FvH4_3g26260

Molybdopterin biosynthesis protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
19194656 .. 19202708
8053 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26260.t1

Sequence Viewer

Length: 1575 bp
ATGACTGACGGTAGCACCAAACCCATACTGCTCTCCGCCGAGGAGGCTCTGCAAATAGTCCTGAAAGTAGTCCAGAAGCTGCCACATGTCACCGTGCCCCTCCACGATGCTCTCGGGAAGGTCTTGGCCGAGGACATTCGCGCCGGCGAACCCTTCCCTGCTTTCCCTGCTTCAATCAAGGATGGATATGCGGTGGTGGCTTCAGATGGGCCTGGAGAGTATCCTGTAGTTGCTGAAGCAAGAGCCGGCAGCGATGGAATCGGCGTCGCTGTCACTCCTGGGACTGTGGCGTACGTTACCACCGGAGGACCAATACCTGATGGTGCTGATGCGGTTGTACAAGTTGAGGACACTGAACAGGTGCATGTGAATTCACATGAATCAAAGCGAGTGAGAGTACTGGTACAGACGAGAAAAGGAGTTGATATCCGTCCAGTGGGATGTGATATTGAGAAAGATGATGTAGTTTTGACATCTGGACAAAGAATTGGTGCTTCAGAAGTTGGTTTACTCGCTACTGTTGGAAGGACAATGGTGAAGGTATATCCCACTCCAAAAATCGGTGTGCTTTCCACAGGAGATGAACTTGTAGAGCCAACAACAGGTGGTCTGAGTCGCGGCCAGATTAGGGACTCCAACCGTGCTATGATAATGGCAGCTTCACTACAGCATCATTGCGAAATTAGTGATTTCGGCATAACTAGAGATGATGAAGAAGAACTCGAAAAGATCATGAATACTGTCATTTCTTCTGGAATTGATATTCTTCTTACCTCTGGTGGTGTTTCTATGGGAGATAAGGACTTTGTCAAACCACTGTTACGAAAGAGAGGGACAGTGCATTTCAGTAAGGTTTGCATGAAACCAGGGAAACCTTTGACTTTCGCGGAGATCAATTCTGAACCAGCAGATAAATTGAGAAAGAGAAAGCTTTTTGCCTTTGGGCTGCCTGGAAATCCAGTTAGCTGCCTTGTCTGCTTCCATTTATTTGTGGTACCAACCATCCGCTTTCTTTCTGGATGGGCAGACCCTTATCCTTTCAGAGTGCAAGCTCGCTTACTCCAGCCTATAAAGACAGATCCAGTCCGTCCAGAATTCCATTCTGCTACTGTCAGATGGGAGTTAAATAAGGGATTGGGTAATCCTGGCTTTGTTGCTGAGAGTACTGGCTTCCAGAGAAGCAGTCGGATTTTAAGTATGAAGTCTGCTAATGCGTTGTTGGAGTTGCCAGCAACAGGCAGTCTAATGCCAGCTGGGACTTCTGTTTCAGCTATCATTATTTCTGATATAAGTAATGCTGCTATTAGTAAAAATTCCTCATCCCCCTGTCCAGCTTCTCATATAGAAAGATATAAAACACAAGAAACATTCATAGCTGAGTCTCACGATACTGGGGTTAGAGTAGCTGTTCTTACTGTGAGTGATACTGTTGCATCCGGGGCTGGGCCGGATAGGAGTGGTCCAAGGGCAGTTTCTGTTGTGACTTCTTGTTCAGAAAGGTTGGGAGGAGCCAAGGTTGTTTCAACAGCTGTGGTACCAGATGATGTGGCACTGGATTTACCCCACGAGATGTAA

Protein Analysis

525

Amino Acids

55.56

Weight (kDa)

6.1

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MoeA_N PF03453 11 - 175 3.3e-41 MoeA N-terminal region (domain I and II)
MoCF_biosynth PF00994 188 - 336 3.3e-28 Probable molybdopterin binding domain
MoeA_C PF03454 350 - 425 3e-08 MoeA C-terminal region (domain IV)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 994, 1534
AccB1I GGYRCC 2 cut(s) 994, 1534
AccII CGCG 3 cut(s) 141, 618, 887
AciI CCGC 6 cut(s) 36, 191, 332, 618, 887, 1006
AclWI GGATC 1 cut(s) 1073
AcoI YGGCCR 2 cut(s) 126, 619
AcsI RAATTY 3 cut(s) 370, 1094, 1312
AcuI CTGAAG 3 cut(s) 186, 255, 480
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 7 cut(s) 293, 339, 399, 405, 996, 1165, 1536
AfiI CCNNNNNNNGG 6 cut(s) 436, 560, 602, 628, 1235, 1443
AflIII ACRYGT 1 cut(s) 85
AgsI TTSAA 2 cut(s) 174, 1524
AjnI CCWGG 5 cut(s) 211, 277, 865, 949, 1144
AjuI GAANNNNNNNTTGG 2 cut(s) 1456, 1488
Alw26I GTCTC 1 cut(s) 1386
AlwI GGATC 1 cut(s) 1073
AlwNI CAGNNNCTG 2 cut(s) 79, 1475
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 4 cut(s) 126, 209, 619, 1445
ApeKI GCWGC 6 cut(s) 79, 249, 656, 946, 966, 1298
ApoI RAATTY 3 cut(s) 370, 1094, 1312
Asp718I GGTACC 2 cut(s) 994, 1534
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 4 cut(s) 209, 308, 1445, 1460
AsuC2I CCSGG 1 cut(s) 1438
AsuHPI GGTGA 2 cut(s) 82, 547
AvaI CYCGRG 1 cut(s) 113
AvaII GGWCC 2 cut(s) 308, 1460
BaeGI GKGCMC 1 cut(s) 99
BaeI ACNNNNGTAYC 2 cut(s) 1380, 1413
BanI GGYRCC 2 cut(s) 994, 1534
BarI GAAGNNNNNNTAC 2 cut(s) 492, 524
BauI CACGAG 1 cut(s) 1565
BbvI GCAGC 6 cut(s) 66, 261, 668, 933, 953, 1285
BccI CCATC 7 cut(s) 176, 200, 248, 314, 1010, 1014, 1110
BciT130I CCWGG 5 cut(s) 213, 279, 867, 951, 1146
BciVI GTATCC 1 cut(s) 231
BcnI CCSGG 1 cut(s) 1438
BcoDI GTCTC 1 cut(s) 1386
BfaI CTAG 1 cut(s) 702
BfmI CTRYAG 2 cut(s) 225, 665
BfuI GTATCC 1 cut(s) 231
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 7 cut(s) 80, 250, 619, 657, 947, 967, 1299
BlsI GCNGC 7 cut(s) 81, 251, 620, 658, 948, 968, 1300
BmcAI AGTACT 2 cut(s) 399, 1165
Bme1390I CCNGG 6 cut(s) 213, 279, 867, 951, 1146, 1438
Bme18I GGWCC 2 cut(s) 308, 1460
BmeT110I CYCGRG 1 cut(s) 113
BmgT120I GGNCC 4 cut(s) 209, 308, 1445, 1460
BmiI GGNNCC 3 cut(s) 996, 1510, 1536
BmrFI CCNGG 6 cut(s) 213, 279, 867, 951, 1146, 1438
BmrI ACTGGG 1 cut(s) 1401
BmsI GCATC 4 cut(s) 97, 319, 679, 1442
BmuI ACTGGG 1 cut(s) 1401
BpmI CTGGAG 2 cut(s) 234, 1046
BpuMI CCSGG 1 cut(s) 1438
BsaHI GRCGYC 1 cut(s) 264
BsaJI CCNNGG 7 cut(s) 39, 129, 278, 866, 1437, 1463, 1512
BsaWI WCCGGW 1 cut(s) 302
BsaXI ACNNNNNCTCC 2 cut(s) 1500, 1530
Bsc4I CCNNNNNNNGG 6 cut(s) 436, 560, 602, 628, 1235, 1443
Bse118I RCCGGY 2 cut(s) 143, 245
Bse1I ACTGG 7 cut(s) 405, 434, 959, 1082, 1171, 1396, 1557
Bse3DI GCAATG 1 cut(s) 673
BseBI CCWGG 5 cut(s) 213, 279, 867, 951, 1146
BseDI CCNNGG 7 cut(s) 39, 129, 278, 866, 1437, 1463, 1512
BseGI GGATG 6 cut(s) 187, 446, 1002, 1025, 1319, 1433
BseLI CCNNNNNNNGG 6 cut(s) 436, 560, 602, 628, 1235, 1443
BseMI GCAATG 1 cut(s) 673
BseMII CTCAG 3 cut(s) 602, 1149, 1368
BseNI ACTGG 7 cut(s) 405, 434, 959, 1082, 1171, 1396, 1557
BseRI GAGGAG 2 cut(s) 56, 1521
BseSI GKGCMC 1 cut(s) 99
BseXI GCAGC 6 cut(s) 66, 261, 668, 933, 953, 1285
BseYI CCCAGC 2 cut(s) 1253, 1442
Bsh1236I CGCG 3 cut(s) 141, 618, 887
BshFI GGCC 4 cut(s) 128, 211, 621, 1447
BshNI GGYRCC 2 cut(s) 994, 1534
BsiHKCI CYCGRG 1 cut(s) 113
BsiSI CCGG 5 cut(s) 144, 246, 303, 1437, 1448
BsiWI CGTACG 1 cut(s) 291
BslFI GGGAC 4 cut(s) 295, 644, 847, 1270
BslI CCNNNNNNNGG 6 cut(s) 436, 560, 602, 628, 1235, 1443
BsmAI GTCTC 1 cut(s) 1386
BsmFI GGGAC 4 cut(s) 295, 644, 847, 1270
BsnI GGCC 4 cut(s) 128, 211, 621, 1447
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 99
Bsp1407I TGTACA 1 cut(s) 337
Bsp143I GATC 3 cut(s) 729, 891, 1078
BspACI CCGC 6 cut(s) 36, 191, 332, 618, 887, 1006
BspANI GGCC 4 cut(s) 128, 211, 621, 1447
BspCNI CTCAG 3 cut(s) 603, 1150, 1369
BspFNI CGCG 3 cut(s) 141, 618, 887
BspHI TCATGA 1 cut(s) 732
BspLI GGNNCC 3 cut(s) 996, 1510, 1536
BspPI GGATC 1 cut(s) 1073
BspT107I GGYRCC 2 cut(s) 994, 1534
BsrDI GCAATG 1 cut(s) 673
BsrFI RCCGGY 2 cut(s) 143, 245
BsrGI TGTACA 1 cut(s) 337
BsrI ACTGG 7 cut(s) 405, 434, 959, 1082, 1171, 1396, 1557
BssAI RCCGGY 2 cut(s) 143, 245
BssECI CCNNGG 7 cut(s) 39, 129, 278, 866, 1437, 1463, 1512
BssMI GATC 3 cut(s) 729, 891, 1078
BssNI GRCGYC 1 cut(s) 264
BssSI CACGAG 1 cut(s) 1565
BssT1I CCWWGG 2 cut(s) 1463, 1512
Bst2BI CACGAG 1 cut(s) 1565
Bst2UI CCWGG 5 cut(s) 213, 279, 867, 951, 1146
BstACI GRCGYC 1 cut(s) 264
BstAUI TGTACA 1 cut(s) 337
BstC8I GCNNGC 6 cut(s) 145, 247, 1050, 1054, 1230, 1251
BstDEI CTNAG 3 cut(s) 611, 1158, 1377
BstF5I GGATG 6 cut(s) 187, 446, 1002, 1025, 1319, 1433
BstFNI CGCG 3 cut(s) 141, 618, 887
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 3 cut(s) 732, 894, 1081
BstMAI GTCTC 1 cut(s) 1386
BstMBI GATC 3 cut(s) 729, 891, 1078
BstMWI GCNNNNNNNGC 5 cut(s) 44, 167, 197, 975, 1439
BstNI CCWGG 5 cut(s) 213, 279, 867, 951, 1146
BstNSI RCATGY 2 cut(s) 89, 368
BstSCI CCNGG 6 cut(s) 211, 277, 865, 949, 1144, 1436
BstSFI CTRYAG 2 cut(s) 225, 665
BstSLI GKGCMC 1 cut(s) 99
BstUI CGCG 3 cut(s) 141, 618, 887
BstV1I GCAGC 6 cut(s) 66, 261, 668, 933, 953, 1285
BstX2I RGATCY 1 cut(s) 1078
BstYI RGATCY 1 cut(s) 1078
BsuI GTATCC 1 cut(s) 231
BsuRI GGCC 4 cut(s) 128, 211, 621, 1447
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 6 cut(s) 187, 446, 1002, 1025, 1319, 1433
BtsIMutI CAGTG 5 cut(s) 351, 441, 815, 843, 1550
Cac8I GCNNGC 6 cut(s) 145, 247, 1050, 1054, 1230, 1251
CaiI CAGNNNCTG 2 cut(s) 79, 1475
CciI TCATGA 1 cut(s) 732
CfoI GCGC 1 cut(s) 143
Cfr10I RCCGGY 2 cut(s) 143, 245
Cfr13I GGNCC 4 cut(s) 209, 308, 1445, 1460
CseI GACGC 1 cut(s) 253
Csp6I GTAC 7 cut(s) 292, 338, 398, 404, 995, 1164, 1535
CspCI CAANNNNNGTGG 2 cut(s) 1512, 1547
CviAII CATG 5 cut(s) 86, 365, 377, 733, 859
CviQI GTAC 7 cut(s) 292, 338, 398, 404, 995, 1164, 1535
DdeI CTNAG 3 cut(s) 611, 1158, 1377
DpnI GATC 3 cut(s) 731, 893, 1080
DpnII GATC 3 cut(s) 729, 891, 1078
EaeI YGGCCR 2 cut(s) 126, 619
EciI GGCGGA 1 cut(s) 25
Eco130I CCWWGG 2 cut(s) 1463, 1512
Eco32I GATATC 1 cut(s) 427
Eco47I GGWCC 2 cut(s) 308, 1460
Eco57I CTGAAG 3 cut(s) 186, 255, 480
Eco88I CYCGRG 1 cut(s) 113
EcoRI GAATTC 2 cut(s) 370, 1094
EcoRII CCWGG 5 cut(s) 211, 277, 865, 949, 1144
EcoRV GATATC 1 cut(s) 427
EcoT14I CCWWGG 2 cut(s) 1463, 1512
ErhI CCWWGG 2 cut(s) 1463, 1512
FaeI CATG 5 cut(s) 89, 368, 380, 736, 862
FaqI GGGAC 4 cut(s) 295, 644, 847, 1270
FatI CATG 5 cut(s) 85, 364, 376, 732, 858
Fnu4HI GCNGC 7 cut(s) 80, 250, 619, 657, 947, 967, 1299
FokI GGATG 6 cut(s) 194, 453, 989, 1032, 1306, 1420
Fsp4HI GCNGC 7 cut(s) 80, 250, 619, 657, 947, 967, 1299
FspBI CTAG 1 cut(s) 702
GlaI GCGC 1 cut(s) 142
GluI GCNGC 7 cut(s) 80, 250, 619, 657, 947, 967, 1299
GsaI CCCAGC 2 cut(s) 1257, 1446
GsuI CTGGAG 2 cut(s) 234, 1046
HaeIII GGCC 4 cut(s) 128, 211, 621, 1447
HapII CCGG 5 cut(s) 144, 246, 303, 1437, 1448
HgaI GACGC 1 cut(s) 253
HhaI GCGC 1 cut(s) 143
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 5 cut(s) 89, 368, 380, 736, 862
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HindIII AAGCTT 1 cut(s) 929
HinfI GANTC 5 cut(s) 258, 380, 613, 632, 1379
HpaII CCGG 5 cut(s) 144, 246, 303, 1437, 1448
HphI GGTGA 2 cut(s) 82, 547
Hpy166II GTNNAC 1 cut(s) 509
Hpy188I TCNGA 9 cut(s) 205, 499, 612, 901, 1043, 1115, 1188, 1285, 1495
Hpy8I GTNNAC 1 cut(s) 509
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 4 cut(s) 112, 163, 519, 532
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 6 cut(s) 52, 364, 841, 858, 1048, 1433
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 167, 197, 975, 1439
HpyF3I CTNAG 3 cut(s) 611, 1158, 1377
HpySE526I ACGT 1 cut(s) 294
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 5 cut(s) 89, 368, 380, 736, 862
HspAI GCGC 1 cut(s) 141
KpnI GGTACC 2 cut(s) 998, 1538
KroI GCCGGC 2 cut(s) 143, 245
KroNI GCCGGC 2 cut(s) 145, 247
Kzo9I GATC 3 cut(s) 729, 891, 1078
LmnI GCTCC 1 cut(s) 1508
Lsp1109I GCAGC 6 cut(s) 66, 261, 668, 933, 953, 1285
LweI GCATC 4 cut(s) 97, 319, 679, 1442
MaeI CTAG 1 cut(s) 702
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 5 cut(s) 88, 271, 295, 819, 1480
MalI GATC 3 cut(s) 731, 893, 1080
MboI GATC 3 cut(s) 729, 891, 1078
MboII GAAGA 4 cut(s) 725, 728, 741, 758
MflI RGATCY 1 cut(s) 1078
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 8 cut(s) 370, 486, 681, 756, 895, 914, 1094, 1312
MlyI GAGTC 3 cut(s) 622, 626, 1388
MmeI TCCRAC 4 cut(s) 502, 660, 1166, 1200
MreI CGCCGGCG 1 cut(s) 143
MroNI GCCGGC 2 cut(s) 143, 245
MseI TTAA 2 cut(s) 1124, 1193
MspA1I CMGCKG 2 cut(s) 1253, 1529
MspI CCGG 5 cut(s) 144, 246, 303, 1437, 1448
MspR9I CCNGG 6 cut(s) 213, 279, 867, 951, 1146, 1438
MvaI CCWGG 5 cut(s) 213, 279, 867, 951, 1146
MvnI CGCG 3 cut(s) 141, 618, 887
MwoI GCNNNNNNNGC 5 cut(s) 44, 167, 197, 975, 1439
NaeI GCCGGC 2 cut(s) 145, 247
NciI CCSGG 1 cut(s) 1438
NdeII GATC 3 cut(s) 729, 891, 1078
NgoMIV GCCGGC 2 cut(s) 143, 245
NlaIII CATG 5 cut(s) 89, 368, 380, 736, 862
NlaIV GGNNCC 3 cut(s) 996, 1510, 1536
NmeAIII GCCGAG 2 cut(s) 64, 154
NmuCI GTSAC 3 cut(s) 88, 271, 1480
NspI RCATGY 2 cut(s) 89, 368
PagI TCATGA 1 cut(s) 732
PciI ACATGT 1 cut(s) 85
PdiI GCCGGC 2 cut(s) 145, 247
PfeI GAWTC 2 cut(s) 258, 380
Pfl23II CGTACG 1 cut(s) 291
PflFI GACNNNGTC 1 cut(s) 806
PkrI GCNGC 7 cut(s) 81, 251, 620, 658, 948, 968, 1300
PleI GAGTC 3 cut(s) 621, 626, 1387
PpsI GAGTC 3 cut(s) 621, 626, 1387
PscI ACATGT 1 cut(s) 85
Psp6I CCWGG 5 cut(s) 211, 277, 865, 949, 1144
PspFI CCCAGC 2 cut(s) 1253, 1442
PspGI CCWGG 5 cut(s) 211, 277, 865, 949, 1144
PspLI CGTACG 1 cut(s) 291
PspN4I GGNNCC 3 cut(s) 996, 1510, 1536
PspPI GGNCC 4 cut(s) 209, 308, 1445, 1460
PstNI CAGNNNCTG 2 cut(s) 79, 1475
PsuI RGATCY 1 cut(s) 1078
PsyI GACNNNGTC 1 cut(s) 806
PvuII CAGCTG 2 cut(s) 1253, 1529
RsaI GTAC 7 cut(s) 293, 339, 399, 405, 996, 1165, 1536
RsaNI GTAC 7 cut(s) 292, 338, 398, 404, 995, 1164, 1535
SaqAI TTAA 2 cut(s) 1124, 1193
SatI GCNGC 7 cut(s) 80, 250, 619, 657, 947, 967, 1299
Sau3AI GATC 3 cut(s) 729, 891, 1078
Sau96I GGNCC 4 cut(s) 209, 308, 1445, 1460
ScaI AGTACT 2 cut(s) 399, 1165
SchI GAGTC 3 cut(s) 622, 626, 1388
ScrFI CCNGG 6 cut(s) 213, 279, 867, 951, 1146, 1438
SduI GDGCHC 1 cut(s) 99
SfaNI GCATC 4 cut(s) 97, 319, 679, 1442
SfcI CTRYAG 2 cut(s) 225, 665
SgrAI CRCCGGYG 1 cut(s) 143
SinI GGWCC 2 cut(s) 308, 1460
Sse9I AATT 8 cut(s) 370, 486, 681, 756, 895, 914, 1094, 1312
SsiI CCGC 6 cut(s) 36, 191, 332, 618, 887, 1006
SspMI CTAG 1 cut(s) 702
StyD4I CCNGG 6 cut(s) 211, 277, 865, 949, 1144, 1436
StyI CCWWGG 2 cut(s) 1463, 1512
TaiI ACGT 1 cut(s) 297
TaqI TCGA 1 cut(s) 723
TasI AATT 8 cut(s) 370, 486, 681, 756, 895, 914, 1094, 1312
TatI WGTACW 3 cut(s) 337, 397, 1163
TauI GCSGC 1 cut(s) 621
TfiI GAWTC 2 cut(s) 258, 380
Tru1I TTAA 2 cut(s) 1124, 1193
Tru9I TTAA 2 cut(s) 1124, 1193
TscAI CASTG 5 cut(s) 358, 441, 822, 843, 1557
TseFI GTSAC 3 cut(s) 88, 271, 1480
TseI GCWGC 6 cut(s) 79, 249, 656, 946, 966, 1298
Tsp45I GTSAC 3 cut(s) 88, 271, 1480
TspDTI ATGAA 7 cut(s) 393, 597, 726, 749, 875, 1214, 1360
TspGWI ACGGA 2 cut(s) 419, 1076
TspRI CASTG 5 cut(s) 358, 441, 822, 843, 1557
Tth111I GACNNNGTC 1 cut(s) 806
VpaK11BI GGWCC 2 cut(s) 308, 1460
XapI RAATTY 3 cut(s) 370, 1094, 1312
XceI RCATGY 2 cut(s) 89, 368
XspI CTAG 1 cut(s) 702
ZrmI AGTACT 2 cut(s) 399, 1165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.