Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006395

Physical Location & Seq

Genomic Coordinates Reverse (-)

43850997 .. 43852400

Gene Structure 1404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG306700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGCGGAAATGAAACAAAGCATAGTGCTATATCCAGCATCACCTGGATCGCACTACTTGGGTTCCACAGTCGAACTAGGAAAGCTCATCTCCCAACGCCACCCCAACTTCTCCATCATAGTCTTGGTCGACACATCTTCCCCTAAAGCTCTAGCCAATTCCTCATACATCAACCATCTTCTCTCTTCTGATCAAACCTCCATCTCCTTCTTCACTCTCCCCTCCCTCAATCTCCCCCACCCCGACGCCCAACCCAAACTCGAATACTTCTTAACTGTCCCCAATGTCGTCCAAGCCCTCAAGACAATCTCTCTCACTTCCAAAGTCCTCGCCTTCATCACGTCAGCAGTGCAACAGTACCCTAACGACCCGGAAATCCCAACTTACTATTACTTCCCCTCTTGCGCCTCTGTTCTTGCTCTGTTTCTGTACCTCCCCACTTTCCATGATCAAACGCCGGAGAGCTTCAAGGACCTAAACGACGACGTTGTGGAGTTTCCGGGATTGCCAGCGCTCCGAGGCTCGCAAATGCCGGATCCTATTCTCGACCGCAACGAGGCTGGATATGATCACTATCTCCATATGGCTTCCTGTCTTCCAAAAGCGAAGGGAATTATAATAAACACCATCCAAGAACTTGAGCCTCGAGCAATCAAGGCCATAAAGGAAGGTGTTTGTGTTCCTAATCATCGAACTCCGCCGTTATATCACATCGGACCGTTCATTTCCGATCGCGACTCTGAAAATAGGTCGATCCAAGGCGGTTCGCCTATGCCAACTAACTGTTCCACGTTGTTATGGCTGGATGAGCAGCCGAGCCGGAGTGTGGTGTACTTGTGCTTTGGAAGCAGAGGTACGTTTTCTGAAGAGCAGTTTAAGGAATTGGCTTTAGGCTTGGAGAGAAGCAAGTTGAGATTTTTGTGGGTTGTGAGGAGTCAGCTGGATTTGGAGGTACTGCTACCACAAGGGTTCTTGGAGAGGACCAAAGATAGAGGTCTTGTAGTCACGTCTTGGGCGCCACAGGAAGTGAACAGTGTGGTGTTGGTGGAGGAAATGAAGCTGGCAATACCGATATTTGAGGTGCTGTCCAAGTCAAAACAAGGGTTGGTGAGTGCAGATGAGGTTGAGAAGAAGGTGTTGCGGTTGATGGACATGGAGTCGGAAGAAGGGAAAAGTCTTAGAGAAAGGTGTCAAGCTGTCAAGGCAATGGGTTTGGCTGCTTGGAGAAATGGTGGCTCATCCTACACTTCTTTTTCAGAGCTGGTAAGTTCTTGGATGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

427

Amino Acids

47.67

Weight (kDa)

5.75

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006395)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25671 FvH4_3g25680
prunus_persica	Prupe.6G136900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0046041 RchiOBHm_Chr5g0046051
rosa_laevigata	RLG00000034387 RLG00000034392 RLG00000034563 RLG00000034568
rosa_multiflora	Rmu_co8238891.1_g000001 Rmu_sc0001035.1_g000030 Rmu_sc0001035.1_g000034 Rmu_sc0001035.1_g000047 Rmu_sc0001035.1_g000051
rosa_roxburghii	Rroxscaffold_1G00035340
rosa_rugosa	Rorug05G0226000 Rorug05G0226100
rosa_samantha	Rh4BG171700 Rh5AG306600 Rh5AG306700 Rh5BG315300 Rh5BG315400 Rh5CG341500 Rh5CG341600 Rh5DG325400
rosa_wichuraiana	Rw5G028680 Rw5G028700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	617
AccB1I	GGYRCC	1 cut(s)	1015
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	1 cut(s)	735
AciI	CCGC	5 cut(s)	5, 550, 698, 762, 1141
AclWI	GGATC	4 cut(s)	55, 530, 543, 748
AcuI	CTGAAG	1 cut(s)	885
AcyI	GRCGYC	2 cut(s)	246, 1016
AfaI	GTAC	5 cut(s)	359, 431, 833, 856, 954
AfeI	AGCGCT	1 cut(s)	513
AfiI	CCNNNNNNNGG	2 cut(s)	556, 826
AgsI	TTSAA	1 cut(s)	469
AhdI	GACNNNNNGTC	1 cut(s)	1156
AjiI	CACGTC	2 cut(s)	342, 1008
AjnI	CCWGG	1 cut(s)	43
AjuI	GAANNNNNNNTTGG	2 cut(s)	769, 801
AluBI	AGCT	7 cut(s)	85, 149, 465, 940, 1060, 1196, 1261
AluI	AGCT	7 cut(s)	85, 149, 465, 940, 1060, 1196, 1261
AlwI	GGATC	4 cut(s)	55, 530, 543, 748
Ama87I	CYCGRG	1 cut(s)	645
Aor51HI	AGCGCT	1 cut(s)	513
AoxI	GGCC	1 cut(s)	657
ApeKI	GCWGC	2 cut(s)	811, 1217
AspLEI	GCGC	3 cut(s)	407, 514, 1018
AspS9I	GGNCC	3 cut(s)	472, 716, 981
AsuC2I	CCSGG	2 cut(s)	371, 501
AsuHPI	GGTGA	2 cut(s)	33, 1120
AvaI	CYCGRG	1 cut(s)	645
AvaII	GGWCC	3 cut(s)	472, 716, 981
BamHI	GGATCC	1 cut(s)	535
BanI	GGYRCC	1 cut(s)	1015
BarI	GAAGNNNNNNTAC	2 cut(s)	838, 870
BbsI	GAAGAC	1 cut(s)	587
BbvI	GCAGC	2 cut(s)	823, 1204
BccI	CCATC	5 cut(s)	122, 183, 209, 635, 1141
BceAI	ACGGC	1 cut(s)	685
BciT130I	CCWGG	1 cut(s)	45
BclI	TGATCA	3 cut(s)	190, 448, 568
BcnI	CCSGG	2 cut(s)	371, 501
BfaI	CTAG	2 cut(s)	77, 152
BfoI	RGCGCY	2 cut(s)	515, 1019
BisI	GCNGC	2 cut(s)	812, 1218
BlsI	GCNGC	2 cut(s)	813, 1219
Bme1390I	CCNGG	3 cut(s)	45, 371, 501
Bme18I	GGWCC	3 cut(s)	472, 716, 981
BmeRI	GACNNNNNGTC	1 cut(s)	1156
BmeT110I	CYCGRG	1 cut(s)	645
BmgBI	CACGTC	2 cut(s)	342, 1008
BmgT120I	GGNCC	3 cut(s)	472, 716, 981
BmiI	GGNNCC	3 cut(s)	64, 537, 1017
BmrFI	CCNGG	3 cut(s)	45, 371, 501
BmsI	GCATC	2 cut(s)	47, 1266
BpiI	GAAGAC	1 cut(s)	587
BpuEI	CTTGAG	2 cut(s)	284, 659
BpuMI	CCSGG	2 cut(s)	371, 501
BsaBI	GATNNNNATC	1 cut(s)	573
BsaHI	GRCGYC	2 cut(s)	246, 1016
BsaJI	CCNNGG	2 cut(s)	517, 757
BsaXI	ACNNNNNCTCC	2 cut(s)	1216, 1246
Bsc4I	CCNNNNNNNGG	2 cut(s)	556, 826
Bse3DI	GCAATG	1 cut(s)	1212
Bse8I	GATNNNNATC	1 cut(s)	573
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	517, 757
BseGI	GGATG	4 cut(s)	627, 811, 1238, 1281
BseJI	GATNNNNATC	1 cut(s)	573
BseLI	CCNNNNNNNGG	2 cut(s)	556, 826
BseMI	GCAATG	1 cut(s)	1212
BseRI	GAGGAG	1 cut(s)	946
BseXI	GCAGC	2 cut(s)	823, 1204
BsgI	GTGCAG	1 cut(s)	1134
Bsh1236I	CGCG	1 cut(s)	735
Bsh1285I	CGRYCG	2 cut(s)	550, 733
BshFI	GGCC	1 cut(s)	659
BshNI	GGYRCC	1 cut(s)	1015
BsiEI	CGRYCG	2 cut(s)	550, 733
BsiHKCI	CYCGRG	1 cut(s)	645
BsiSI	CCGG	5 cut(s)	371, 458, 500, 533, 820
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	2 cut(s)	556, 826
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	659
BsoBI	CYCGRG	1 cut(s)	645
Bsp143I	GATC	7 cut(s)	47, 190, 448, 535, 568, 730, 753
Bsp68I	TCGCGA	1 cut(s)	735
BspACI	CCGC	5 cut(s)	5, 550, 698, 762, 1141
BspANI	GGCC	1 cut(s)	659
BspFNI	CGCG	1 cut(s)	735
BspLI	GGNNCC	3 cut(s)	64, 537, 1017
BspPI	GGATC	4 cut(s)	55, 530, 543, 748
BspQI	GCTCTTC	1 cut(s)	861
BspT107I	GGYRCC	1 cut(s)	1015
BsrDI	GCAATG	1 cut(s)	1212
BssECI	CCNNGG	2 cut(s)	517, 757
BssMI	GATC	7 cut(s)	47, 190, 448, 535, 568, 730, 753
BssNI	GRCGYC	2 cut(s)	246, 1016
BssT1I	CCWWGG	1 cut(s)	757
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	6 cut(s)	70, 277, 357, 720, 785, 1034
Bst6I	CTCTTC	2 cut(s)	190, 861
BstACI	GRCGYC	2 cut(s)	246, 1016
BstC8I	GCNNGC	3 cut(s)	510, 524, 1062
BstDEI	CTNAG	1 cut(s)	1178
BstF5I	GGATG	4 cut(s)	627, 811, 1238, 1281
BstFNI	CGCG	1 cut(s)	735
BstH2I	RGCGCY	2 cut(s)	515, 1019
BstHHI	GCGC	3 cut(s)	407, 514, 1018
BstKTI	GATC	7 cut(s)	50, 193, 451, 538, 571, 733, 756
BstMBI	GATC	7 cut(s)	47, 190, 448, 535, 568, 730, 753
BstMCI	CGRYCG	2 cut(s)	550, 733
BstMWI	GCNNNNNNNGC	4 cut(s)	656, 808, 846, 1202
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	3 cut(s)	43, 369, 499
BstUI	CGCG	1 cut(s)	735
BstV1I	GCAGC	2 cut(s)	823, 1204
BstV2I	GAAGAC	1 cut(s)	587
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BsuRI	GGCC	1 cut(s)	659
BtrI	CACGTC	2 cut(s)	342, 1008
BtsCI	GGATG	4 cut(s)	627, 811, 1238, 1281
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	2 cut(s)	354, 1039
BtuMI	TCGCGA	1 cut(s)	735
Cac8I	GCNNGC	3 cut(s)	510, 524, 1062
CfoI	GCGC	3 cut(s)	407, 514, 1018
Cfr13I	GGNCC	3 cut(s)	472, 716, 981
CpoI	CGGWCCG	1 cut(s)	716
CseI	GACGC	1 cut(s)	254
Csp6I	GTAC	5 cut(s)	358, 430, 832, 855, 953
CspI	CGGWCCG	1 cut(s)	716
CviAII	CATG	2 cut(s)	446, 1153
CviQI	GTAC	5 cut(s)	358, 430, 832, 855, 953
DdeI	CTNAG	1 cut(s)	1178
DinI	GGCGCC	1 cut(s)	1017
DpnI	GATC	7 cut(s)	49, 192, 450, 537, 570, 732, 755
DpnII	GATC	7 cut(s)	47, 190, 448, 535, 568, 730, 753
DriI	GACNNNNNGTC	1 cut(s)	1156
Eam1104I	CTCTTC	2 cut(s)	190, 861
Eam1105I	GACNNNNNGTC	1 cut(s)	1156
EarI	CTCTTC	2 cut(s)	190, 861
EciI	GGCGGA	2 cut(s)	20, 687
Eco130I	CCWWGG	1 cut(s)	757
Eco47I	GGWCC	3 cut(s)	472, 716, 981
Eco47III	AGCGCT	1 cut(s)	513
Eco57I	CTGAAG	1 cut(s)	885
Eco88I	CYCGRG	1 cut(s)	645
EcoO109I	RGGNCCY	1 cut(s)	472
EcoRII	CCWGG	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	757
EgeI	GGCGCC	1 cut(s)	1017
EheI	GGCGCC	1 cut(s)	1017
ErhI	CCWWGG	1 cut(s)	757
FaeI	CATG	2 cut(s)	449, 1156
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	2 cut(s)	445, 1152
FauNDI	CATATG	1 cut(s)	582
FbaI	TGATCA	3 cut(s)	190, 448, 568
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	812, 1218
FokI	GGATG	3 cut(s)	614, 818, 1225
Fsp4HI	GCNGC	2 cut(s)	812, 1218
FspBI	CTAG	2 cut(s)	77, 152
GlaI	GCGC	3 cut(s)	406, 513, 1017
GluI	GCNGC	2 cut(s)	812, 1218
HaeII	RGCGCY	2 cut(s)	515, 1019
HaeIII	GGCC	1 cut(s)	659
HapII	CCGG	5 cut(s)	371, 458, 500, 533, 820
HgaI	GACGC	1 cut(s)	254
HhaI	GCGC	3 cut(s)	407, 514, 1018
Hin1I	GRCGYC	2 cut(s)	246, 1016
Hin1II	CATG	2 cut(s)	449, 1156
Hin6I	GCGC	3 cut(s)	405, 512, 1016
HinP1I	GCGC	3 cut(s)	405, 512, 1016
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	3 cut(s)	737, 934, 1157
HpaII	CCGG	5 cut(s)	371, 458, 500, 533, 820
HphI	GGTGA	2 cut(s)	33, 1120
Hpy166II	GTNNAC	3 cut(s)	130, 832, 1030
Hpy188I	TCNGA	8 cut(s)	190, 518, 716, 730, 742, 865, 1162, 1258
Hpy188III	TCNNGA	3 cut(s)	301, 545, 734
Hpy8I	GTNNAC	3 cut(s)	130, 832, 1030
Hpy99I	CGWCG	3 cut(s)	248, 485, 488
HpyAV	CCTTC	6 cut(s)	217, 343, 601, 662, 1126, 1160
HpyCH4III	ACNGT	6 cut(s)	70, 277, 357, 720, 785, 1034
HpyCH4IV	ACGT	5 cut(s)	341, 486, 791, 857, 1007
HpyCH4V	TGCA	3 cut(s)	352, 1115, 1279
HpyF10VI	GCNNNNNNNGC	4 cut(s)	656, 808, 846, 1202
HpyF3I	CTNAG	1 cut(s)	1178
HpySE526I	ACGT	5 cut(s)	341, 486, 791, 857, 1007
Hsp92I	GRCGYC	2 cut(s)	246, 1016
Hsp92II	CATG	2 cut(s)	449, 1156
HspAI	GCGC	3 cut(s)	405, 512, 1016
KasI	GGCGCC	1 cut(s)	1015
Ksp22I	TGATCA	3 cut(s)	190, 448, 568
Kzo9I	GATC	7 cut(s)	47, 190, 448, 535, 568, 730, 753
LguI	GCTCTTC	1 cut(s)	861
LmnI	GCTCC	1 cut(s)	519
Lsp1109I	GCAGC	2 cut(s)	823, 1204
LweI	GCATC	2 cut(s)	47, 1266
MaeI	CTAG	2 cut(s)	77, 152
MaeII	ACGT	5 cut(s)	341, 486, 791, 857, 1007
MaeIII	GTNAC	1 cut(s)	1003
MalI	GATC	7 cut(s)	49, 192, 450, 537, 570, 732, 755
MboI	GATC	7 cut(s)	47, 190, 448, 535, 568, 730, 753
MboII	GAAGA	8 cut(s)	129, 170, 177, 202, 587, 878, 1141, 1175
MflI	RGATCY	1 cut(s)	535
MluCI	AATT	3 cut(s)	157, 612, 881
Mly113I	GGCGCC	1 cut(s)	1016
MlyI	GAGTC	3 cut(s)	731, 943, 1166
MmeI	TCCRAC	1 cut(s)	1140
MseI	TTAA	2 cut(s)	272, 876
MspA1I	CMGCKG	1 cut(s)	940
MspI	CCGG	5 cut(s)	371, 458, 500, 533, 820
MspR9I	CCNGG	3 cut(s)	45, 371, 501
MvaI	CCWGG	1 cut(s)	45
MvnI	CGCG	1 cut(s)	735
MwoI	GCNNNNNNNGC	4 cut(s)	656, 808, 846, 1202
NarI	GGCGCC	1 cut(s)	1016
NciI	CCSGG	2 cut(s)	371, 501
NdeI	CATATG	1 cut(s)	582
NdeII	GATC	7 cut(s)	47, 190, 448, 535, 568, 730, 753
NlaIII	CATG	2 cut(s)	449, 1156
NlaIV	GGNNCC	3 cut(s)	64, 537, 1017
NmeAIII	GCCGAG	1 cut(s)	840
NmuCI	GTSAC	1 cut(s)	1003
NruI	TCGCGA	1 cut(s)	735
PaeR7I	CTCGAG	1 cut(s)	645
PciSI	GCTCTTC	1 cut(s)	861
PcsI	WCGNNNNNNNCGW	1 cut(s)	552
PfoI	TCCNGGA	1 cut(s)	499
PkrI	GCNGC	2 cut(s)	813, 1219
Ple19I	CGATCG	1 cut(s)	733
PleI	GAGTC	3 cut(s)	731, 942, 1165
PluTI	GGCGCC	1 cut(s)	1019
PpsI	GAGTC	3 cut(s)	731, 942, 1165
PpuMI	RGGWCCY	1 cut(s)	472
PsiI	TTATAA	1 cut(s)	617
Psp5II	RGGWCCY	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	3 cut(s)	64, 537, 1017
PspPI	GGNCC	3 cut(s)	472, 716, 981
PspPPI	RGGWCCY	1 cut(s)	472
PspXI	VCTCGAGB	1 cut(s)	645
PsuI	RGATCY	1 cut(s)	535
PvuI	CGATCG	1 cut(s)	733
PvuII	CAGCTG	1 cut(s)	940
RruI	TCGCGA	1 cut(s)	735
RsaI	GTAC	5 cut(s)	359, 431, 833, 856, 954
RsaNI	GTAC	5 cut(s)	358, 430, 832, 855, 953
Rsr2I	CGGWCCG	1 cut(s)	716
RsrII	CGGWCCG	1 cut(s)	716
SalI	GTCGAC	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	861
SaqAI	TTAA	2 cut(s)	272, 876
SatI	GCNGC	2 cut(s)	812, 1218
Sau3AI	GATC	7 cut(s)	47, 190, 448, 535, 568, 730, 753
Sau96I	GGNCC	3 cut(s)	472, 716, 981
SchI	GAGTC	3 cut(s)	731, 943, 1166
ScrFI	CCNGG	3 cut(s)	45, 371, 501
SfaNI	GCATC	2 cut(s)	47, 1266
SfoI	GGCGCC	1 cut(s)	1017
Sfr274I	CTCGAG	1 cut(s)	645
SinI	GGWCC	3 cut(s)	472, 716, 981
SlaI	CTCGAG	1 cut(s)	645
SmlI	CTYRAG	3 cut(s)	299, 638, 645
SmoI	CTYRAG	3 cut(s)	299, 638, 645
Sse9I	AATT	3 cut(s)	157, 612, 881
SsiI	CCGC	5 cut(s)	5, 550, 698, 762, 1141
SspDI	GGCGCC	1 cut(s)	1015
SspMI	CTAG	2 cut(s)	77, 152
StyD4I	CCNGG	3 cut(s)	43, 369, 499
StyI	CCWWGG	1 cut(s)	757
TaaI	ACNGT	6 cut(s)	70, 277, 357, 720, 785, 1034
TaiI	ACGT	5 cut(s)	344, 489, 794, 860, 1010
TaqI	TCGA	7 cut(s)	72, 129, 261, 546, 646, 691, 752
TasI	AATT	3 cut(s)	157, 612, 881
TatI	WGTACW	1 cut(s)	831
Tru1I	TTAA	2 cut(s)	272, 876
Tru9I	TTAA	2 cut(s)	272, 876
TscAI	CASTG	2 cut(s)	354, 1039
TseFI	GTSAC	1 cut(s)	1003
TseI	GCWGC	2 cut(s)	811, 1217
Tsp45I	GTSAC	1 cut(s)	1003
TspDTI	ATGAA	4 cut(s)	26, 325, 712, 1070
TspRI	CASTG	2 cut(s)	354, 1039
VpaK11BI	GGWCC	3 cut(s)	472, 716, 981
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XhoI	CTCGAG	1 cut(s)	645
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	2 cut(s)	77, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.