Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003675.1

Orthogroup ID

OG0004056

Physical Location & Seq

Genomic Coordinates Forward (+)

618 .. 1318

Gene Structure 701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003675.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgatggcggagaccaaacccgcactgctcttcatggaggcggctctggaaatagttctgagagttatccagcggctgccacctgtcaccgtgcccctccatgatgccctcgagaaggtcttggccgaggacattcgtgccgtcgaccctttgcctcctttctctgcatccatcaaggatggatatgcagtggtagcttcagacgggcctggagagtatcctgtagttgctgaagcaagagccggtagcgatggaatcggtgtcactctcacccctgggactgtggcatatgttactactggaggaccgatacctgatggtgctgatgcagtcgtacaagttgaggacactgaacaggtgcatgtgcattcacatgaatcaaagcgagtgagaatactggttcagacgagcaaaggagttgatatccgtccagtggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006464 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008940 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009144 GO:0009150 GO:0009199 GO:0009205 GO:0009259 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016491 GO:0016661 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0018315 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0030151 GO:0032324 GO:0032870 GO:0034641 GO:0036211 GO:0042040 GO:0042221 GO:0042278 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046483 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051189 GO:0051716 GO:0055086 GO:0055114 GO:0061598 GO:0061599 GO:0065007 GO:0070566 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 ko04727 map00790 map01100 map04727

Pfam Domains

Protein Families

MoCF_biosynth MoeA_C MoeA_N

Protein Analysis

146

Amino Acids

15.41

Weight (kDa)

4.85

Isoelectric Point (pI)

27.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20990 AT5G20990 AT5G20990
fragaria_vesca	FvH4_3g26260 FvH4_3g26260 FvH4_3g26260 FvH4_3g26260 FvH4_3g26260
malus_domestica	MD11G1181200.v1.1
prunus_persica	Prupe.6G153900_v2.0.a1 Prupe.6G153900_v2.0.a1
pyrus_communis	pycom03g11700 pycom11g15630
rosa_chinensis	RchiOBHm_Chr5g0048741
rosa_laevigata	RLG00000034556
rosa_multiflora	Rmu_co8087680.1_g000001 Rmu_sc0003675.1_g000001 Rmu_sc0006432.1_g000010 Rmu_sc0006432.1_g000011 Rmu_sc0011208.1_g000008 Rmu_sc0027077.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033080
rosa_rugosa	Rorug05G0240900 Rorug05G0257800 Rorug05G0257900 Rorug05G0258000
rosa_samantha	Rh5AG320700 Rh5BG330500 Rh5CG356400 Rh5CG367600 Rh5DG341700
rosa_wichuraiana	Rw5G030150 Rw5G031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	144
AciI	CCGC	4 cut(s)	8, 21, 41, 73
AcoI	YGGCCR	1 cut(s)	123
AcuI	CTGAAG	2 cut(s)	183, 252
AfaI	GTAC	1 cut(s)	336
AfiI	CCNNNNNNNGG	2 cut(s)	115, 433
AjnI	CCWGG	2 cut(s)	208, 274
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	5
AlwNI	CAGNNNCTG	1 cut(s)	76
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	2 cut(s)	123, 206
ApeKI	GCWGC	1 cut(s)	76
Asp700I	GAANNNNTTC	1 cut(s)	54
AspS9I	GGNCC	2 cut(s)	206, 305
AsuHPI	GGTGA	2 cut(s)	79, 262
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	63
BccI	CCATC	4 cut(s)	173, 179, 245, 311
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	2 cut(s)	210, 276
BciVI	GTATCC	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	5
BfmI	CTRYAG	1 cut(s)	222
BfuI	GTATCC	1 cut(s)	228
BisI	GCNGC	3 cut(s)	42, 74, 77
BlsI	GCNGC	3 cut(s)	43, 75, 78
Bme1390I	CCNGG	2 cut(s)	210, 276
Bme18I	GGWCC	1 cut(s)	305
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	2 cut(s)	206, 305
BmrFI	CCNGG	2 cut(s)	210, 276
BmsI	GCATC	3 cut(s)	94, 176, 316
BpmI	CTGGAG	2 cut(s)	231, 321
BsaI	GGTCTC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	126, 274, 275
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 433
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	3 cut(s)	304, 402, 431
BseBI	CCWGG	2 cut(s)	210, 276
BseDI	CCNNGG	3 cut(s)	126, 274, 275
BseGI	GGATG	2 cut(s)	167, 184
BseLI	CCNNNNNNNGG	2 cut(s)	115, 433
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	3 cut(s)	304, 402, 431
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	63
BshFI	GGCC	2 cut(s)	125, 208
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	2 cut(s)	115, 433
BsmAI	GTCTC	1 cut(s)	5
BsmFI	GGGAC	1 cut(s)	292
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	125, 208
Bso31I	GGTCTC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	96
BspACI	CCGC	4 cut(s)	8, 21, 41, 73
BspANI	GGCC	2 cut(s)	125, 208
BspCNI	CTCAG	1 cut(s)	51
BspQI	GCTCTTC	1 cut(s)	35
BspTNI	GGTCTC	1 cut(s)	5
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	3 cut(s)	304, 402, 431
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	3 cut(s)	126, 274, 275
Bst2UI	CCWGG	2 cut(s)	210, 276
Bst4CI	ACNGT	2 cut(s)	91, 283
Bst6I	CTCTTC	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	59
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	167, 184
BstMAI	GTCTC	1 cut(s)	5
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	2 cut(s)	210, 276
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	208, 274
BstSFI	CTRYAG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	63
BsuI	GTATCC	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	125, 208
BtgZI	GCGATG	1 cut(s)	264
BtsCI	GGATG	2 cut(s)	167, 184
BtsI	GCAGTG	2 cut(s)	23, 195
BtsIMutI	CAGTG	4 cut(s)	23, 195, 348, 438
CaiI	CAGNNNCTG	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	2 cut(s)	206, 305
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	4 cut(s)	34, 101, 362, 374
CviJI	RGCY	6 cut(s)	44, 76, 125, 197, 208, 242
CviKI_1	RGCY	6 cut(s)	44, 76, 125, 197, 208, 242
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	1 cut(s)	59
EaeI	YGGCCR	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
EciI	GGCGGA	1 cut(s)	23
Eco31I	GGTCTC	1 cut(s)	5
Eco32I	GATATC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	305
Eco57I	CTGAAG	2 cut(s)	183, 252
Eco88I	CYCGRG	1 cut(s)	110
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoRII	CCWGG	2 cut(s)	208, 274
EcoRV	GATATC	1 cut(s)	424
FaeI	CATG	4 cut(s)	37, 104, 365, 377
FaiI	YATR	8 cut(s)	35, 102, 186, 289, 291, 363, 375, 439
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	4 cut(s)	33, 100, 361, 373
FauI	CCCGC	1 cut(s)	28
FauNDI	CATATG	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	3 cut(s)	42, 74, 77
FokI	GGATG	2 cut(s)	154, 191
Fsp4HI	GCNGC	3 cut(s)	42, 74, 77
GluI	GCNGC	3 cut(s)	42, 74, 77
GsuI	CTGGAG	2 cut(s)	231, 321
HaeIII	GGCC	2 cut(s)	125, 208
HapII	CCGG	1 cut(s)	243
Hin1II	CATG	4 cut(s)	37, 104, 365, 377
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	2 cut(s)	255, 377
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	2 cut(s)	79, 262
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	3 cut(s)	60, 202, 405
Hpy188III	TCNNGA	2 cut(s)	47, 112
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	2 cut(s)	91, 283
HpyCH4V	TGCA	5 cut(s)	167, 188, 329, 361, 367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	1 cut(s)	59
Hsp92II	CATG	4 cut(s)	37, 104, 365, 377
LguI	GCTCTTC	1 cut(s)	35
Lsp1109I	GCAGC	1 cut(s)	63
LweI	GCATC	3 cut(s)	94, 176, 316
MaeIII	GTNAC	3 cut(s)	85, 262, 292
MboII	GAAGA	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	96
MnlI	CCTC	7 cut(s)	31, 107, 119, 121, 165, 296, 337
MroXI	GAANNNNTTC	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	372
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	2 cut(s)	210, 276
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	2 cut(s)	210, 276
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeI	CATATG	1 cut(s)	289
NlaIII	CATG	4 cut(s)	37, 104, 365, 377
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	2 cut(s)	85, 262
NspI	RCATGY	1 cut(s)	365
PaeR7I	CTCGAG	1 cut(s)	110
PasI	CCCWGGG	1 cut(s)	275
PciSI	GCTCTTC	1 cut(s)	35
PctI	GAATGC	1 cut(s)	367
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	255, 377
PkrI	GCNGC	3 cut(s)	43, 75, 78
Psp6I	CCWGG	2 cut(s)	208, 274
PspGI	CCWGG	2 cut(s)	208, 274
PspPI	GGNCC	2 cut(s)	206, 305
PstNI	CAGNNNCTG	1 cut(s)	76
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
RseI	CAYNNNNRTG	1 cut(s)	372
SalI	GTCGAC	1 cut(s)	143
SapI	GCTCTTC	1 cut(s)	35
SatI	GCNGC	3 cut(s)	42, 74, 77
Sau96I	GGNCC	2 cut(s)	206, 305
ScrFI	CCNGG	2 cut(s)	210, 276
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	5 cut(s)	85, 120, 199, 316, 360
SfaNI	GCATC	3 cut(s)	94, 176, 316
SfcI	CTRYAG	1 cut(s)	222
Sfr274I	CTCGAG	1 cut(s)	110
SinI	GGWCC	1 cut(s)	305
SlaI	CTCGAG	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SsiI	CCGC	4 cut(s)	8, 21, 41, 73
StyD4I	CCNGG	2 cut(s)	208, 274
TaaI	ACNGT	2 cut(s)	91, 283
TaqI	TCGA	2 cut(s)	111, 144
TaqII	GACCGA	1 cut(s)	322
TauI	GCSGC	2 cut(s)	44, 76
TfiI	GAWTC	2 cut(s)	255, 377
TscAI	CASTG	4 cut(s)	30, 195, 355, 438
TseFI	GTSAC	2 cut(s)	85, 262
TseI	GCWGC	1 cut(s)	76
Tsp45I	GTSAC	2 cut(s)	85, 262
TspDTI	ATGAA	2 cut(s)	22, 390
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	4 cut(s)	30, 195, 355, 438
VpaK11BI	GGWCC	1 cut(s)	305
XagI	CCTNNNNNAGG	1 cut(s)	113
XceI	RCATGY	1 cut(s)	365
XhoI	CTCGAG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.