Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8087680.1

Orthogroup ID

OG0004056

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 590

Gene Structure 589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8087680.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 307 bp

cagaccctttgcctttcagagtgcaggctcgccttcttcagcctgtaaagacagatccagtccgtccagaattccattctgctattgtcagatgggagttaaataagggattgggtaatcctggctttgttgcggagagtactggccaccagagaagcagtaatattttaagtatgaagtctgctaatgcgttgttggagttgcctgcaacaggcagtgtaatacccgctgggacttctgtgtcagccattattatttccgatataagtactgctgctattaataaaacttcctcatccccgggtcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006464 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008940 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009144 GO:0009150 GO:0009199 GO:0009205 GO:0009259 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016491 GO:0016661 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0018315 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0030151 GO:0032324 GO:0032870 GO:0034641 GO:0036211 GO:0042040 GO:0042221 GO:0042278 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046483 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051189 GO:0051716 GO:0055086 GO:0055114 GO:0061598 GO:0061599 GO:0065007 GO:0070566 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 ko04727 map00790 map01100 map04727

Pfam Domains

Protein Families

MoCF_biosynth MoeA_C MoeA_N

Protein Analysis

102

Amino Acids

10.69

Weight (kDa)

9.52

Isoelectric Point (pI)

58.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20990 AT5G20990 AT5G20990
fragaria_vesca	FvH4_3g26260 FvH4_3g26260 FvH4_3g26260 FvH4_3g26260 FvH4_3g26260
malus_domestica	MD11G1181200.v1.1
prunus_persica	Prupe.6G153900_v2.0.a1 Prupe.6G153900_v2.0.a1
pyrus_communis	pycom03g11700 pycom11g15630
rosa_chinensis	RchiOBHm_Chr5g0048741
rosa_laevigata	RLG00000034556
rosa_multiflora	Rmu_co8087680.1_g000001 Rmu_sc0003675.1_g000001 Rmu_sc0006432.1_g000010 Rmu_sc0006432.1_g000011 Rmu_sc0011208.1_g000008 Rmu_sc0027077.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033080
rosa_rugosa	Rorug05G0240900 Rorug05G0257800 Rorug05G0257900 Rorug05G0258000
rosa_samantha	Rh5AG320700 Rh5BG330500 Rh5CG356400 Rh5CG367600 Rh5DG341700
rosa_wichuraiana	Rw5G030150 Rw5G031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	240
AciI	CCGC	2 cut(s)	133, 227
AclWI	GGATC	1 cut(s)	49
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	22
AfaI	GTAC	2 cut(s)	141, 270
AfiI	CCNNNNNNNGG	1 cut(s)	211
AjnI	CCWGG	1 cut(s)	120
AlwI	GGATC	1 cut(s)	49
Ama87I	CYCGRG	1 cut(s)	300
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	274
ApoI	RAATTY	1 cut(s)	70
AseI	ATTAAT	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	2 cut(s)	301, 302
AvaI	CYCGRG	1 cut(s)	300
AvaII	GGWCC	1 cut(s)	304
BalI	TGGCCA	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	122
BcnI	CCSGG	2 cut(s)	301, 302
BisI	GCNGC	1 cut(s)	275
BlsI	GCNGC	1 cut(s)	276
BmcAI	AGTACT	2 cut(s)	141, 270
Bme1390I	CCNGG	3 cut(s)	122, 301, 302
Bme18I	GGWCC	1 cut(s)	304
BmeT110I	CYCGRG	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	1 cut(s)	305
BmrFI	CCNGG	3 cut(s)	122, 301, 302
BpuMI	CCSGG	2 cut(s)	301, 302
BsaJI	CCNNGG	2 cut(s)	299, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	2 cut(s)	58, 147
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	299, 300
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseNI	ACTGG	2 cut(s)	58, 147
BseXI	GCAGC	1 cut(s)	261
BseYI	CCCAGC	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	43
BshFI	GGCC	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	301
BslFI	GGGAC	1 cut(s)	246
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	300
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	2 cut(s)	133, 227
BspANI	GGCC	1 cut(s)	146
BspLI	GGNNCC	1 cut(s)	305
BspPI	GGATC	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	58, 147
BssECI	CCNNGG	2 cut(s)	299, 300
BssMI	GATC	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	122
BstC8I	GCNNGC	3 cut(s)	26, 30, 206
BstENI	CCTNNNNNAGG	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	54
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	3 cut(s)	120, 299, 300
BstV1I	GCAGC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	295
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	3 cut(s)	26, 30, 206
Cfr13I	GGNCC	1 cut(s)	304
Cfr9I	CCCGGG	1 cut(s)	300
Csp6I	GTAC	2 cut(s)	140, 269
CviJI	RGCY	5 cut(s)	28, 42, 125, 146, 247
CviKI_1	RGCY	5 cut(s)	28, 42, 125, 146, 247
CviQI	GTAC	2 cut(s)	140, 269
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
DrdI	GACNNNNNNGTC	1 cut(s)	240
DseDI	GACNNNNNNGTC	1 cut(s)	240
EaeI	YGGCCR	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	300
EcoNI	CCTNNNNNAGG	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	120
FaiI	YATR	2 cut(s)	175, 265
FaqI	GGGAC	1 cut(s)	246
FauI	CCCGC	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	275
FokI	GGATG	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	275
GluI	GCNGC	1 cut(s)	275
GsaI	CCCAGC	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	1 cut(s)	301
HpaII	CCGG	1 cut(s)	301
Hpy188I	TCNGA	3 cut(s)	19, 91, 261
Hpy188III	TCNNGA	1 cut(s)	67
HpyAV	CCTTC	1 cut(s)	43
HpyCH4V	TGCA	2 cut(s)	24, 208
Kzo9I	GATC	1 cut(s)	54
Lsp1109I	GCAGC	1 cut(s)	261
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	1 cut(s)	28
MflI	RGATCY	1 cut(s)	54
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	1 cut(s)	70
MluNI	TGGCCA	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	1 cut(s)	303
Mox20I	TGGCCA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	3 cut(s)	100, 169, 281
Msp20I	TGGCCA	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	229
MspI	CCGG	1 cut(s)	301
MspR9I	CCNGG	3 cut(s)	122, 301, 302
MvaI	CCWGG	1 cut(s)	122
NciI	CCSGG	2 cut(s)	301, 302
NdeII	GATC	1 cut(s)	54
NlaIV	GGNNCC	1 cut(s)	305
PkrI	GCNGC	1 cut(s)	276
PshBI	ATTAAT	1 cut(s)	281
Psp6I	CCWGG	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	305
PspPI	GGNCC	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	54
RsaI	GTAC	2 cut(s)	141, 270
RsaNI	GTAC	2 cut(s)	140, 269
SaqAI	TTAA	3 cut(s)	100, 169, 281
SatI	GCNGC	1 cut(s)	275
Sau3AI	GATC	1 cut(s)	54
Sau96I	GGNCC	1 cut(s)	304
ScaI	AGTACT	2 cut(s)	141, 270
ScrFI	CCNGG	3 cut(s)	122, 301, 302
SinI	GGWCC	1 cut(s)	304
SmaI	CCCGGG	1 cut(s)	302
Sse9I	AATT	1 cut(s)	70
SsiI	CCGC	2 cut(s)	133, 227
SspI	AATATT	1 cut(s)	165
StyD4I	CCNGG	3 cut(s)	120, 299, 300
TasI	AATT	1 cut(s)	70
TatI	WGTACW	2 cut(s)	139, 268
Tru1I	TTAA	3 cut(s)	100, 169, 281
Tru9I	TTAA	3 cut(s)	100, 169, 281
TscAI	CASTG	1 cut(s)	222
TseI	GCWGC	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	190
TspGWI	ACGGA	1 cut(s)	52
TspMI	CCCGGG	1 cut(s)	300
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	304
VspI	ATTAAT	1 cut(s)	281
XagI	CCTNNNNNAGG	1 cut(s)	209
XapI	RAATTY	1 cut(s)	70
XmaI	CCCGGG	1 cut(s)	300
ZrmI	AGTACT	2 cut(s)	141, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.