNNGC	1 cut(s)	1125
BstDEI	CTNAG	3 cut(s)	298, 1250, 1329
BstDSI	CCRYGG	2 cut(s)	849, 1021
BstF5I	GGATG	7 cut(s)	34, 95, 246, 408, 772, 1031, 1243
BstHHI	GCGC	3 cut(s)	374, 820, 1020
BstKTI	GATC	2 cut(s)	130, 928
BstMAI	GTCTC	2 cut(s)	245, 432
BstMBI	GATC	2 cut(s)	127, 925
BstMCI	CGRYCG	1 cut(s)	517
BstMWI	GCNNNNNNNGC	6 cut(s)	623, 807, 1004, 1124, 1274, 1289
BstNI	CCWGG	1 cut(s)	980
BstSCI	CCNGG	3 cut(s)	466, 901, 978
BstSFI	CTRYAG	1 cut(s)	213
BstV1I	GCAGC	5 cut(s)	531, 541, 784, 994, 1276
BstV2I	GAAGAC	4 cut(s)	554, 735, 784, 1302
BstX2I	RGATCY	1 cut(s)	925
BstXI	CCANNNNNNTGG	1 cut(s)	856
BstYI	RGATCY	1 cut(s)	925
BsuI	GTATCC	1 cut(s)	1161
BsuRI	GGCC	4 cut(s)	525, 685, 978, 1108
BtgI	CCRYGG	2 cut(s)	849, 1021
BtsCI	GGATG	7 cut(s)	34, 95, 246, 408, 772, 1031, 1243
BtsI	GCAGTG	2 cut(s)	1083, 1365
BtsIMutI	CAGTG	3 cut(s)	1071, 1083, 1365
Cac8I	GCNNGC	1 cut(s)	1125
CfoI	GCGC	3 cut(s)	374, 820, 1020
Cfr13I	GGNCC	3 cut(s)	524, 683, 963
CseI	GACGC	3 cut(s)	227, 458, 775
Csp6I	GTAC	1 cut(s)	538
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	3 cut(s)	235, 850, 1022
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	3 cut(s)	298, 1250, 1329
DpnI	GATC	2 cut(s)	129, 927
DpnII	GATC	2 cut(s)	127, 925
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Ecl136II	GAGCTC	1 cut(s)	912
Eco130I	CCWWGG	2 cut(s)	849, 1021
Eco147I	AGGCCT	1 cut(s)	978
Eco24I	GRGCYC	2 cut(s)	914, 1000
Eco31I	GGTCTC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	963
Eco53kI	GAGCTC	1 cut(s)	912
Eco57I	CTGAAG	1 cut(s)	418
Eco88I	CYCGRG	1 cut(s)	605
EcoICRI	GAGCTC	1 cut(s)	912
EcoRI	GAATTC	2 cut(s)	230, 1060
EcoRII	CCWGG	1 cut(s)	978
EcoT14I	CCWWGG	2 cut(s)	849, 1021
EcoT38I	GRGCYC	2 cut(s)	914, 1000
ErhI	CCWWGG	2 cut(s)	849, 1021
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	3 cut(s)	238, 853, 1025
FatI	CATG	3 cut(s)	234, 849, 1021
FauI	CCCGC	1 cut(s)	672
FauNDI	CATATG	1 cut(s)	331
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	7 cut(s)	520, 523, 555, 773, 1008, 1101, 1290
FokI	GGATG	7 cut(s)	21, 82, 233, 395, 779, 1038, 1250
FriOI	GRGCYC	2 cut(s)	914, 1000
Fsp4HI	GCNGC	7 cut(s)	520, 523, 555, 773, 1008, 1101, 1290
FspBI	CTAG	1 cut(s)	1320
GlaI	GCGC	3 cut(s)	373, 819, 1019
GluI	GCNGC	7 cut(s)	520, 523, 555, 773, 1008, 1101, 1290
GsaI	CCCAGC	1 cut(s)	1166
GsuI	CTGGAG	1 cut(s)	950
HaeIII	GGCC	4 cut(s)	525, 685, 978, 1108
HapII	CCGG	3 cut(s)	468, 902, 923
HgaI	GACGC	3 cut(s)	227, 458, 775
HhaI	GCGC	3 cut(s)	374, 820, 1020
Hin1I	GRCGYC	1 cut(s)	450
Hin1II	CATG	3 cut(s)	238, 853, 1025
Hin6I	GCGC	3 cut(s)	372, 818, 1018
HinP1I	GCGC	3 cut(s)	372, 818, 1018
HincII	GTYRAC	1 cut(s)	738
HindII	GTYRAC	1 cut(s)	738
HinfI	GANTC	5 cut(s)	218, 876, 934, 1045, 1178
HpaII	CCGG	3 cut(s)	468, 902, 923
HphI	GGTGA	4 cut(s)	160, 182, 301, 355
Hpy166II	GTNNAC	3 cut(s)	322, 738, 1317
Hpy188I	TCNGA	6 cut(s)	127, 437, 485, 826, 1251, 1330
Hpy188III	TCNNGA	4 cut(s)	512, 805, 889, 929
Hpy8I	GTNNAC	3 cut(s)	322, 738, 1317
Hpy99I	CGWCG	2 cut(s)	452, 791
HpyAV	CCTTC	5 cut(s)	172, 191, 604, 1181, 1213
HpyCH4IV	ACGT	1 cut(s)	1366
HpyCH4V	TGCA	4 cut(s)	530, 617, 1118, 1202
HpyF10VI	GCNNNNNNNGC	6 cut(s)	623, 807, 1004, 1124, 1274, 1289
HpyF3I	CTNAG	3 cut(s)	298, 1250, 1329
HpySE526I	ACGT	1 cut(s)	1366
Hsp92I	GRCGYC	1 cut(s)	450
Hsp92II	CATG	3 cut(s)	238, 853, 1025
HspAI	GCGC	3 cut(s)	372, 818, 1018
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	127, 925
LmnI	GCTCC	2 cut(s)	807, 1003
Lsp1109I	GCAGC	5 cut(s)	531, 541, 784, 994, 1276
LweI	GCATC	1 cut(s)	688
MaeI	CTAG	1 cut(s)	1320
MaeII	ACGT	1 cut(s)	1366
MaeIII	GTNAC	3 cut(s)	1042, 1078, 1336
MalI	GATC	2 cut(s)	129, 927
MboI	GATC	2 cut(s)	127, 925
MboII	GAAGA	8 cut(s)	157, 179, 500, 554, 740, 784, 1228, 1302
MflI	RGATCY	1 cut(s)	925
MhlI	GDGCHC	2 cut(s)	914, 1000
MluCI	AATT	8 cut(s)	8, 54, 230, 579, 637, 691, 833, 1060
MlyI	GAGTC	2 cut(s)	1039, 1187
MmeI	TCCRAC	1 cut(s)	744
MseI	TTAA	1 cut(s)	836
MslI	CAYNNNNRTG	2 cut(s)	330, 1026
MspA1I	CMGCKG	1 cut(s)	522
MspI	CCGG	3 cut(s)	468, 902, 923
MspR9I	CCNGG	3 cut(s)	468, 903, 980
MvaI	CCWGG	1 cut(s)	980
MwoI	GCNNNNNNNGC	6 cut(s)	623, 807, 1004, 1124, 1274, 1289
NciI	CCSGG	2 cut(s)	468, 903
NcoI	CCATGG	2 cut(s)	849, 1021
NdeI	CATATG	1 cut(s)	331
NdeII	GATC	2 cut(s)	127, 925
NlaIII	CATG	3 cut(s)	238, 853, 1025
NlaIV	GGNNCC	2 cut(s)	999, 1092
NmeAIII	GCCGAG	1 cut(s)	801
NmuCI	GTSAC	2 cut(s)	1042, 1078
PaeR7I	CTCGAG	1 cut(s)	605
PceI	AGGCCT	1 cut(s)	978
PfeI	GAWTC	3 cut(s)	218, 876, 934
PflFI	GACNNNGTC	1 cut(s)	452
PkrI	GCNGC	7 cut(s)	521, 524, 556, 774, 1009, 1102, 1291
PleI	GAGTC	2 cut(s)	1039, 1186
PpsI	GAGTC	2 cut(s)	1039, 1186
PsiI	TTATAA	1 cut(s)	584
Psp124BI	GAGCTC	1 cut(s)	914
Psp6I	CCWGG	1 cut(s)	978
PspFI	CCCAGC	1 cut(s)	1162
PspGI	CCWGG	1 cut(s)	978
PspN4I	GGNNCC	2 cut(s)	999, 1092
PspPI	GGNCC	3 cut(s)	524, 683, 963
PspXI	VCTCGAGB	1 cut(s)	605
PsuI	RGATCY	1 cut(s)	925
PsyI	GACNNNGTC	1 cut(s)	452
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
RseI	CAYNNNNRTG	2 cut(s)	330, 1026
SacI	GAGCTC	1 cut(s)	914
SaqAI	TTAA	1 cut(s)	836
SatI	GCNGC	7 cut(s)	520, 523, 555, 773, 1008, 1101, 1290
Sau3AI	GATC	2 cut(s)	127, 925
Sau96I	GGNCC	3 cut(s)	524, 683, 963
ScaI	AGTACT	1 cut(s)	539
SchI	GAGTC	2 cut(s)	1039, 1187
ScrFI	CCNGG	3 cut(s)	468, 903, 980
SduI	GDGCHC	2 cut(s)	914, 1000
SfaNI	GCATC	1 cut(s)	688
SfcI	CTRYAG	1 cut(s)	213
Sfr274I	CTCGAG	1 cut(s)	605
SinI	GGWCC	1 cut(s)	963
SlaI	CTCGAG	1 cut(s)	605
SmiMI	CAYNNNNRTG	2 cut(s)	330, 1026
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
SpeI	ACTAGT	1 cut(s)	1319
Sse9I	AATT	8 cut(s)	8, 54, 230, 579, 637, 691, 833, 1060
SseBI	AGGCCT	1 cut(s)	978
SsiI	CCGC	6 cut(s)	222, 517, 522, 665, 1100, 1127
SspI	AATATT	1 cut(s)	672
SspMI	CTAG	1 cut(s)	1320
SstI	GAGCTC	1 cut(s)	914
StuI	AGGCCT	1 cut(s)	978
StyD4I	CCNGG	3 cut(s)	466, 901, 978
StyI	CCWWGG	2 cut(s)	849, 1021
TaiI	ACGT	1 cut(s)	1369
TaqI	TCGA	7 cut(s)	204, 228, 270, 513, 606, 696, 908
TasI	AATT	8 cut(s)	8, 54, 230, 579, 637, 691, 833, 1060
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	2 cut(s)	525, 1103
TfiI	GAWTC	3 cut(s)	218, 876, 934
Tru1I	TTAA	1 cut(s)	836
Tru9I	TTAA	1 cut(s)	836
TscAI	CASTG	3 cut(s)	1071, 1083, 1365
TseFI	GTSAC	2 cut(s)	1042, 1078
TseI	GCWGC	5 cut(s)	519, 554, 772, 1007, 1289
Tsp45I	GTSAC	2 cut(s)	1042, 1078
TspDTI	ATGAA	4 cut(s)	173, 223, 1172, 1286
TspGWI	ACGGA	1 cut(s)	307
TspRI	CASTG	3 cut(s)	1071, 1083, 1365
Tth111I	GACNNNGTC	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	963
XapI	RAATTY	3 cut(s)	230, 691, 1060
XcmI	CCANNNNNNNNNTGG	2 cut(s)	952, 1101
XhoI	CTCGAG	1 cut(s)	605
XspI	CTAG	1 cut(s)	1320
ZrmI	AGTACT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.