Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004056

Physical Location & Seq

Genomic Coordinates Forward (+)

28958684 .. 28960923

Gene Structure 2240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0257900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCAGCCATGGCTGCACTCCAGAGCTCCATGACCTCGCTTTCTCTCTCCTCTAACTCCTTCCTGGGCCAACGCCTCTCACCCCTCACTATTTATCCTGTTCCGGGTAAGTTAACATCAAAGCCTTGTCTGATTGTAGTGAAGTTAAAGCAATGGGAGCGGAAGGAATGCAAGCCAAACAGTCTTCCAATTTTACACAAAATGCATGTTAAGGTTGGGGATACAGTGAAAATCATATCTGGACATGAAAAGGGTAAAACTGGAGAGATAACAAAGATCTTTAAGCACAATAGTACTGTGATAGTTAAAGACATAAATTTGAAGACAAAGCATATGAAGAGCAGAGAAGAGGGTGAACCAGGACAGATTATTAAGGTAGAAGGAGCTATCCACAGTTCAAATGTGATGCTTTACTCGAAAGAAAAGAACGTAGCAAGTCGTGTGGGTCATAAGATCCTGGAAAATGGACAACGAGTTCGCTACCTCATTAAAACTGGTGAGATAATAGACAATGCAGAGAACTGGAAGAAGCTGAAAGAAGAAAAAAAGAAAACTGAAGTAGCTGTATCTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006464 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008940 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009144 GO:0009150 GO:0009199 GO:0009205 GO:0009259 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016491 GO:0016661 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0018315 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0030151 GO:0032324 GO:0032870 GO:0034641 GO:0036211 GO:0042040 GO:0042221 GO:0042278 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046483 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051189 GO:0051716 GO:0055086 GO:0055114 GO:0061598 GO:0061599 GO:0065007 GO:0070566 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 ko04727 map00790 map01100 map04727

Pfam Domains

Protein Families

MoCF_biosynth MoeA_C MoeA_N

Protein Analysis

191

Amino Acids

21.29

Weight (kDa)

9.87

Isoelectric Point (pI)

32.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KOW	PF00467	72 - 103	2.1e-09	KOW motif
ribosomal_L24	PF17136	105 - 169	4.4e-20	Large ribosomal subunit protein uL24, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20990 AT5G20990 AT5G20990
fragaria_vesca	FvH4_3g26260 FvH4_3g26260 FvH4_3g26260 FvH4_3g26260 FvH4_3g26260
malus_domestica	MD11G1181200.v1.1
prunus_persica	Prupe.6G153900_v2.0.a1 Prupe.6G153900_v2.0.a1
pyrus_communis	pycom03g11700 pycom11g15630
rosa_chinensis	RchiOBHm_Chr5g0048741
rosa_laevigata	RLG00000034556
rosa_multiflora	Rmu_co8087680.1_g000001 Rmu_sc0003675.1_g000001 Rmu_sc0006432.1_g000010 Rmu_sc0006432.1_g000011 Rmu_sc0011208.1_g000008 Rmu_sc0027077.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033080
rosa_rugosa	Rorug05G0240900 Rorug05G0257800 Rorug05G0257900 Rorug05G0258000
rosa_samantha	Rh5AG320700 Rh5BG330500 Rh5CG356400 Rh5CG367600 Rh5DG341700
rosa_wichuraiana	Rw5G030150 Rw5G031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	160
AciI	CCGC	1 cut(s)	160
AclWI	GGATC	1 cut(s)	448
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	576
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	322, 399
AjnI	CCWGG	3 cut(s)	63, 358, 456
AloI	GAACNNNNNNTCC	2 cut(s)	459, 491
AluBI	AGCT	4 cut(s)	27, 386, 532, 563
AluI	AGCT	4 cut(s)	27, 386, 532, 563
Alw21I	GWGCWC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	448
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	2 cut(s)	5, 14
ApoI	RAATTY	1 cut(s)	316
ArsI	GACNNNNNNTTYG	2 cut(s)	459, 491
AspS9I	GGNCC	1 cut(s)	67
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	3 cut(s)	72, 365, 509
BanII	GRGCYC	1 cut(s)	29
BbsI	GAAGAC	2 cut(s)	176, 329
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	17
BciT130I	CCWGG	3 cut(s)	65, 360, 458
BciVI	GTATCC	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	105
BfuI	GTATCC	1 cut(s)	214
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	2 cut(s)	6, 15
BlsI	GCNGC	2 cut(s)	7, 16
BmcAI	AGTACT	1 cut(s)	295
Bme1390I	CCNGG	4 cut(s)	65, 105, 360, 458
BmgT120I	GGNCC	1 cut(s)	67
BmrFI	CCNGG	4 cut(s)	65, 105, 360, 458
BmsI	GCATC	1 cut(s)	396
BpiI	GAAGAC	2 cut(s)	176, 329
BpmI	CTGGAG	2 cut(s)	5, 282
BpuMI	CCSGG	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	9, 64
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse1I	ACTGG	3 cut(s)	265, 499, 527
Bse3DI	GCAATG	1 cut(s)	158
BseBI	CCWGG	3 cut(s)	65, 360, 458
BseDI	CCNNGG	2 cut(s)	9, 64
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	1 cut(s)	158
BseNI	ACTGG	3 cut(s)	265, 499, 527
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	2 cut(s)	276, 453
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	448
BspQI	GCTCTTC	1 cut(s)	332
BsrBI	CCGCTC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	158
BsrI	ACTGG	3 cut(s)	265, 499, 527
BssECI	CCNNGG	2 cut(s)	9, 64
BssMI	GATC	2 cut(s)	276, 453
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	3 cut(s)	65, 360, 458
Bst4CI	ACNGT	4 cut(s)	182, 226, 298, 395
Bst6I	CTCTTC	2 cut(s)	332, 342
BstC8I	GCNNGC	1 cut(s)	173
BstDSI	CCRYGG	1 cut(s)	9
BstKTI	GATC	2 cut(s)	279, 456
BstMBI	GATC	2 cut(s)	276, 453
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 14, 157, 569
BstNI	CCWGG	3 cut(s)	65, 360, 458
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	4 cut(s)	63, 103, 358, 456
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	2 cut(s)	176, 329
BstX2I	RGATCY	2 cut(s)	276, 453
BstYI	RGATCY	2 cut(s)	276, 453
BsuI	GTATCC	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	9
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	294
CspCI	CAANNNNNGTGG	2 cut(s)	423, 458
CviAII	CATG	4 cut(s)	10, 31, 206, 245
CviJI	RGCY	9 cut(s)	8, 14, 27, 69, 124, 175, 386, 532, 563
CviKI_1	RGCY	9 cut(s)	8, 14, 27, 69, 124, 175, 386, 532, 563
CviQI	GTAC	1 cut(s)	294
DpnI	GATC	2 cut(s)	278, 455
DpnII	GATC	2 cut(s)	276, 453
Eam1104I	CTCTTC	2 cut(s)	332, 342
EarI	CTCTTC	2 cut(s)	332, 342
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	576
EcoICRI	GAGCTC	1 cut(s)	27
EcoRII	CCWGG	3 cut(s)	63, 358, 456
EcoT14I	CCWWGG	1 cut(s)	9
EcoT22I	ATGCAT	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	4 cut(s)	13, 34, 209, 248
FaiI	YATR	9 cut(s)	11, 32, 207, 236, 246, 314, 333, 335, 450
FatI	CATG	4 cut(s)	9, 30, 205, 244
FauNDI	CATATG	1 cut(s)	333
Fnu4HI	GCNGC	2 cut(s)	6, 15
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	6, 15
GluI	GCNGC	2 cut(s)	6, 15
GsuI	CTGGAG	2 cut(s)	5, 282
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	1 cut(s)	104
Hin1II	CATG	4 cut(s)	13, 34, 209, 248
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HpaI	GTTAAC	1 cut(s)	114
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	3 cut(s)	72, 365, 509
Hpy166II	GTNNAC	2 cut(s)	114, 356
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	2 cut(s)	22, 240
Hpy8I	GTNNAC	2 cut(s)	114, 356
HpyAV	CCTTC	3 cut(s)	70, 157, 374
HpyCH4III	ACNGT	4 cut(s)	182, 226, 298, 395
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	4 cut(s)	17, 171, 205, 515
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 14, 157, 569
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	4 cut(s)	13, 34, 209, 248
KspAI	GTTAAC	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	276, 453
LguI	GCTCTTC	1 cut(s)	332
LmnI	GCTCC	3 cut(s)	32, 157, 383
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	396
MaeII	ACGT	1 cut(s)	429
MalI	GATC	2 cut(s)	278, 455
MbiI	CCGCTC	1 cut(s)	160
MboI	GATC	2 cut(s)	276, 453
MboII	GAAGA	6 cut(s)	176, 334, 349, 359, 538, 551
MflI	RGATCY	2 cut(s)	276, 453
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	2 cut(s)	189, 316
MnlI	CCTC	6 cut(s)	46, 61, 86, 95, 343, 494
Mph1103I	ATGCAT	1 cut(s)	207
MseI	TTAA	7 cut(s)	113, 146, 210, 282, 306, 372, 489
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	4 cut(s)	65, 105, 360, 458
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	3 cut(s)	65, 360, 458
MwoI	GCNNNNNNNGC	4 cut(s)	11, 14, 157, 569
NciI	CCSGG	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	9
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	2 cut(s)	276, 453
NlaIII	CATG	4 cut(s)	13, 34, 209, 248
NsiI	ATGCAT	1 cut(s)	207
NspI	RCATGY	1 cut(s)	209
PciSI	GCTCTTC	1 cut(s)	332
PctI	GAATGC	1 cut(s)	173
PfoI	TCCNGGA	1 cut(s)	456
PkrI	GCNGC	2 cut(s)	7, 16
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	3 cut(s)	63, 358, 456
PspGI	CCWGG	3 cut(s)	63, 358, 456
PspPI	GGNCC	1 cut(s)	67
PsuI	RGATCY	2 cut(s)	276, 453
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SacI	GAGCTC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	332
SaqAI	TTAA	7 cut(s)	113, 146, 210, 282, 306, 372, 489
SatI	GCNGC	2 cut(s)	6, 15
Sau3AI	GATC	2 cut(s)	276, 453
Sau96I	GGNCC	1 cut(s)	67
ScaI	AGTACT	1 cut(s)	295
ScrFI	CCNGG	4 cut(s)	65, 105, 360, 458
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	9 cut(s)	29, 38, 216, 378, 388, 432, 486, 534, 565
SfaNI	GCATC	1 cut(s)	396
Sse9I	AATT	2 cut(s)	189, 316
SsiI	CCGC	1 cut(s)	160
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	4 cut(s)	63, 103, 358, 456
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	4 cut(s)	182, 226, 298, 395
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	1 cut(s)	416
TasI	AATT	2 cut(s)	189, 316
TatI	WGTACW	1 cut(s)	293
Tru1I	TTAA	7 cut(s)	113, 146, 210, 282, 306, 372, 489
Tru9I	TTAA	7 cut(s)	113, 146, 210, 282, 306, 372, 489
TscAI	CASTG	1 cut(s)	231
TseI	GCWGC	2 cut(s)	5, 14
TspDTI	ATGAA	2 cut(s)	261, 350
TspRI	CASTG	1 cut(s)	231
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	1 cut(s)	209
ZrmI	AGTACT	1 cut(s)	295
Zsp2I	ATGCAT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.