Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004056

Physical Location & Seq

Genomic Coordinates Reverse (-)

28966867 .. 28972276

Gene Structure 5410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0258000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAGCTGAAAACGAATAGGAGAGGTTTGGTCGCTGGGGTGGGAAAGAGAAAGAGGAGAGATCCAAGATTGTGGTGGACTTCCGGGGGAAGGTTTGAGTTTGTTTCTGGAGAGGTGGATGCTAAAATTTTGATCGAGTTTGGGGGAGAGCTTTCAGCAGGAGAAGAGTGTAGAGATGAAGAAGGGATATTCTTGGTATATTCAGTCAGTAGCTTTGAAAGCACCTGTGTATTCAATTGGACCAATTTAGGAGTGGAGTGCCTTTTGTGTAATAAAAAGTTTCTGGTCAAGGCTGAAGTAGACAATGGAGCTGAGGAGTATTTTCCTATGTATCAATTGGAACTGTCGGAACTGTCAAAGGGTGACAAGTTGTTGGCGTCGCAAAATGCAGAGAGCCATCAGAGGACGACAAAGTTACTAGATGAAGAAATTGAAGAGGACGAGATGTTCTGGAATCAGGAGGCTCTTAAAGAGGAGGAAGAAGATGATAACTATGAAGTGGAGCTGAAAGTTGTTGATTTGTTTGATAATGACTTGGTTAAAGATATGCTGATGAAAAAAGTTGATGCATTGATGAAAGCCATGGAGCAGAGTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006464 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008940 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009144 GO:0009150 GO:0009199 GO:0009205 GO:0009259 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016491 GO:0016661 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0018315 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0030151 GO:0032324 GO:0032870 GO:0034641 GO:0036211 GO:0042040 GO:0042221 GO:0042278 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046483 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051189 GO:0051716 GO:0055086 GO:0055114 GO:0061598 GO:0061599 GO:0065007 GO:0070566 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 ko04727 map00790 map01100 map04727

Pfam Domains

Protein Families

MoCF_biosynth MoeA_C MoeA_N

Protein Analysis

199

Amino Acids

22.92

Weight (kDa)

4.49

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20990 AT5G20990 AT5G20990
fragaria_vesca	FvH4_3g26260 FvH4_3g26260 FvH4_3g26260 FvH4_3g26260 FvH4_3g26260
malus_domestica	MD11G1181200.v1.1
prunus_persica	Prupe.6G153900_v2.0.a1 Prupe.6G153900_v2.0.a1
pyrus_communis	pycom03g11700 pycom11g15630
rosa_chinensis	RchiOBHm_Chr5g0048741
rosa_laevigata	RLG00000034556
rosa_multiflora	Rmu_co8087680.1_g000001 Rmu_sc0003675.1_g000001 Rmu_sc0006432.1_g000010 Rmu_sc0006432.1_g000011 Rmu_sc0011208.1_g000008 Rmu_sc0027077.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033080
rosa_rugosa	Rorug05G0240900 Rorug05G0257800 Rorug05G0257900 Rorug05G0258000
rosa_samantha	Rh5AG320700 Rh5BG330500 Rh5CG356400 Rh5CG367600 Rh5DG341700
rosa_wichuraiana	Rw5G030150 Rw5G031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	300
AclWI	GGATC	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	315
AcyI	GRCGYC	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	90
AgsI	TTSAA	3 cut(s)	218, 235, 434
AloI	GAACNNNNNNTCC	2 cut(s)	431, 463
AluBI	AGCT	5 cut(s)	7, 151, 213, 311, 505
AluI	AGCT	5 cut(s)	7, 151, 213, 311, 505
AlwI	GGATC	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	240
AsuC2I	CCSGG	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	240
BbvCI	CCTCAGC	1 cut(s)	312
BccI	CCATC	1 cut(s)	405
BcnI	CCSGG	1 cut(s)	85
BfaI	CTAG	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	85
Bme18I	GGWCC	1 cut(s)	240
BmgT120I	GGNCC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	2 cut(s)	109, 556
BpmI	CTGGAG	1 cut(s)	129
Bpu10I	CCTNAGC	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	85
BsaHI	GRCGYC	1 cut(s)	377
BsaJI	CCNNGG	2 cut(s)	84, 582
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	84, 582
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	303
BseRI	GAGGAG	3 cut(s)	70, 329, 488
BseYI	CCCAGC	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	61, 132
Bsp19I	CCATGG	1 cut(s)	582
BspCNI	CTCAG	1 cut(s)	304
BspPI	GGATC	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	84, 582
BssMI	GATC	2 cut(s)	61, 132
BssNI	GRCGYC	1 cut(s)	377
BssT1I	CCWWGG	1 cut(s)	582
Bst4CI	ACNGT	2 cut(s)	345, 354
Bst6I	CTCTTC	2 cut(s)	159, 429
BstACI	GRCGYC	1 cut(s)	377
BstDEI	CTNAG	1 cut(s)	312
BstDSI	CCRYGG	1 cut(s)	582
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	2 cut(s)	64, 135
BstMBI	GATC	2 cut(s)	61, 132
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	61
BstXI	CCANNNNNNTGG	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	61
BtgI	CCRYGG	1 cut(s)	582
BtsCI	GGATG	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	240
CseI	GACGC	1 cut(s)	366
CviAII	CATG	1 cut(s)	583
CviJI	RGCY	9 cut(s)	7, 151, 213, 293, 311, 396, 464, 505, 581
CviKI_1	RGCY	9 cut(s)	7, 151, 213, 293, 311, 396, 464, 505, 581
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	2 cut(s)	63, 134
DpnII	GATC	2 cut(s)	61, 132
Eam1104I	CTCTTC	2 cut(s)	159, 429
EarI	CTCTTC	2 cut(s)	159, 429
Eco130I	CCWWGG	1 cut(s)	582
Eco47I	GGWCC	1 cut(s)	240
Eco57I	CTGAAG	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	582
EcoT22I	ATGCAT	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	582
FaeI	CATG	1 cut(s)	586
FaiI	YATR	6 cut(s)	199, 329, 495, 548, 584, 598
FatI	CATG	1 cut(s)	582
FblI	GTMKAC	1 cut(s)	300
FokI	GGATG	1 cut(s)	131
FspBI	CTAG	1 cut(s)	419
GsaI	CCCAGC	1 cut(s)	39
GsuI	CTGGAG	1 cut(s)	129
HapII	CCGG	1 cut(s)	84
HgaI	GACGC	1 cut(s)	366
Hin1I	GRCGYC	1 cut(s)	377
Hin1II	CATG	1 cut(s)	586
HinfI	GANTC	2 cut(s)	454, 592
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	2 cut(s)	78, 301
Hpy188I	TCNGA	2 cut(s)	349, 402
Hpy188III	TCNNGA	3 cut(s)	108, 451, 458
Hpy8I	GTNNAC	2 cut(s)	78, 301
Hpy99I	CGWCG	1 cut(s)	382
HpyAV	CCTTC	2 cut(s)	84, 176
HpyCH4III	ACNGT	2 cut(s)	345, 354
HpyCH4V	TGCA	2 cut(s)	389, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpyF3I	CTNAG	1 cut(s)	312
Hsp92I	GRCGYC	1 cut(s)	377
Hsp92II	CATG	1 cut(s)	586
Kzo9I	GATC	2 cut(s)	61, 132
LmnI	GCTCC	4 cut(s)	4, 308, 502, 586
LpnPI	CCDG	8 cut(s)	21, 93, 97, 144, 238, 269, 436, 443
LweI	GCATC	2 cut(s)	109, 556
MaeI	CTAG	1 cut(s)	419
MaeIII	GTNAC	2 cut(s)	362, 414
MalI	GATC	2 cut(s)	63, 134
MboI	GATC	2 cut(s)	61, 132
MboII	GAAGA	6 cut(s)	176, 191, 437, 446, 491, 494
MfeI	CAATTG	2 cut(s)	235, 335
MflI	RGATCY	1 cut(s)	61
MluCI	AATT	5 cut(s)	126, 235, 244, 335, 429
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	9 cut(s)	17, 48, 106, 307, 396, 430, 454, 466, 469
Mph1103I	ATGCAT	1 cut(s)	571
MseI	TTAA	2 cut(s)	468, 540
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	85
MunI	CAATTG	2 cut(s)	235, 335
MwoI	GCNNNNNNNGC	1 cut(s)	219
NciI	CCSGG	1 cut(s)	85
NcoI	CCATGG	1 cut(s)	582
NdeII	GATC	2 cut(s)	61, 132
NlaIII	CATG	1 cut(s)	586
NmuCI	GTSAC	1 cut(s)	362
NsiI	ATGCAT	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	454
PspFI	CCCAGC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	61
SaqAI	TTAA	2 cut(s)	468, 540
Sau3AI	GATC	2 cut(s)	61, 132
Sau96I	GGNCC	1 cut(s)	240
ScrFI	CCNGG	1 cut(s)	85
SetI	ASST	9 cut(s)	9, 28, 95, 117, 153, 215, 227, 313, 507
SfaNI	GCATC	2 cut(s)	109, 556
SinI	GGWCC	1 cut(s)	240
Sse9I	AATT	5 cut(s)	126, 235, 244, 335, 429
SspMI	CTAG	1 cut(s)	419
StyD4I	CCNGG	1 cut(s)	83
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	2 cut(s)	345, 354
TaqI	TCGA	1 cut(s)	135
TasI	AATT	5 cut(s)	126, 235, 244, 335, 429
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	2 cut(s)	468, 540
Tru9I	TTAA	2 cut(s)	468, 540
TseFI	GTSAC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	5 cut(s)	192, 438, 510, 569, 590
VpaK11BI	GGWCC	1 cut(s)	240
XapI	RAATTY	1 cut(s)	126
XcmI	CCANNNNNNNNNTGG	2 cut(s)	72, 250
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	1 cut(s)	419
Zsp2I	ATGCAT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.