Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004056

Physical Location & Seq

Genomic Coordinates Forward (+)

25678515 .. 25681171

Gene Structure 2657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0240900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAGAAGGAGCTGGTGGAGGTGTTTGAGGAGGTGATGAAGGCGGCGGAACCCACGAAATCGTGTGACGGAGACGCCGAGGAAAGCAATTCCTTGAGCCTTGGCCCGCTGGAGGATAGATATGGGTCTCGAACTAACCTGTCATGTACAAGCCAAAGAAGCTTCGCCAGTGAAACGGAAGATATTGGTTCGAGTAATTCTCAAGAGGGTGGAAAGTTCAACGATTATTCACCATCTATAAGTAAGGAGTTCTGTTTCTTTCCTACTAAGACTGCTTATGATCCCTCTGAGTCCACTTCAAGCATGTGGAATTCAGAGGGTGAAGATCGGAGTTTGGAGCCAACTTTAAAGAAGCGCAAAGCAACTTTTAGAAACAATGAAGAGGATGGGCAATTTTTCTGCCAGCCACCTGGCCAGCCCAACAAGTTTCCTGGTCGATTTACAGGGCCAGATATAATGCTACAGGTCAGCAGGAGAGAAAAGAAAGAAGGAATTGCTGCTGATCCAAATATTGACACTAAAATGAAGACAATCTCAATTGAAGGACAAAAGAAAAACCTCCAGACTGACTACATTTTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006464 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008940 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009144 GO:0009150 GO:0009199 GO:0009205 GO:0009259 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016491 GO:0016661 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0018315 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0030151 GO:0032324 GO:0032870 GO:0034641 GO:0036211 GO:0042040 GO:0042221 GO:0042278 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046483 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051189 GO:0051716 GO:0055086 GO:0055114 GO:0061598 GO:0061599 GO:0065007 GO:0070566 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 ko04727 map00790 map01100 map04727

Pfam Domains

Protein Families

MoCF_biosynth MoeA_C MoeA_N

Protein Analysis

194

Amino Acids

21.74

Weight (kDa)

4.85

Isoelectric Point (pI)

66.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20990 AT5G20990 AT5G20990
fragaria_vesca	FvH4_3g26260 FvH4_3g26260 FvH4_3g26260 FvH4_3g26260 FvH4_3g26260
malus_domestica	MD11G1181200.v1.1
prunus_persica	Prupe.6G153900_v2.0.a1 Prupe.6G153900_v2.0.a1
pyrus_communis	pycom03g11700 pycom11g15630
rosa_chinensis	RchiOBHm_Chr5g0048741
rosa_laevigata	RLG00000034556
rosa_multiflora	Rmu_co8087680.1_g000001 Rmu_sc0003675.1_g000001 Rmu_sc0006432.1_g000010 Rmu_sc0006432.1_g000011 Rmu_sc0011208.1_g000008 Rmu_sc0027077.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033080
rosa_rugosa	Rorug05G0240900 Rorug05G0257800 Rorug05G0257900 Rorug05G0258000
rosa_samantha	Rh5AG320700 Rh5BG330500 Rh5CG356400 Rh5CG367600 Rh5DG341700
rosa_wichuraiana	Rw5G030150 Rw5G031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	44, 47, 107
AclWI	GGATC	2 cut(s)	275, 497
AcoI	YGGCCR	1 cut(s)	412
AcsI	RAATTY	1 cut(s)	310
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	4 cut(s)	220, 300, 542, 580
AjnI	CCWGG	2 cut(s)	409, 430
AluBI	AGCT	2 cut(s)	13, 162
AluI	AGCT	2 cut(s)	13, 162
Alw26I	GTCTC	2 cut(s)	66, 132
AlwI	GGATC	2 cut(s)	275, 497
AoxI	GGCC	3 cut(s)	103, 412, 446
ApeKI	GCWGC	1 cut(s)	497
ApoI	RAATTY	1 cut(s)	310
AspLEI	GCGC	1 cut(s)	357
AspS9I	GGNCC	2 cut(s)	104, 446
AsuHPI	GGTGA	3 cut(s)	46, 222, 332
BalI	TGGCCA	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	533
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	2 cut(s)	241, 380
BciT130I	CCWGG	2 cut(s)	411, 432
BcoDI	GTCTC	2 cut(s)	66, 132
BfmI	CTRYAG	1 cut(s)	461
BisI	GCNGC	2 cut(s)	45, 498
BlsI	GCNGC	2 cut(s)	46, 499
Bme1390I	CCNGG	2 cut(s)	411, 432
BmgT120I	GGNCC	2 cut(s)	104, 446
BmiI	GGNNCC	2 cut(s)	51, 339
BmrFI	CCNGG	2 cut(s)	411, 432
BpiI	GAAGAC	1 cut(s)	533
BplI	GAGNNNNNCTC	2 cut(s)	184, 216
BpmI	CTGGAG	2 cut(s)	131, 545
BpuEI	CTTGAG	2 cut(s)	115, 186
BsaHI	GRCGYC	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	78, 100
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse1I	ACTGG	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	411, 432
BseDI	CCNNGG	2 cut(s)	78, 100
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	484
BshFI	GGCC	3 cut(s)	105, 414, 448
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	2 cut(s)	66, 132
BsmBI	CGTCTC	1 cut(s)	66
BsnI	GGCC	3 cut(s)	105, 414, 448
Bso31I	GGTCTC	1 cut(s)	132
Bsp1407I	TGTACA	1 cut(s)	146
Bsp143I	GATC	3 cut(s)	280, 325, 502
BspACI	CCGC	3 cut(s)	44, 47, 107
BspANI	GGCC	3 cut(s)	105, 414, 448
BspCNI	CTCAG	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	51, 339
BspPI	GGATC	2 cut(s)	275, 497
BspTNI	GGTCTC	1 cut(s)	132
BsrGI	TGTACA	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	78, 100
BssMI	GATC	3 cut(s)	280, 325, 502
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	100
Bst2UI	CCWGG	2 cut(s)	411, 432
Bst6I	CTCTTC	1 cut(s)	375
BstACI	GRCGYC	1 cut(s)	75
BstAUI	TGTACA	1 cut(s)	146
BstC8I	GCNNGC	3 cut(s)	107, 404, 416
BstDEI	CTNAG	2 cut(s)	267, 288
BstF5I	GGATG	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	357
BstKTI	GATC	3 cut(s)	283, 328, 505
BstMAI	GTCTC	2 cut(s)	66, 132
BstMBI	GATC	3 cut(s)	280, 325, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNI	CCWGG	2 cut(s)	411, 432
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	2 cut(s)	409, 430
BstSFI	CTRYAG	1 cut(s)	461
BstV1I	GCAGC	1 cut(s)	484
BstV2I	GAAGAC	1 cut(s)	533
BstXI	CCANNNNNNTGG	1 cut(s)	410
BsuRI	GGCC	3 cut(s)	105, 414, 448
BtsCI	GGATG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	175
Cac8I	GCNNGC	3 cut(s)	107, 404, 416
CfoI	GCGC	1 cut(s)	357
Cfr13I	GGNCC	2 cut(s)	104, 446
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	2 cut(s)	144, 304
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	2 cut(s)	267, 288
DpnI	GATC	3 cut(s)	282, 327, 504
DpnII	GATC	3 cut(s)	280, 325, 502
DraI	TTTAAA	1 cut(s)	348
EaeI	YGGCCR	1 cut(s)	412
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
EciI	GGCGGA	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	100
Eco31I	GGTCTC	1 cut(s)	132
EcoRI	GAATTC	1 cut(s)	310
EcoRII	CCWGG	2 cut(s)	409, 430
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	2 cut(s)	147, 307
FaiI	YATR	6 cut(s)	123, 145, 239, 279, 305, 455
FatI	CATG	2 cut(s)	143, 303
FauI	CCCGC	1 cut(s)	114
Fnu4HI	GCNGC	2 cut(s)	45, 498
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	2 cut(s)	45, 498
GlaI	GCGC	1 cut(s)	356
GluI	GCNGC	2 cut(s)	45, 498
GsuI	CTGGAG	2 cut(s)	131, 545
HaeIII	GGCC	3 cut(s)	105, 414, 448
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	357
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	147, 307
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	1 cut(s)	290
HphI	GGTGA	3 cut(s)	46, 222, 332
Hpy166II	GTNNAC	1 cut(s)	294
Hpy188I	TCNGA	3 cut(s)	289, 316, 330
Hpy188III	TCNNGA	3 cut(s)	129, 203, 562
Hpy8I	GTNNAC	1 cut(s)	294
HpyAV	CCTTC	3 cut(s)	34, 482, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	2 cut(s)	267, 288
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	147, 307
HspAI	GCGC	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	280, 325, 502
LmnI	GCTCC	2 cut(s)	10, 337
Lsp1109I	GCAGC	1 cut(s)	484
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	3 cut(s)	282, 327, 504
MboI	GATC	3 cut(s)	280, 325, 502
MboII	GAAGA	4 cut(s)	191, 335, 392, 538
MfeI	CAATTG	1 cut(s)	537
MlsI	TGGCCA	1 cut(s)	414
MluCI	AATT	6 cut(s)	88, 196, 310, 392, 492, 537
MluNI	TGGCCA	1 cut(s)	414
MlyI	GAGTC	1 cut(s)	299
Mox20I	TGGCCA	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	414
MseI	TTAA	1 cut(s)	347
MslI	CAYNNNNRTG	1 cut(s)	521
Msp20I	TGGCCA	1 cut(s)	414
MspA1I	CMGCKG	1 cut(s)	109
MspR9I	CCNGG	2 cut(s)	411, 432
MunI	CAATTG	1 cut(s)	537
MvaI	CCWGG	2 cut(s)	411, 432
MwoI	GCNNNNNNNGC	1 cut(s)	159
NdeII	GATC	3 cut(s)	280, 325, 502
NlaIII	CATG	2 cut(s)	147, 307
NlaIV	GGNNCC	2 cut(s)	51, 339
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	65
NspI	RCATGY	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	46, 499
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	409, 430
PspGI	CCWGG	2 cut(s)	409, 430
PspN4I	GGNNCC	2 cut(s)	51, 339
PspPI	GGNCC	2 cut(s)	104, 446
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	2 cut(s)	45, 498
Sau3AI	GATC	3 cut(s)	280, 325, 502
Sau96I	GGNCC	2 cut(s)	104, 446
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	2 cut(s)	411, 432
SetI	ASST	8 cut(s)	15, 24, 36, 141, 164, 412, 468, 561
SfcI	CTRYAG	1 cut(s)	461
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	2 cut(s)	94, 201
SmoI	CTYRAG	2 cut(s)	94, 201
Sse9I	AATT	6 cut(s)	88, 196, 310, 392, 492, 537
SsiI	CCGC	3 cut(s)	44, 47, 107
SspI	AATATT	1 cut(s)	511
StyD4I	CCNGG	2 cut(s)	409, 430
StyI	CCWWGG	1 cut(s)	100
TaqI	TCGA	3 cut(s)	130, 191, 436
TasI	AATT	6 cut(s)	88, 196, 310, 392, 492, 537
TatI	WGTACW	1 cut(s)	146
TauI	GCSGC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	1 cut(s)	497
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	3 cut(s)	53, 393, 539
TspGWI	ACGGA	2 cut(s)	84, 191
TspRI	CASTG	1 cut(s)	175
XapI	RAATTY	1 cut(s)	310
XceI	RCATGY	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.