Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0004056

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG330500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3135 bp

ATGATGGCGGAGACCAAACCCACACTGCTCTCCGCGGAGGAGGCTCTGGAAATAGTTCTGAGAGTTATCCAGCGGCTGCCACCTGTCACGGTGCCCCTCCACGATGCCCTCGGGAAGGTCTTGGCCGAGGACATTCGCGCCGGCGACCCTCTGCCTCCTTTCCCTGCATCCATCAAGGATGGATATGCAGTGGTAGCTTCAGATGGGCCTGGAGAGTATCCTGTAGTTGCTGAAGCAAGAGCCGGTAGCGATGGAATCGGCGTCACTGTCACCCCTGGGACTGTGGCATATGTTACTACTGGAGGACCGATACCTGATGGTGCTGATGCAGTTGTACAAGTTGAGGACACTGAACAGGTGCATGTGCATTCACATGAATCAAGGCGAGTGAGAATACTGGTACAGACGAGCAAAGGAGTTGATATACGTCCAGTGGGATGTGACATTGAGAAAGATGATGGAGTATTGATATCTGGACAAAGAATTGGTGCTGCAGAAATTGGTATACTTGCTACTGTCGGAAGGACAATGGTGAAGGTATATCCCACTCCAAAAATCGGTGTGCTTTCCACGGGAGATGAACTTGTAGAGCCAACGACAGGATGTCTGAGTCGCGGCCAGATCAGGGACTCCAACCGTGCTATGATAATGGCAGCTTCACTACAGCATCATTGTGAAGTTAGTGATTTCGGCATAACTAGAGATGATGAAGAAGGACTCGAAAAGATCATAGATACTGTCATTTCTGCTGGAATTGATATTCTTCTCACCTCTGGAGGTGTTTCTATGGGAGATAAGGACTTTGTCAAACCACTGTTGCATAAGAAAGGGACGGTGCATTTCAGTAAGGTGTGGATGAAACCAGGGAAACCATTGACTTTCGCGGAGATCAATTCTGAACCAGCAGATAAAATGAGAATGAGAAAACTTTTTGCGTTTGGGCTGCCTGGAAATCCAGTTAGCTGTCTTGTCTGCTTCCATCTATTTGTGGTACCAACCATCCGCTTTCTTGCTGGATGGGCAGACCCTTTGCCTTTCAGAGTGCAGGCTCGCCTTCTCCAGCCTGTAAAGACAGATCCAGTCCGTCCAGAATTCCATTCTGCTATCGTCAAATGGGAGTTAAATAAGGGATTGGATAATCCAGGCTTTGTTGCGGAAAGTACTGGCCACCAGAGAAGCAGCAAGATTTTAAGTATGAAATCTGCTAATGCGTTGTTGGAGTTGCCTGCAACAGGCAGTGTAATGCCCGCTGGGACTTCTGTGTCAGCCATTATTATTTCCGATATAAGTACTGCTGCTATTAATAAAACTTCCTCATCCCTGGGTCCAGCTTCTCATATAGAAAGATTTAGAACACAAGAATTATCCGTAGCTGAGTCTTGCGATGCTGAGTTCAGAGTAGCTATTCTTACCGTGAGTGATACTGTTGCATCCGGGGCTGGGCCGGATAGGAGTGGTCCAAGGGCAGTTTCTGTTGTAACTTCTTGTTCAGAAAGGTTGGGAGGAGCCAAGGTTGTTTCAACGGCTGTGGTACCAGATGATGTAAGCAAAATTAAGGATGTTCTGCAGAGATGGAGTGATATCGAGAATATGGATCTCATCCTCACCCTTGGTGGCACTGGATTTACCCCCCGAGATGTAACTCCAGAAGCAACCAAAGAGTTGATTGAGAAAGAAACACCTGGTCTTCTTCTTGTCATGATGCAAGAGAGTTTAAAGGTGACACCATTTGCTATGCTCTCCCGTGCTGCAGCAGGAATAAGAGGGTCAACATTGATCATCAACATGCCGGGGAATCCAAATGCGGTTGCTGAGTGCATGGAGGCTTTGTTGCCTGCCCTCAAGCATGGATTAAAGCAGATAAAGGGAGATAAGAGAGAAAAACATCCTCGACATGTCCCTCATGCGCAAGCTGCGTCCATGGATACTTGGGAGCACAGTTATAAGTTGGCCTCGGGTACTGGATATTCTGCACCTGTGGGTTGGCAAATTAGATTACTTCCCGGAGCTATGCAGAATCTGCACCGTCTTATATCTCGTCTTTCCTCAACTTCAATCTGCAAAAGCACGACTACGACAAAGTTTCTGGGGGAGAAGAGCAACGGCAGTTTGGGAAACAATGGTGTTGAAGCTTGTAAGCCTATGAGCTCCCGATTTTTTTCTTTTCAATCTGGTGGTGATGGTCAAAATGATGGTAACAGTGGGTGGGATAAACCTGCGGCGGGAACATTTGGCAATAATGCATCAGATAATTTGGGGTGGGATTCTACGTCCTCGTGGTCGCTTGGACTGACCAAGGAGCATTTTGATGGGGAGGTGGTGGGGCGACGGACGAGCGGAGATGAGACTCCCCAGTCTGCAGTCATCTCTGGTTTGCAAGAGATTGAGGATAGAATAAAGGAATTGGAGGCAGAGAACCGGAAAAGTAAGAGATTTGTTGATGGATGGGGAGAGAGATTGAAAGAGATAAGTGTGCTGATGAAGCAAGTGCGCGAACCCGGTGCAAGAGGGTCTTATCTCAAGGACTCGGAAAAGGCTGAGATGTATCGATTGCACAAGGAAAACCCTGATGTTTACACTGTTGAGCGCCTGGCCAAGGATTATAGGATTATGAGGCAGAGAGTGCATGCCATTCTTTGGCTGAAGGAGCTTCAGGAGGAAGAGGAGAAGAAGCTTGGTCGTCCCTTAGATGATTCTGTTGAGCTCCTGCTTGACAGCTTTCCTGAATTTTTCAATTCCCATGACCGTGAATTCCATGTTGCATCACTTCCTTACAAACCTGACTTCAAGGTTATGCCAGAGGGTTGGGATGGTACCACCAGAGATTTGGATGAAGTCCACTATGAGATCTCCAAGAAGGAAGATGAGATGCTGTATCAAGAATTTGTCCAGAGGATGAACTTCAACAAAATGAAAATGAGAGGAGAGGTTTTCCACCACAAGTATAGTCGTCGTCGCTCTGCAGATGGGTGGAATTTCACGGTGGAGAAAATGGGACCCAAAGGAAAGCGTGGAGGTGGTGGTGGCTGGAAGTTTGTCAGCCTGCCAGATGGTTCGAGCCGACCACTGAATGAAAAGGAGAAAATGTATGTGAAACGAGAAACTCCACGCCATCGACGCAAGATCCTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006464 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008940 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009144 GO:0009150 GO:0009199 GO:0009205 GO:0009259 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016491 GO:0016661 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0018315 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0030151 GO:0032324 GO:0032870 GO:0034641 GO:0036211 GO:0042040 GO:0042221 GO:0042278 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046483 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051189 GO:0051716 GO:0055086 GO:0055114 GO:0061598 GO:0061599 GO:0065007 GO:0070566 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 ko04727 map00790 map01100 map04727

Pfam Domains

Protein Families

MoCF_biosynth MoeA_C MoeA_N

Protein Analysis

1044

Amino Acids

114.34

Weight (kDa)

6.75

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MoeA_N	PF03453	10 - 174	1.9e-39	MoeA N-terminal region (domain I and II)
MoCF_biosynth	PF00994	187 - 335	3.4e-27	Probable molybdopterin binding domain
MoeA_C	PF03454	349 - 424	2.4e-08	MoeA C-terminal region (domain IV)
MoCF_biosynth	PF00994	468 - 616	1.2e-30	Probable molybdopterin binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20990 AT5G20990 AT5G20990
fragaria_vesca	FvH4_3g26260 FvH4_3g26260 FvH4_3g26260 FvH4_3g26260 FvH4_3g26260
malus_domestica	MD11G1181200.v1.1
prunus_persica	Prupe.6G153900_v2.0.a1 Prupe.6G153900_v2.0.a1
pyrus_communis	pycom03g11700 pycom11g15630
rosa_chinensis	RchiOBHm_Chr5g0048741
rosa_laevigata	RLG00000034556
rosa_multiflora	Rmu_co8087680.1_g000001 Rmu_sc0003675.1_g000001 Rmu_sc0006432.1_g000010 Rmu_sc0006432.1_g000011 Rmu_sc0011208.1_g000008 Rmu_sc0027077.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033080
rosa_rugosa	Rorug05G0240900 Rorug05G0257800 Rorug05G0257900 Rorug05G0258000
rosa_samantha	Rh5AG320700 Rh5BG330500 Rh5CG356400 Rh5CG367600 Rh5DG341700
rosa_wichuraiana	Rw5G030150 Rw5G031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1944
AasI	GACNNNNNNGTC	2 cut(s)	1261, 2353
Acc16I	TGCGCA	1 cut(s)	1908
Acc36I	ACCTGC	1 cut(s)	2224
Acc65I	GGTACC	3 cut(s)	991, 1531, 2813
AccB1I	GGYRCC	4 cut(s)	91, 991, 1531, 2813
AccB7I	CCANNNNNTGG	1 cut(s)	2637
AccBSI	CCGCTC	1 cut(s)	2337
AccI	GTMKAC	1 cut(s)	505
AccII	CGCG	5 cut(s)	35, 138, 615, 884, 2493
AclWI	GGATC	3 cut(s)	1070, 1602, 3118
AcoI	YGGCCR	4 cut(s)	123, 616, 1165, 2592
AcsI	RAATTY	5 cut(s)	1091, 2726, 2750, 2882, 2974
AcuI	CTGAAG	4 cut(s)	183, 252, 2636, 2663
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	8 cut(s)	336, 402, 993, 1162, 1291, 1533, 1960, 2815
AfiI	CCNNNNNNNGG	9 cut(s)	115, 557, 599, 625, 1232, 1440, 2222, 2596, 2637
AflIII	ACRYGT	1 cut(s)	1894
AgsI	TTSAA	8 cut(s)	1521, 2055, 2129, 2168, 2461, 2734, 2788, 2905
AhdI	GACNNNNNGTC	1 cut(s)	603
AjnI	CCWGG	8 cut(s)	208, 274, 862, 946, 1141, 1320, 1681, 2589
AjuI	GAANNNNNNNTTGG	2 cut(s)	1453, 1485
Alw21I	GWGCWC	3 cut(s)	1938, 2150, 2706
Alw26I	GTCTC	2 cut(s)	5, 2339
AlwI	GGATC	3 cut(s)	1070, 1602, 3118
AlwNI	CAGNNNCTG	3 cut(s)	76, 1472, 2020
Ama87I	CYCGRG	3 cut(s)	110, 1632, 1954
AoxI	GGCC	7 cut(s)	123, 206, 616, 1165, 1442, 1950, 2592
ApeKI	GCWGC	9 cut(s)	76, 491, 653, 943, 1179, 1295, 1748, 1751, 1913
ApoI	RAATTY	5 cut(s)	1091, 2726, 2750, 2882, 2974
AseI	ATTAAT	1 cut(s)	1302
Asp700I	GAANNNNTTC	1 cut(s)	54
Asp718I	GGTACC	3 cut(s)	991, 1531, 2813
AspLEI	GCGC	4 cut(s)	140, 1909, 2493, 2589
AspS9I	GGNCC	6 cut(s)	206, 305, 1325, 1442, 1457, 2996
AsuC2I	CCSGG	4 cut(s)	1435, 1791, 2004, 2499
AsuHPI	GGTGA	6 cut(s)	262, 544, 760, 1597, 1732, 2189
AvaI	CYCGRG	3 cut(s)	110, 1632, 1954
AvaII	GGWCC	4 cut(s)	305, 1325, 1457, 2996
BaeGI	GKGCMC	1 cut(s)	96
BalI	TGGCCA	2 cut(s)	1167, 2594
BanI	GGYRCC	4 cut(s)	91, 991, 1531, 2813
BanII	GRGCYC	2 cut(s)	2150, 2706
BauI	CACGAG	1 cut(s)	2275
BbsI	GAAGAC	1 cut(s)	1679
Bbv12I	GWGCWC	3 cut(s)	1938, 2150, 2706
BbvI	GCAGC	9 cut(s)	63, 478, 665, 930, 1191, 1282, 1735, 1763, 1900
BceAI	ACGGC	2 cut(s)	1539, 2119
BcgI	CGANNNNNNTGC	2 cut(s)	2483, 2517
BciT130I	CCWGG	8 cut(s)	210, 276, 864, 948, 1143, 1322, 1683, 2591
BciVI	GTATCC	2 cut(s)	228, 1918
BclI	TGATCA	1 cut(s)	1776
BcnI	CCSGG	4 cut(s)	1435, 1791, 2004, 2499
BcoDI	GTCTC	2 cut(s)	5, 2339
BfaI	CTAG	1 cut(s)	699
BfmI	CTRYAG	7 cut(s)	222, 492, 662, 1565, 1749, 2358, 2961
BfoI	RGCGCY	1 cut(s)	2590
BfuAI	ACCTGC	1 cut(s)	2224
BfuI	GTATCC	2 cut(s)	228, 1918
BglII	AGATCT	1 cut(s)	2847
BmcAI	AGTACT	2 cut(s)	1162, 1291
Bme18I	GGWCC	4 cut(s)	305, 1325, 1457, 2996
BmeRI	GACNNNNNGTC	1 cut(s)	603
BmeT110I	CYCGRG	3 cut(s)	110, 1632, 1954
BmgT120I	GGNCC	6 cut(s)	206, 305, 1325, 1442, 1457, 2996
BmiI	GGNNCC	8 cut(s)	93, 993, 1326, 1507, 1533, 2815, 2997, 2998
BmrI	ACTGGG	1 cut(s)	2347
BmuI	ACTGGG	1 cut(s)	2347
BpiI	GAAGAC	1 cut(s)	1679
BpmI	CTGGAG	5 cut(s)	231, 321, 795, 1043, 1629
BpuEI	CTTGAG	2 cut(s)	1826, 2504
BpuMI	CCSGG	4 cut(s)	1435, 1791, 2004, 2499
Bsa29I	ATCGAT	1 cut(s)	2548
BsaHI	GRCGYC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	2418
BsaXI	ACNNNNNCTCC	6 cut(s)	1497, 1527, 1814, 1844, 3071, 3101
Bsc4I	CCNNNNNNNGG	9 cut(s)	115, 557, 599, 625, 1232, 1440, 2222, 2596, 2637
Bse118I	RCCGGY	2 cut(s)	140, 242
Bse1I	ACTGG	9 cut(s)	304, 402, 431, 956, 1079, 1168, 1624, 1966, 2353
BseBI	CCWGG	8 cut(s)	210, 276, 864, 948, 1143, 1322, 1683, 2591
BseCI	ATCGAT	1 cut(s)	2548
BseLI	CCNNNNNNNGG	9 cut(s)	115, 557, 599, 625, 1232, 1440, 2222, 2596, 2637
BseMII	CTCAG	6 cut(s)	50, 599, 1365, 1380, 1803, 2529
BseNI	ACTGG	9 cut(s)	304, 402, 431, 956, 1079, 1168, 1624, 1966, 2353
BseRI	GAGGAG	4 cut(s)	53, 1518, 2678, 2937
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	9 cut(s)	63, 478, 665, 930, 1191, 1282, 1735, 1763, 1900
BseYI	CCCAGC	2 cut(s)	1250, 1439
BsgI	GTGCAG	3 cut(s)	1064, 1956, 2006
Bsh1236I	CGCG	5 cut(s)	35, 138, 615, 884, 2493
BshFI	GGCC	7 cut(s)	125, 208, 618, 1167, 1444, 1952, 2594
BshNI	GGYRCC	4 cut(s)	91, 991, 1531, 2813
BshVI	ATCGAT	1 cut(s)	2548
BsiHKAI	GWGCWC	3 cut(s)	1938, 2150, 2706
BsiHKCI	CYCGRG	3 cut(s)	110, 1632, 1954
BsiSI	CCGG	8 cut(s)	141, 243, 1434, 1445, 1790, 2004, 2419, 2499
BslFI	GGGAC	7 cut(s)	292, 641, 844, 1267, 1883, 2667, 3009
BslI	CCNNNNNNNGG	9 cut(s)	115, 557, 599, 625, 1232, 1440, 2222, 2596, 2637
BsmAI	GTCTC	2 cut(s)	5, 2339
BsmFI	GGGAC	7 cut(s)	292, 641, 844, 1267, 1883, 2667, 3009
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	7 cut(s)	125, 208, 618, 1167, 1444, 1952, 2594
Bso31I	GGTCTC	1 cut(s)	5
BsoBI	CYCGRG	3 cut(s)	110, 1632, 1954
Bsp1286I	GDGCHC	4 cut(s)	96, 1938, 2150, 2706
Bsp1407I	TGTACA	1 cut(s)	334
Bsp143I	GATC	8 cut(s)	621, 726, 888, 1075, 1594, 1776, 2847, 3123
Bsp19I	CCATGG	1 cut(s)	1920
BspANI	GGCC	7 cut(s)	125, 208, 618, 1167, 1444, 1952, 2594
BspCNI	CTCAG	6 cut(s)	51, 600, 1366, 1381, 1804, 2530
BspDI	ATCGAT	1 cut(s)	2548
BspFNI	CGCG	5 cut(s)	35, 138, 615, 884, 2493
BspHI	TCATGA	1 cut(s)	1698
BspLI	GGNNCC	8 cut(s)	93, 993, 1326, 1507, 1533, 2815, 2997, 2998
BspMAI	CTGCAG	5 cut(s)	496, 1569, 1753, 2362, 2965
BspMI	ACCTGC	1 cut(s)	2224
BspPI	GGATC	3 cut(s)	1070, 1602, 3118
BspQI	GCTCTTC	1 cut(s)	2090
BspT107I	GGYRCC	4 cut(s)	91, 991, 1531, 2813
BspTNI	GGTCTC	1 cut(s)	5
BsrBI	CCGCTC	1 cut(s)	2337
BsrFI	RCCGGY	2 cut(s)	140, 242
BsrGI	TGTACA	1 cut(s)	334
BsrI	ACTGG	9 cut(s)	304, 402, 431, 956, 1079, 1168, 1624, 1966, 2353
BssAI	RCCGGY	2 cut(s)	140, 242
BssMI	GATC	8 cut(s)	621, 726, 888, 1075, 1594, 1776, 2847, 3123
BssNAI	GTATAC	1 cut(s)	506
BssNI	GRCGYC	1 cut(s)	261
BssSI	CACGAG	1 cut(s)	2275
BssT1I	CCWWGG	6 cut(s)	1460, 1509, 1609, 1920, 2295, 2595
Bst1107I	GTATAC	1 cut(s)	506
Bst2BI	CACGAG	1 cut(s)	2275
Bst2UI	CCWGG	8 cut(s)	210, 276, 864, 948, 1143, 1322, 1683, 2591
Bst6I	CTCTTC	2 cut(s)	2090, 2655
BstACI	GRCGYC	1 cut(s)	261
BstAPI	GCANNNNNTGC	2 cut(s)	2020, 2623
BstAUI	TGTACA	1 cut(s)	334
BstC8I	GCNNGC	9 cut(s)	142, 1047, 1051, 1227, 1248, 1836, 1911, 2628, 3044
BstDEI	CTNAG	7 cut(s)	59, 608, 1374, 1389, 1812, 2538, 2686
BstDSI	CCRYGG	3 cut(s)	33, 570, 1920
BstENI	CCTNNNNNAGG	3 cut(s)	113, 1230, 2594
BstFNI	CGCG	5 cut(s)	35, 138, 615, 884, 2493
BstH2I	RGCGCY	1 cut(s)	2590
BstHHI	GCGC	4 cut(s)	140, 1909, 2493, 2589
BstKTI	GATC	8 cut(s)	624, 729, 891, 1078, 1597, 1779, 2850, 3126
BstMAI	GTCTC	2 cut(s)	5, 2339
BstMBI	GATC	8 cut(s)	621, 726, 888, 1075, 1594, 1776, 2847, 3123
BstNI	CCWGG	8 cut(s)	210, 276, 864, 948, 1143, 1322, 1683, 2591
BstNSI	RCATGY	4 cut(s)	365, 1789, 1898, 2630
BstSFI	CTRYAG	7 cut(s)	222, 492, 662, 1565, 1749, 2358, 2961
BstSLI	GKGCMC	1 cut(s)	96
BstUI	CGCG	5 cut(s)	35, 138, 615, 884, 2493
BstV1I	GCAGC	9 cut(s)	63, 478, 665, 930, 1191, 1282, 1735, 1763, 1900
BstV2I	GAAGAC	1 cut(s)	1679
BstX2I	RGATCY	4 cut(s)	1075, 1594, 2847, 3123
BstXI	CCANNNNNNTGG	2 cut(s)	2805, 2827
BstYI	RGATCY	4 cut(s)	1075, 1594, 2847, 3123
BstZ17I	GTATAC	1 cut(s)	506
Bsu15I	ATCGAT	1 cut(s)	2548
BsuI	GTATCC	2 cut(s)	228, 1918
BsuRI	GGCC	7 cut(s)	125, 208, 618, 1167, 1444, 1952, 2594
BsuTUI	ATCGAT	1 cut(s)	2548
BtgI	CCRYGG	3 cut(s)	33, 570, 1920
BtgZI	GCGATG	2 cut(s)	264, 1398
BtsI	GCAGTG	3 cut(s)	23, 195, 1243
BveI	ACCTGC	1 cut(s)	2224
Cac8I	GCNNGC	9 cut(s)	142, 1047, 1051, 1227, 1248, 1836, 1911, 2628, 3044
CaiI	CAGNNNCTG	3 cut(s)	76, 1472, 2020
CciI	TCATGA	1 cut(s)	1698
CfoI	GCGC	4 cut(s)	140, 1909, 2493, 2589
Cfr10I	RCCGGY	2 cut(s)	140, 242
Cfr13I	GGNCC	6 cut(s)	206, 305, 1325, 1442, 1457, 2996
Cfr42I	CCGCGG	1 cut(s)	36
ClaI	ATCGAT	1 cut(s)	2548
CseI	GACGC	3 cut(s)	250, 1905, 3126
CsiI	ACCWGGT	1 cut(s)	1681
Csp6I	GTAC	8 cut(s)	335, 401, 992, 1161, 1290, 1532, 1959, 2814
CspCI	CAANNNNNGTGG	2 cut(s)	1509, 1544
CviQI	GTAC	8 cut(s)	335, 401, 992, 1161, 1290, 1532, 1959, 2814
DdeI	CTNAG	7 cut(s)	59, 608, 1374, 1389, 1812, 2538, 2686
DpnI	GATC	8 cut(s)	623, 728, 890, 1077, 1596, 1778, 2849, 3125
DpnII	GATC	8 cut(s)	621, 726, 888, 1075, 1594, 1776, 2847, 3123
DraI	TTTAAA	1 cut(s)	1716
DrdI	GACNNNNNNGTC	2 cut(s)	1261, 2353
DriI	GACNNNNNGTC	1 cut(s)	603
DseDI	GACNNNNNNGTC	2 cut(s)	1261, 2353
EaeI	YGGCCR	4 cut(s)	123, 616, 1165, 2592
Eam1104I	CTCTTC	2 cut(s)	2090, 2655
Eam1105I	GACNNNNNGTC	1 cut(s)	603
EarI	CTCTTC	2 cut(s)	2090, 2655
EciI	GGCGGA	1 cut(s)	23
Ecl136II	GAGCTC	2 cut(s)	2148, 2704
Eco130I	CCWWGG	6 cut(s)	1460, 1509, 1609, 1920, 2295, 2595
Eco24I	GRGCYC	2 cut(s)	2150, 2706
Eco31I	GGTCTC	1 cut(s)	5
Eco32I	GATATC	2 cut(s)	471, 1582
Eco47I	GGWCC	4 cut(s)	305, 1325, 1457, 2996
Eco53kI	GAGCTC	2 cut(s)	2148, 2704
Eco57I	CTGAAG	4 cut(s)	183, 252, 2636, 2663
Eco88I	CYCGRG	3 cut(s)	110, 1632, 1954
EcoICRI	GAGCTC	2 cut(s)	2148, 2704
EcoNI	CCTNNNNNAGG	3 cut(s)	113, 1230, 2594
EcoO109I	RGGNCCY	1 cut(s)	2996
EcoRI	GAATTC	2 cut(s)	1091, 2750
EcoRII	CCWGG	8 cut(s)	208, 274, 862, 946, 1141, 1320, 1681, 2589
EcoRV	GATATC	2 cut(s)	471, 1582
EcoT14I	CCWWGG	6 cut(s)	1460, 1509, 1609, 1920, 2295, 2595
EcoT22I	ATGCAT	1 cut(s)	2245
EcoT38I	GRGCYC	2 cut(s)	2150, 2706
ErhI	CCWWGG	6 cut(s)	1460, 1509, 1609, 1920, 2295, 2595
FalI	AAGNNNNNCTT	2 cut(s)	2497, 2529
FaqI	GGGAC	7 cut(s)	292, 641, 844, 1267, 1883, 2667, 3009
FauI	CCCGC	2 cut(s)	1255, 2215
FauNDI	CATATG	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	1776
FblI	GTMKAC	1 cut(s)	505
FriOI	GRGCYC	2 cut(s)	2150, 2706
FspBI	CTAG	1 cut(s)	699
FspI	TGCGCA	1 cut(s)	1908
GlaI	GCGC	4 cut(s)	139, 1908, 2492, 2588
GsaI	CCCAGC	2 cut(s)	1254, 1443
GsuI	CTGGAG	5 cut(s)	231, 321, 795, 1043, 1629
HaeII	RGCGCY	1 cut(s)	2590
HaeIII	GGCC	7 cut(s)	125, 208, 618, 1167, 1444, 1952, 2594
HapII	CCGG	8 cut(s)	141, 243, 1434, 1445, 1790, 2004, 2419, 2499
HgaI	GACGC	3 cut(s)	250, 1905, 3126
HhaI	GCGC	4 cut(s)	140, 1909, 2493, 2589
Hin1I	GRCGYC	1 cut(s)	261
Hin6I	GCGC	4 cut(s)	138, 1907, 2491, 2587
HinP1I	GCGC	4 cut(s)	138, 1907, 2491, 2587
HincII	GTYRAC	1 cut(s)	1770
HindII	GTYRAC	1 cut(s)	1770
HindIII	AAGCTT	2 cut(s)	2130, 2672
HpaII	CCGG	8 cut(s)	141, 243, 1434, 1445, 1790, 2004, 2419, 2499
HphI	GGTGA	6 cut(s)	262, 544, 760, 1597, 1732, 2189
Hpy166II	GTNNAC	4 cut(s)	506, 1770, 2575, 2839
Hpy8I	GTNNAC	4 cut(s)	506, 1770, 2575, 2839
Hpy99I	CGWCG	4 cut(s)	2331, 2955, 2958, 3120
HpyAV	CCTTC	7 cut(s)	109, 516, 529, 707, 1064, 2638, 2851
HpyCH4IV	ACGT	2 cut(s)	427, 2270
HpyF3I	CTNAG	7 cut(s)	59, 608, 1374, 1389, 1812, 2538, 2686
HpySE526I	ACGT	2 cut(s)	427, 2270
Hsp92I	GRCGYC	1 cut(s)	261
HspAI	GCGC	4 cut(s)	138, 1907, 2491, 2587
KflI	GGGWCCC	1 cut(s)	2996
KpnI	GGTACC	3 cut(s)	995, 1535, 2817
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
Ksp22I	TGATCA	1 cut(s)	1776
KspI	CCGCGG	1 cut(s)	36
Kzo9I	GATC	8 cut(s)	621, 726, 888, 1075, 1594, 1776, 2847, 3123
LguI	GCTCTTC	1 cut(s)	2090
LmnI	GCTCC	7 cut(s)	1505, 1933, 2006, 2153, 2299, 2647, 2709
Lsp1109I	GCAGC	9 cut(s)	63, 478, 665, 930, 1191, 1282, 1735, 1763, 1900
MabI	ACCWGGT	1 cut(s)	1681
MaeI	CTAG	1 cut(s)	699
MaeII	ACGT	2 cut(s)	427, 2270
MaeIII	GTNAC	9 cut(s)	85, 262, 268, 292, 440, 1477, 1639, 1720, 2195
MalI	GATC	8 cut(s)	623, 728, 890, 1077, 1596, 1778, 2849, 3125
MbiI	CCGCTC	1 cut(s)	2337
MboI	GATC	8 cut(s)	621, 726, 888, 1075, 1594, 1776, 2847, 3123
MboII	GAAGA	8 cut(s)	722, 755, 1679, 1682, 2107, 2672, 2680, 2873
MflI	RGATCY	4 cut(s)	1075, 1594, 2847, 3123
MhlI	GDGCHC	4 cut(s)	96, 1938, 2150, 2706
MlsI	TGGCCA	2 cut(s)	1167, 2594
MluNI	TGGCCA	2 cut(s)	1167, 2594
MlyI	GAGTC	6 cut(s)	619, 623, 711, 1385, 2341, 2519
MmeI	TCCRAC	3 cut(s)	499, 657, 1197
Mox20I	TGGCCA	2 cut(s)	1167, 2594
Mph1103I	ATGCAT	1 cut(s)	2245
MreI	CGCCGGCG	1 cut(s)	140
MroNI	GCCGGC	1 cut(s)	140
MroXI	GAANNNNTTC	1 cut(s)	54
MscI	TGGCCA	2 cut(s)	1167, 2594
MseI	TTAA	6 cut(s)	1121, 1190, 1302, 1554, 1715, 1853
MslI	CAYNNNNRTG	5 cut(s)	372, 672, 1784, 2307, 2745
Msp20I	TGGCCA	2 cut(s)	1167, 2594
MspA1I	CMGCKG	3 cut(s)	35, 73, 1250
MspI	CCGG	8 cut(s)	141, 243, 1434, 1445, 1790, 2004, 2419, 2499
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	8 cut(s)	210, 276, 864, 948, 1143, 1322, 1683, 2591
MvnI	CGCG	5 cut(s)	35, 138, 615, 884, 2493
NaeI	GCCGGC	1 cut(s)	142
NciI	CCSGG	4 cut(s)	1435, 1791, 2004, 2499
NcoI	CCATGG	1 cut(s)	1920
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	8 cut(s)	621, 726, 888, 1075, 1594, 1776, 2847, 3123
NgoMIV	GCCGGC	1 cut(s)	140
NlaIV	GGNNCC	8 cut(s)	93, 993, 1326, 1507, 1533, 2815, 2997, 2998
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	5 cut(s)	85, 262, 268, 440, 1720
NsbI	TGCGCA	1 cut(s)	1908
NsiI	ATGCAT	1 cut(s)	2245
NspI	RCATGY	4 cut(s)	365, 1789, 1898, 2630
PaeI	GCATGC	1 cut(s)	2630
PagI	TCATGA	1 cut(s)	1698
PasI	CCCWGGG	2 cut(s)	275, 1321
PciI	ACATGT	1 cut(s)	1894
PciSI	GCTCTTC	1 cut(s)	2090
PctI	GAATGC	1 cut(s)	367
PdiI	GCCGGC	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	6 cut(s)	255, 377, 1795, 2017, 2264, 2693
PflFI	GACNNNGTC	1 cut(s)	803
PflMI	CCANNNNNTGG	1 cut(s)	2637
PfoI	TCCNGGA	1 cut(s)	2002
PleI	GAGTC	6 cut(s)	618, 623, 711, 1384, 2341, 2519
PpsI	GAGTC	6 cut(s)	618, 623, 711, 1384, 2341, 2519
PpuMI	RGGWCCY	1 cut(s)	2996
PscI	ACATGT	1 cut(s)	1894
PshBI	ATTAAT	1 cut(s)	1302
PsiI	TTATAA	1 cut(s)	1944
Psp124BI	GAGCTC	2 cut(s)	2150, 2706
Psp5II	RGGWCCY	1 cut(s)	2996
Psp6I	CCWGG	8 cut(s)	208, 274, 862, 946, 1141, 1320, 1681, 2589
PspFI	CCCAGC	2 cut(s)	1250, 1439
PspGI	CCWGG	8 cut(s)	208, 274, 862, 946, 1141, 1320, 1681, 2589
PspN4I	GGNNCC	8 cut(s)	93, 993, 1326, 1507, 1533, 2815, 2997, 2998
PspPI	GGNCC	6 cut(s)	206, 305, 1325, 1442, 1457, 2996
PspPPI	RGGWCCY	1 cut(s)	2996
PstI	CTGCAG	5 cut(s)	496, 1569, 1753, 2362, 2965
PstNI	CAGNNNCTG	3 cut(s)	76, 1472, 2020
PsuI	RGATCY	4 cut(s)	1075, 1594, 2847, 3123
PsyI	GACNNNGTC	1 cut(s)	803
RsaI	GTAC	8 cut(s)	336, 402, 993, 1162, 1291, 1533, 1960, 2815
RsaNI	GTAC	8 cut(s)	335, 401, 992, 1161, 1290, 1532, 1959, 2814
RseI	CAYNNNNRTG	5 cut(s)	372, 672, 1784, 2307, 2745
SacI	GAGCTC	2 cut(s)	2150, 2706
SacII	CCGCGG	1 cut(s)	36
SapI	GCTCTTC	1 cut(s)	2090
SaqAI	TTAA	6 cut(s)	1121, 1190, 1302, 1554, 1715, 1853
Sau3AI	GATC	8 cut(s)	621, 726, 888, 1075, 1594, 1776, 2847, 3123
Sau96I	GGNCC	6 cut(s)	206, 305, 1325, 1442, 1457, 2996
ScaI	AGTACT	2 cut(s)	1162, 1291
SchI	GAGTC	6 cut(s)	619, 623, 711, 1385, 2341, 2519
SduI	GDGCHC	4 cut(s)	96, 1938, 2150, 2706
SexAI	ACCWGGT	1 cut(s)	1681
SfcI	CTRYAG	7 cut(s)	222, 492, 662, 1565, 1749, 2358, 2961
Sfr303I	CCGCGG	1 cut(s)	36
SgrAI	CRCCGGYG	1 cut(s)	140
SgrBI	CCGCGG	1 cut(s)	36
SinI	GGWCC	4 cut(s)	305, 1325, 1457, 2996
SmiMI	CAYNNNNRTG	5 cut(s)	372, 672, 1784, 2307, 2745
SmlI	CTYRAG	2 cut(s)	1841, 2519
SmoI	CTYRAG	2 cut(s)	1841, 2519
SphI	GCATGC	1 cut(s)	2630
SspMI	CTAG	1 cut(s)	699
SstI	GAGCTC	2 cut(s)	2150, 2706
StyI	CCWWGG	6 cut(s)	1460, 1509, 1609, 1920, 2295, 2595
TaiI	ACGT	2 cut(s)	430, 2273
TaqI	TCGA	6 cut(s)	720, 1584, 1891, 2548, 3056, 3115
TaqII	GACCGA	1 cut(s)	322
TatI	WGTACW	3 cut(s)	334, 1160, 1289
TauI	GCSGC	3 cut(s)	76, 618, 2222
TfiI	GAWTC	6 cut(s)	255, 377, 1795, 2017, 2264, 2693
Tru1I	TTAA	6 cut(s)	1121, 1190, 1302, 1554, 1715, 1853
Tru9I	TTAA	6 cut(s)	1121, 1190, 1302, 1554, 1715, 1853
TseFI	GTSAC	5 cut(s)	85, 262, 268, 440, 1720
TseI	GCWGC	9 cut(s)	76, 491, 653, 943, 1179, 1295, 1748, 1751, 1913
Tsp45I	GTSAC	5 cut(s)	85, 262, 268, 440, 1720
TspGWI	ACGGA	3 cut(s)	1073, 1357, 2344
Tth111I	GACNNNGTC	1 cut(s)	803
Van91I	CCANNNNNTGG	1 cut(s)	2637
VpaK11BI	GGWCC	4 cut(s)	305, 1325, 1457, 2996
VspI	ATTAAT	1 cut(s)	1302
XagI	CCTNNNNNAGG	3 cut(s)	113, 1230, 2594
XapI	RAATTY	5 cut(s)	1091, 2726, 2750, 2882, 2974
XceI	RCATGY	4 cut(s)	365, 1789, 1898, 2630
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2824
XmiI	GTMKAC	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	1 cut(s)	699
ZrmI	AGTACT	2 cut(s)	1162, 1291
Zsp2I	ATGCAT	1 cut(s)	2245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.