Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006432.1

Orthogroup ID

OG0004056

Physical Location & Seq

Genomic Coordinates Forward (+)

40841 .. 44192

Gene Structure 3352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006432.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atgatggcggagaccaaacccgcaatgctctccgcggaggaggctctggaaatagttctgagagttatccagcggctgccacctgtcacggtgcccttccacgatgccctcgggaaggtcttggccgaggacattcgcgccggcgaccctttgcctcctttccctgcatccatcaaggatggatatgcagtggtagcttcagatgggcctggagagtatcctgtagttggtgaggcaagagctggtagcgatggaatcggcgtcactgtcacccctgggactgtggcatatgttactactggaggaccgatacctgatggtgctgatgcagttgtacaagttgaggacactgaacaggtgcatgtgcattcacatgaatcaaggcgagtgggaatactggtacagacgagcaaaggagttgatatccgtccagtgggatgtgacattgagaaagatgatgtagtattgatatatggacaaagaatctgcagaaattgttttgtgcagatcagggactgcaaccgtgctatgataatggcagcttcactacagcatcattgcgaagttagtgattttggcataactagagatgatgaagaaggactagaaaagatcatagatactgtcatttctgctggaattgatattcttctcacctctggaggtgtttctatgggagataaggactttgtcaaaccactgttgcataagagagggacactgcatttcagtaaggtgcggatgaaaccagggaaacccttgactttttgcggagatcaattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006464 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008940 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009144 GO:0009150 GO:0009199 GO:0009205 GO:0009259 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016491 GO:0016661 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0018315 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0030151 GO:0032324 GO:0032870 GO:0034641 GO:0036211 GO:0042040 GO:0042221 GO:0042278 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046483 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051189 GO:0051716 GO:0055086 GO:0055114 GO:0061598 GO:0061599 GO:0065007 GO:0070566 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 ko04727 map00790 map01100 map04727

Pfam Domains

Protein Families

MoCF_biosynth MoeA_C MoeA_N

Protein Analysis

261

Amino Acids

28.01

Weight (kDa)

5.16

Isoelectric Point (pI)

27.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20990 AT5G20990 AT5G20990
fragaria_vesca	FvH4_3g26260 FvH4_3g26260 FvH4_3g26260 FvH4_3g26260 FvH4_3g26260
malus_domestica	MD11G1181200.v1.1
prunus_persica	Prupe.6G153900_v2.0.a1 Prupe.6G153900_v2.0.a1
pyrus_communis	pycom03g11700 pycom11g15630
rosa_chinensis	RchiOBHm_Chr5g0048741
rosa_laevigata	RLG00000034556
rosa_multiflora	Rmu_co8087680.1_g000001 Rmu_sc0003675.1_g000001 Rmu_sc0006432.1_g000010 Rmu_sc0006432.1_g000011 Rmu_sc0011208.1_g000008 Rmu_sc0027077.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033080
rosa_rugosa	Rorug05G0240900 Rorug05G0257800 Rorug05G0257900 Rorug05G0258000
rosa_samantha	Rh5AG320700 Rh5BG330500 Rh5CG356400 Rh5CG367600 Rh5DG341700
rosa_wichuraiana	Rw5G030150 Rw5G031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	91
AccII	CGCG	2 cut(s)	35, 138
AciI	CCGC	7 cut(s)	8, 21, 33, 35, 73, 739, 771
AcoI	YGGCCR	1 cut(s)	123
AcuI	CTGAAG	1 cut(s)	183
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	2 cut(s)	336, 402
AfiI	CCNNNNNNNGG	3 cut(s)	115, 227, 433
AjnI	CCWGG	3 cut(s)	208, 274, 748
AluBI	AGCT	3 cut(s)	197, 242, 542
AluI	AGCT	3 cut(s)	197, 242, 542
Alw26I	GTCTC	1 cut(s)	5
AlwNI	CAGNNNCTG	2 cut(s)	76, 516
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	2 cut(s)	123, 206
ApeKI	GCWGC	2 cut(s)	76, 539
Asp700I	GAANNNNTTC	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	2 cut(s)	206, 305
AsuHPI	GGTGA	3 cut(s)	242, 262, 646
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	96
BanI	GGYRCC	1 cut(s)	91
BbvI	GCAGC	2 cut(s)	63, 551
BccI	CCATC	5 cut(s)	173, 179, 197, 245, 311
BciT130I	CCWGG	3 cut(s)	210, 276, 750
BciVI	GTATCC	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	2 cut(s)	585, 605
BfmI	CTRYAG	3 cut(s)	222, 487, 548
BfuI	GTATCC	1 cut(s)	228
BisI	GCNGC	3 cut(s)	74, 77, 540
BlsI	GCNGC	3 cut(s)	75, 78, 541
Bme1390I	CCNGG	3 cut(s)	210, 276, 750
Bme18I	GGWCC	1 cut(s)	305
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	2 cut(s)	206, 305
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	3 cut(s)	210, 276, 750
BmsI	GCATC	4 cut(s)	94, 176, 316, 562
BpmI	CTGGAG	3 cut(s)	231, 321, 681
BsaHI	GRCGYC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	5
BsaJI	CCNNGG	6 cut(s)	33, 109, 126, 274, 275, 749
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 227, 433
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	3 cut(s)	304, 402, 431
Bse3DI	GCAATG	2 cut(s)	30, 556
BseBI	CCWGG	3 cut(s)	210, 276, 750
BseDI	CCNNGG	6 cut(s)	33, 109, 126, 274, 275, 749
BseGI	GGATG	4 cut(s)	167, 184, 443, 747
BseLI	CCNNNNNNNGG	3 cut(s)	115, 227, 433
BseMI	GCAATG	2 cut(s)	30, 556
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	3 cut(s)	304, 402, 431
BseRI	GAGGAG	1 cut(s)	53
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	63, 551
BsgI	GTGCAG	1 cut(s)	524
Bsh1236I	CGCG	2 cut(s)	35, 138
BshFI	GGCC	2 cut(s)	125, 208
BshNI	GGYRCC	1 cut(s)	91
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	3 cut(s)	292, 527, 730
BslI	CCNNNNNNNGG	3 cut(s)	115, 227, 433
BsmAI	GTCTC	1 cut(s)	5
BsmFI	GGGAC	3 cut(s)	292, 527, 730
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	125, 208
Bso31I	GGTCTC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp1407I	TGTACA	1 cut(s)	334
Bsp143I	GATC	3 cut(s)	507, 612, 775
BspACI	CCGC	7 cut(s)	8, 21, 33, 35, 73, 739, 771
BspANI	GGCC	2 cut(s)	125, 208
BspCNI	CTCAG	1 cut(s)	51
BspFNI	CGCG	2 cut(s)	35, 138
BspLI	GGNNCC	1 cut(s)	93
BspMAI	CTGCAG	1 cut(s)	491
BspT107I	GGYRCC	1 cut(s)	91
BspTNI	GGTCTC	1 cut(s)	5
BsrDI	GCAATG	2 cut(s)	30, 556
BsrFI	RCCGGY	1 cut(s)	140
BsrGI	TGTACA	1 cut(s)	334
BsrI	ACTGG	3 cut(s)	304, 402, 431
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	6 cut(s)	33, 109, 126, 274, 275, 749
BssMI	GATC	3 cut(s)	507, 612, 775
BssNI	GRCGYC	1 cut(s)	261
Bst2UI	CCWGG	3 cut(s)	210, 276, 750
Bst4CI	ACNGT	6 cut(s)	91, 268, 283, 524, 625, 702
BstACI	GRCGYC	1 cut(s)	261
BstAUI	TGTACA	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	59
BstDSI	CCRYGG	1 cut(s)	33
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	4 cut(s)	167, 184, 443, 747
BstFNI	CGCG	2 cut(s)	35, 138
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	3 cut(s)	510, 615, 778
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	3 cut(s)	507, 612, 775
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 194
BstNI	CCWGG	3 cut(s)	210, 276, 750
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	3 cut(s)	208, 274, 748
BstSFI	CTRYAG	3 cut(s)	222, 487, 548
BstSLI	GKGCMC	1 cut(s)	96
BstUI	CGCG	2 cut(s)	35, 138
BstV1I	GCAGC	2 cut(s)	63, 551
BsuI	GTATCC	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	125, 208
BtgI	CCRYGG	1 cut(s)	33
BtgZI	GCGATG	1 cut(s)	264
BtsCI	GGATG	4 cut(s)	167, 184, 443, 747
BtsI	GCAGTG	2 cut(s)	195, 719
BtsIMutI	CAGTG	6 cut(s)	195, 264, 348, 438, 698, 719
Cac8I	GCNNGC	1 cut(s)	142
CaiI	CAGNNNCTG	2 cut(s)	76, 516
CfoI	GCGC	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	206, 305
Cfr42I	CCGCGG	1 cut(s)	36
CseI	GACGC	1 cut(s)	250
Csp6I	GTAC	2 cut(s)	335, 401
CspCI	CAANNNNNGTGG	2 cut(s)	369, 404
CviAII	CATG	2 cut(s)	362, 374
CviJI	RGCY	7 cut(s)	44, 76, 125, 197, 208, 242, 542
CviKI_1	RGCY	7 cut(s)	44, 76, 125, 197, 208, 242, 542
CviQI	GTAC	2 cut(s)	335, 401
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	3 cut(s)	509, 614, 777
DpnII	GATC	3 cut(s)	507, 612, 775
EaeI	YGGCCR	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	23
Eco31I	GGTCTC	1 cut(s)	5
Eco32I	GATATC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	110
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoRII	CCWGG	3 cut(s)	208, 274, 748
EcoRV	GATATC	1 cut(s)	424
FaeI	CATG	2 cut(s)	365, 377
FaqI	GGGAC	3 cut(s)	292, 527, 730
FatI	CATG	2 cut(s)	361, 373
FauI	CCCGC	1 cut(s)	28
FauNDI	CATATG	1 cut(s)	289
Fnu4HI	GCNGC	3 cut(s)	74, 77, 540
FokI	GGATG	4 cut(s)	154, 191, 450, 754
Fsp4HI	GCNGC	3 cut(s)	74, 77, 540
FspBI	CTAG	2 cut(s)	585, 605
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	3 cut(s)	74, 77, 540
GsuI	CTGGAG	3 cut(s)	231, 321, 681
HaeIII	GGCC	2 cut(s)	125, 208
HapII	CCGG	1 cut(s)	141
HgaI	GACGC	1 cut(s)	250
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	2 cut(s)	365, 377
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HinfI	GANTC	3 cut(s)	255, 377, 483
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	3 cut(s)	242, 262, 646
Hpy188I	TCNGA	3 cut(s)	60, 202, 785
Hpy188III	TCNNGA	3 cut(s)	47, 112, 660
HpyAV	CCTTC	3 cut(s)	106, 109, 593
HpyCH4III	ACNGT	6 cut(s)	91, 268, 283, 524, 625, 702
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 194
HpyF3I	CTNAG	1 cut(s)	59
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	2 cut(s)	365, 377
HspAI	GCGC	1 cut(s)	138
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
KspI	CCGCGG	1 cut(s)	36
Kzo9I	GATC	3 cut(s)	507, 612, 775
Lsp1109I	GCAGC	2 cut(s)	63, 551
LweI	GCATC	4 cut(s)	94, 176, 316, 562
MaeI	CTAG	2 cut(s)	585, 605
MaeIII	GTNAC	5 cut(s)	85, 262, 268, 292, 440
MalI	GATC	3 cut(s)	509, 614, 777
MboI	GATC	3 cut(s)	507, 612, 775
MboII	GAAGA	2 cut(s)	608, 641
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	3 cut(s)	493, 639, 779
MreI	CGCCGGCG	1 cut(s)	140
MroNI	GCCGGC	1 cut(s)	140
MroXI	GAANNNNTTC	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	372
MspA1I	CMGCKG	2 cut(s)	35, 73
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	3 cut(s)	210, 276, 750
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	3 cut(s)	210, 276, 750
MvnI	CGCG	2 cut(s)	35, 138
MwoI	GCNNNNNNNGC	2 cut(s)	41, 194
NaeI	GCCGGC	1 cut(s)	142
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	3 cut(s)	507, 612, 775
NgoMIV	GCCGGC	1 cut(s)	140
NlaIII	CATG	2 cut(s)	365, 377
NlaIV	GGNNCC	1 cut(s)	93
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	4 cut(s)	85, 262, 268, 440
NspI	RCATGY	1 cut(s)	365
PasI	CCCWGGG	1 cut(s)	275
PctI	GAATGC	1 cut(s)	367
PdiI	GCCGGC	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	3 cut(s)	255, 377, 483
PflFI	GACNNNGTC	1 cut(s)	689
PkrI	GCNGC	3 cut(s)	75, 78, 541
Psp6I	CCWGG	3 cut(s)	208, 274, 748
PspGI	CCWGG	3 cut(s)	208, 274, 748
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	2 cut(s)	206, 305
PstI	CTGCAG	1 cut(s)	491
PstNI	CAGNNNCTG	2 cut(s)	76, 516
PsyI	GACNNNGTC	1 cut(s)	689
RsaI	GTAC	2 cut(s)	336, 402
RsaNI	GTAC	2 cut(s)	335, 401
RseI	CAYNNNNRTG	1 cut(s)	372
SacII	CCGCGG	1 cut(s)	36
SatI	GCNGC	3 cut(s)	74, 77, 540
Sau3AI	GATC	3 cut(s)	507, 612, 775
Sau96I	GGNCC	2 cut(s)	206, 305
ScrFI	CCNGG	3 cut(s)	210, 276, 750
SduI	GDGCHC	1 cut(s)	96
SfaNI	GCATC	4 cut(s)	94, 176, 316, 562
SfcI	CTRYAG	3 cut(s)	222, 487, 548
Sfr303I	CCGCGG	1 cut(s)	36
SgrAI	CRCCGGYG	1 cut(s)	140
SgrBI	CCGCGG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	372
Sse9I	AATT	3 cut(s)	493, 639, 779
SsiI	CCGC	7 cut(s)	8, 21, 33, 35, 73, 739, 771
SspMI	CTAG	2 cut(s)	585, 605
StyD4I	CCNGG	3 cut(s)	208, 274, 748
TaaI	ACNGT	6 cut(s)	91, 268, 283, 524, 625, 702
TaqII	GACCGA	1 cut(s)	322
TasI	AATT	3 cut(s)	493, 639, 779
TatI	WGTACW	1 cut(s)	334
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	3 cut(s)	255, 377, 483
TscAI	CASTG	6 cut(s)	195, 271, 355, 438, 705, 726
TseFI	GTSAC	4 cut(s)	85, 262, 268, 440
TseI	GCWGC	2 cut(s)	76, 539
Tsp45I	GTSAC	4 cut(s)	85, 262, 268, 440
TspDTI	ATGAA	3 cut(s)	390, 609, 758
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	6 cut(s)	195, 271, 355, 438, 705, 726
Tth111I	GACNNNGTC	1 cut(s)	689
VpaK11BI	GGWCC	1 cut(s)	305
XagI	CCTNNNNNAGG	1 cut(s)	113
XceI	RCATGY	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	2 cut(s)	585, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.