Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004056

Physical Location & Seq

Genomic Coordinates Forward (+)

46569199 .. 46576218

Gene Structure 7020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG341700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1998 bp

ATGATGGCGGAGACCAAACCCACACTGCTCTCCGCGGAGGAGGCTCTGGAAATAGTTCTGAGAGTTATCCAGCGGCTGCCACCTGTCACGGTGCCCCTCCACGATGCCCTCGGGAAGGTCTTGGCCGAGGACATTCGCGCCGGCGACCCTCTGCCTCCTTTCCCTGCATCCATCAAGGATGGATATGCAGTGGTAGCTTCAGATGGGCCTGGAGAGTATCCTGTAGTTGCTGAAGCAAGAGCCGGTAGCGATGGAATCGGCGTCACTGTCACCCCTGGGACTGTGGCATATGTTACTACTGGAGGACCGATACCTGATGGTGCTGATGCAGTTGTACAAGTTGAGGACACTGAACAGGTGCATGTGCATTCACATGAATCAAGGCGAGTGAGAATACTGGTACAGACGAGCAAAGGAGTTGATATACGTCCAGTGGGATGTGACATTGAGAAAGATGATGGAGTATTGATATCTGGACAAAGAATTGGTGCTGCAGAAATTGGTATACTTGCTACTGTCGGAAGGACAATGGTGAAGGTATATCCCACTCCAAAAATCGGTGTGCTTTCCACGGGAGATGAACTTGTAGAGCCAACGACAGGATGTCTGAGTCGCGGCCAGATCAGGGACTCCAACCGTGCTATGATAATGGCAGCTTCACTACAGCATCATTGTGAAGTTAGTGATTTCGGCATAACTAGAGATGATGAAGAAGGACTCGAAAAGATCATAGATACTGTCATTTCTGCTGGAATTGATATTCTTCTCACCTCTGGAGGTGTTTCTATGGGAGATAAGGACTTTGTCAAACCACTGTTGCATAAGAAAGGGACGGTGCATTTCAGTAAGGTGTGGATGAAACCAGGGAAACCATTGACTTTCGCGGAGATCAATTCTGAACCAGCAGATAAAATGAGAATGAGAAAACTTTTTGCGTTTGGGCTGCCTGGAAATCCAGTTAGCTGTCTTGTCTGCTTCCATCTATTTGTGGTACCAACCATCCGCTTTCTTGCTGGATGGGCAGACCCTTTGCCTTTCAGAGTGCAGGCTCGCCTTCTCCAGCCTGTAAAGACAGATCCAGTCCGTCCAGAATTCCATTCTGCTATCGTCAAATGGGAGTTAAATAAGGGATTGGATAATCCAGGCTTTGTTGCGGAAAGTACTGGCCACCAGAGAAGCAGCAAGATTTTAAGTATGAAATCTGCTAATGCGTTGTTGGAGTTGCCTGCAACAGGCAGTGTAATGCCCGCTGGGACTTCTGTGTCAGCCATTATTATTTCCGATATAAGTACTGCTGCTATTAATAAAACTTCCTCATCCCTGGGTCCAGCTTCTCATATAGAAAGATTTAGAACACAAGAATTATCCGTAGCTGAGTCTTGCGATGCTGAGTTCAGAGTAGCTATTCTTACCGTGAGTGATACTGTTGCATCCGGGGCTGGGCCGGATAGGAGTGGTCCAAGGGCAGTTTCTGTTGTAACTTCTTGTTCAGAAAGGTTGGGAGGAGCCAAGGTTGTTTCAACGGCTGTGGTACCAGATGATGTAAGCAAAATTAAGGATGTTCTGCAGAGATGGAGTGATATCGAGAATATGGATCTCATCCTCACCCTTGGTGGCACTGGATTTACCCCCCGAGATGTAACTCCAGAAGCAACCAAAGAGTTGATTGAGAAAGAAACACCTGGTCTTCTTCTTGTCATGATGCAAGAGAGTTTAAAGGTGACACCATTTGCTATGCTCTCCCGTGCTGCAGCAGGAATAAGAGGGTCAACATTGATCATCAACATGCCGGGGAATCCAAATGCGGTTGCTGAGTGCATGGAGGCTTTGTTGCCTGCCCTCAAGCATGGATTAAAGCAGATAAAGGGAGATAAGAGAGAAAAACATCCTCGACATGTCCCTCATGCGCAAGCTGCGTCCATGGATACTTGGGAGCACAGTTATAAGTTGGCCTCGGGTACTGGTAAAGACTCGTCTGGTTGTTCTTGTTGCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006464 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008940 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009144 GO:0009150 GO:0009199 GO:0009205 GO:0009259 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016491 GO:0016661 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0018315 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0030151 GO:0032324 GO:0032870 GO:0034641 GO:0036211 GO:0042040 GO:0042221 GO:0042278 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046483 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051189 GO:0051716 GO:0055086 GO:0055114 GO:0061598 GO:0061599 GO:0065007 GO:0070566 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 ko04727 map00790 map01100 map04727

Pfam Domains

Protein Families

MoCF_biosynth MoeA_C MoeA_N

Protein Analysis

665

Amino Acids

70.79

Weight (kDa)

6.09

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MoeA_N	PF03453	10 - 174	9.2e-40	MoeA N-terminal region (domain I and II)
MoCF_biosynth	PF00994	187 - 335	1.6e-27	Probable molybdopterin binding domain
MoeA_C	PF03454	349 - 424	1.3e-08	MoeA C-terminal region (domain IV)
MoCF_biosynth	PF00994	468 - 616	5.7e-31	Probable molybdopterin binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20990 AT5G20990 AT5G20990
fragaria_vesca	FvH4_3g26260 FvH4_3g26260 FvH4_3g26260 FvH4_3g26260 FvH4_3g26260
malus_domestica	MD11G1181200.v1.1
prunus_persica	Prupe.6G153900_v2.0.a1 Prupe.6G153900_v2.0.a1
pyrus_communis	pycom03g11700 pycom11g15630
rosa_chinensis	RchiOBHm_Chr5g0048741
rosa_laevigata	RLG00000034556
rosa_multiflora	Rmu_co8087680.1_g000001 Rmu_sc0003675.1_g000001 Rmu_sc0006432.1_g000010 Rmu_sc0006432.1_g000011 Rmu_sc0011208.1_g000008 Rmu_sc0027077.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033080
rosa_rugosa	Rorug05G0240900 Rorug05G0257800 Rorug05G0257900 Rorug05G0258000
rosa_samantha	Rh5AG320700 Rh5BG330500 Rh5CG356400 Rh5CG367600 Rh5DG341700
rosa_wichuraiana	Rw5G030150 Rw5G031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1944
AasI	GACNNNNNNGTC	1 cut(s)	1261
Acc16I	TGCGCA	1 cut(s)	1908
Acc65I	GGTACC	2 cut(s)	991, 1531
AccB1I	GGYRCC	3 cut(s)	91, 991, 1531
AccI	GTMKAC	1 cut(s)	505
AccII	CGCG	4 cut(s)	35, 138, 615, 884
AclWI	GGATC	2 cut(s)	1070, 1602
AcoI	YGGCCR	3 cut(s)	123, 616, 1165
AcsI	RAATTY	1 cut(s)	1091
AcuI	CTGAAG	2 cut(s)	183, 252
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	7 cut(s)	336, 402, 993, 1162, 1291, 1533, 1960
AfiI	CCNNNNNNNGG	6 cut(s)	115, 557, 599, 625, 1232, 1440
AflIII	ACRYGT	1 cut(s)	1894
AgsI	TTSAA	1 cut(s)	1521
AhdI	GACNNNNNGTC	1 cut(s)	603
AjnI	CCWGG	7 cut(s)	208, 274, 862, 946, 1141, 1320, 1681
AjuI	GAANNNNNNNTTGG	2 cut(s)	1453, 1485
AluBI	AGCT	7 cut(s)	197, 656, 963, 1331, 1373, 1403, 1913
AluI	AGCT	7 cut(s)	197, 656, 963, 1331, 1373, 1403, 1913
Alw21I	GWGCWC	1 cut(s)	1938
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	2 cut(s)	1070, 1602
AlwNI	CAGNNNCTG	2 cut(s)	76, 1472
Ama87I	CYCGRG	3 cut(s)	110, 1632, 1954
AoxI	GGCC	6 cut(s)	123, 206, 616, 1165, 1442, 1950
ApeKI	GCWGC	9 cut(s)	76, 491, 653, 943, 1179, 1295, 1748, 1751, 1913
ApoI	RAATTY	1 cut(s)	1091
AseI	ATTAAT	1 cut(s)	1302
Asp700I	GAANNNNTTC	1 cut(s)	54
Asp718I	GGTACC	2 cut(s)	991, 1531
AspLEI	GCGC	2 cut(s)	140, 1909
AspS9I	GGNCC	5 cut(s)	206, 305, 1325, 1442, 1457
AsuC2I	CCSGG	2 cut(s)	1435, 1791
AsuHPI	GGTGA	5 cut(s)	262, 544, 760, 1597, 1732
AvaI	CYCGRG	3 cut(s)	110, 1632, 1954
AvaII	GGWCC	3 cut(s)	305, 1325, 1457
BaeGI	GKGCMC	1 cut(s)	96
BalI	TGGCCA	1 cut(s)	1167
BanI	GGYRCC	3 cut(s)	91, 991, 1531
BbsI	GAAGAC	1 cut(s)	1679
Bbv12I	GWGCWC	1 cut(s)	1938
BbvI	GCAGC	9 cut(s)	63, 478, 665, 930, 1191, 1282, 1735, 1763, 1900
BceAI	ACGGC	1 cut(s)	1539
BciT130I	CCWGG	7 cut(s)	210, 276, 864, 948, 1143, 1322, 1683
BciVI	GTATCC	2 cut(s)	228, 1918
BclI	TGATCA	1 cut(s)	1776
BcnI	CCSGG	2 cut(s)	1435, 1791
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	699
BfmI	CTRYAG	5 cut(s)	222, 492, 662, 1565, 1749
BfuI	GTATCC	2 cut(s)	228, 1918
BmcAI	AGTACT	2 cut(s)	1162, 1291
Bme1390I	CCNGG	9 cut(s)	210, 276, 864, 948, 1143, 1322, 1435, 1683, 1791
Bme18I	GGWCC	3 cut(s)	305, 1325, 1457
BmeRI	GACNNNNNGTC	1 cut(s)	603
BmeT110I	CYCGRG	3 cut(s)	110, 1632, 1954
BmgT120I	GGNCC	5 cut(s)	206, 305, 1325, 1442, 1457
BmiI	GGNNCC	5 cut(s)	93, 993, 1326, 1507, 1533
BmrFI	CCNGG	9 cut(s)	210, 276, 864, 948, 1143, 1322, 1435, 1683, 1791
BmsI	GCATC	7 cut(s)	94, 176, 316, 676, 1375, 1439, 1692
BpiI	GAAGAC	1 cut(s)	1679
BpmI	CTGGAG	5 cut(s)	231, 321, 795, 1043, 1629
BpuEI	CTTGAG	1 cut(s)	1826
BpuMI	CCSGG	2 cut(s)	1435, 1791
BsaHI	GRCGYC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	5
BsaXI	ACNNNNNCTCC	4 cut(s)	1497, 1527, 1814, 1844
Bsc4I	CCNNNNNNNGG	6 cut(s)	115, 557, 599, 625, 1232, 1440
Bse118I	RCCGGY	2 cut(s)	140, 242
Bse1I	ACTGG	8 cut(s)	304, 402, 431, 956, 1079, 1168, 1624, 1966
BseBI	CCWGG	7 cut(s)	210, 276, 864, 948, 1143, 1322, 1683
BseLI	CCNNNNNNNGG	6 cut(s)	115, 557, 599, 625, 1232, 1440
BseMII	CTCAG	5 cut(s)	50, 599, 1365, 1380, 1803
BseNI	ACTGG	8 cut(s)	304, 402, 431, 956, 1079, 1168, 1624, 1966
BseRI	GAGGAG	2 cut(s)	53, 1518
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	9 cut(s)	63, 478, 665, 930, 1191, 1282, 1735, 1763, 1900
BseYI	CCCAGC	2 cut(s)	1250, 1439
BsgI	GTGCAG	1 cut(s)	1064
Bsh1236I	CGCG	4 cut(s)	35, 138, 615, 884
BshFI	GGCC	6 cut(s)	125, 208, 618, 1167, 1444, 1952
BshNI	GGYRCC	3 cut(s)	91, 991, 1531
BsiHKAI	GWGCWC	1 cut(s)	1938
BsiHKCI	CYCGRG	3 cut(s)	110, 1632, 1954
BsiSI	CCGG	5 cut(s)	141, 243, 1434, 1445, 1790
BslFI	GGGAC	5 cut(s)	292, 641, 844, 1267, 1883
BslI	CCNNNNNNNGG	6 cut(s)	115, 557, 599, 625, 1232, 1440
BsmAI	GTCTC	1 cut(s)	5
BsmFI	GGGAC	5 cut(s)	292, 641, 844, 1267, 1883
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	6 cut(s)	125, 208, 618, 1167, 1444, 1952
Bso31I	GGTCTC	1 cut(s)	5
BsoBI	CYCGRG	3 cut(s)	110, 1632, 1954
Bsp1286I	GDGCHC	2 cut(s)	96, 1938
Bsp1407I	TGTACA	1 cut(s)	334
Bsp143I	GATC	6 cut(s)	621, 726, 888, 1075, 1594, 1776
Bsp19I	CCATGG	1 cut(s)	1920
BspANI	GGCC	6 cut(s)	125, 208, 618, 1167, 1444, 1952
BspCNI	CTCAG	5 cut(s)	51, 600, 1366, 1381, 1804
BspFNI	CGCG	4 cut(s)	35, 138, 615, 884
BspHI	TCATGA	1 cut(s)	1698
BspLI	GGNNCC	5 cut(s)	93, 993, 1326, 1507, 1533
BspMAI	CTGCAG	3 cut(s)	496, 1569, 1753
BspPI	GGATC	2 cut(s)	1070, 1602
BspT107I	GGYRCC	3 cut(s)	91, 991, 1531
BspTNI	GGTCTC	1 cut(s)	5
BsrFI	RCCGGY	2 cut(s)	140, 242
BsrGI	TGTACA	1 cut(s)	334
BsrI	ACTGG	8 cut(s)	304, 402, 431, 956, 1079, 1168, 1624, 1966
BssAI	RCCGGY	2 cut(s)	140, 242
BssMI	GATC	6 cut(s)	621, 726, 888, 1075, 1594, 1776
BssNAI	GTATAC	1 cut(s)	506
BssNI	GRCGYC	1 cut(s)	261
BssT1I	CCWWGG	4 cut(s)	1460, 1509, 1609, 1920
Bst1107I	GTATAC	1 cut(s)	506
Bst2UI	CCWGG	7 cut(s)	210, 276, 864, 948, 1143, 1322, 1683
BstACI	GRCGYC	1 cut(s)	261
BstAUI	TGTACA	1 cut(s)	334
BstC8I	GCNNGC	7 cut(s)	142, 1047, 1051, 1227, 1248, 1836, 1911
BstDEI	CTNAG	5 cut(s)	59, 608, 1374, 1389, 1812
BstDSI	CCRYGG	3 cut(s)	33, 570, 1920
BstENI	CCTNNNNNAGG	2 cut(s)	113, 1230
BstFNI	CGCG	4 cut(s)	35, 138, 615, 884
BstHHI	GCGC	2 cut(s)	140, 1909
BstKTI	GATC	6 cut(s)	624, 729, 891, 1078, 1597, 1779
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	6 cut(s)	621, 726, 888, 1075, 1594, 1776
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 194, 1019, 1436, 1913
BstNI	CCWGG	7 cut(s)	210, 276, 864, 948, 1143, 1322, 1683
BstNSI	RCATGY	3 cut(s)	365, 1789, 1898
BstSCI	CCNGG	9 cut(s)	208, 274, 862, 946, 1141, 1320, 1433, 1681, 1789
BstSFI	CTRYAG	5 cut(s)	222, 492, 662, 1565, 1749
BstSLI	GKGCMC	1 cut(s)	96
BstUI	CGCG	4 cut(s)	35, 138, 615, 884
BstV1I	GCAGC	9 cut(s)	63, 478, 665, 930, 1191, 1282, 1735, 1763, 1900
BstV2I	GAAGAC	1 cut(s)	1679
BstX2I	RGATCY	2 cut(s)	1075, 1594
BstYI	RGATCY	2 cut(s)	1075, 1594
BstZ17I	GTATAC	1 cut(s)	506
BsuI	GTATCC	2 cut(s)	228, 1918
BsuRI	GGCC	6 cut(s)	125, 208, 618, 1167, 1444, 1952
BtgI	CCRYGG	3 cut(s)	33, 570, 1920
BtgZI	GCGATG	2 cut(s)	264, 1398
BtsI	GCAGTG	3 cut(s)	23, 195, 1243
BtsIMutI	CAGTG	8 cut(s)	23, 195, 264, 348, 438, 812, 1243, 1617
Cac8I	GCNNGC	7 cut(s)	142, 1047, 1051, 1227, 1248, 1836, 1911
CaiI	CAGNNNCTG	2 cut(s)	76, 1472
CciI	TCATGA	1 cut(s)	1698
CfoI	GCGC	2 cut(s)	140, 1909
Cfr10I	RCCGGY	2 cut(s)	140, 242
Cfr13I	GGNCC	5 cut(s)	206, 305, 1325, 1442, 1457
Cfr42I	CCGCGG	1 cut(s)	36
CseI	GACGC	2 cut(s)	250, 1905
CsiI	ACCWGGT	1 cut(s)	1681
Csp6I	GTAC	7 cut(s)	335, 401, 992, 1161, 1290, 1532, 1959
CspCI	CAANNNNNGTGG	2 cut(s)	1509, 1544
CviAII	CATG	9 cut(s)	362, 374, 1699, 1786, 1819, 1847, 1895, 1904, 1921
CviQI	GTAC	7 cut(s)	335, 401, 992, 1161, 1290, 1532, 1959
DdeI	CTNAG	5 cut(s)	59, 608, 1374, 1389, 1812
DpnI	GATC	6 cut(s)	623, 728, 890, 1077, 1596, 1778
DpnII	GATC	6 cut(s)	621, 726, 888, 1075, 1594, 1776
DraI	TTTAAA	1 cut(s)	1716
DrdI	GACNNNNNNGTC	1 cut(s)	1261
DriI	GACNNNNNGTC	1 cut(s)	603
DseDI	GACNNNNNNGTC	1 cut(s)	1261
EaeI	YGGCCR	3 cut(s)	123, 616, 1165
Eam1105I	GACNNNNNGTC	1 cut(s)	603
EciI	GGCGGA	1 cut(s)	23
Eco130I	CCWWGG	4 cut(s)	1460, 1509, 1609, 1920
Eco31I	GGTCTC	1 cut(s)	5
Eco32I	GATATC	2 cut(s)	471, 1582
Eco47I	GGWCC	3 cut(s)	305, 1325, 1457
Eco57I	CTGAAG	2 cut(s)	183, 252
Eco88I	CYCGRG	3 cut(s)	110, 1632, 1954
EcoNI	CCTNNNNNAGG	2 cut(s)	113, 1230
EcoRI	GAATTC	1 cut(s)	1091
EcoRII	CCWGG	7 cut(s)	208, 274, 862, 946, 1141, 1320, 1681
EcoRV	GATATC	2 cut(s)	471, 1582
EcoT14I	CCWWGG	4 cut(s)	1460, 1509, 1609, 1920
ErhI	CCWWGG	4 cut(s)	1460, 1509, 1609, 1920
FaeI	CATG	9 cut(s)	365, 377, 1702, 1789, 1822, 1850, 1898, 1907, 1924
FaqI	GGGAC	5 cut(s)	292, 641, 844, 1267, 1883
FatI	CATG	9 cut(s)	361, 373, 1698, 1785, 1818, 1846, 1894, 1903, 1920
FauI	CCCGC	1 cut(s)	1255
FauNDI	CATATG	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	1776
FblI	GTMKAC	1 cut(s)	505
FspBI	CTAG	1 cut(s)	699
FspI	TGCGCA	1 cut(s)	1908
GlaI	GCGC	2 cut(s)	139, 1908
GsaI	CCCAGC	2 cut(s)	1254, 1443
GsuI	CTGGAG	5 cut(s)	231, 321, 795, 1043, 1629
HaeIII	GGCC	6 cut(s)	125, 208, 618, 1167, 1444, 1952
HapII	CCGG	5 cut(s)	141, 243, 1434, 1445, 1790
HgaI	GACGC	2 cut(s)	250, 1905
HhaI	GCGC	2 cut(s)	140, 1909
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	9 cut(s)	365, 377, 1702, 1789, 1822, 1850, 1898, 1907, 1924
Hin6I	GCGC	2 cut(s)	138, 1907
HinP1I	GCGC	2 cut(s)	138, 1907
HincII	GTYRAC	1 cut(s)	1770
HindII	GTYRAC	1 cut(s)	1770
HinfI	GANTC	8 cut(s)	255, 377, 610, 629, 717, 1376, 1795, 1970
HpaII	CCGG	5 cut(s)	141, 243, 1434, 1445, 1790
HphI	GGTGA	5 cut(s)	262, 544, 760, 1597, 1732
Hpy166II	GTNNAC	2 cut(s)	506, 1770
Hpy188I	TCNGA	9 cut(s)	60, 202, 521, 609, 898, 1040, 1282, 1397, 1492
Hpy188III	TCNNGA	8 cut(s)	47, 112, 474, 774, 1088, 1585, 1646, 1699
Hpy8I	GTNNAC	2 cut(s)	506, 1770
HpyAV	CCTTC	5 cut(s)	109, 516, 529, 707, 1064
HpyCH4IV	ACGT	1 cut(s)	427
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 194, 1019, 1436, 1913
HpyF3I	CTNAG	5 cut(s)	59, 608, 1374, 1389, 1812
HpySE526I	ACGT	1 cut(s)	427
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	9 cut(s)	365, 377, 1702, 1789, 1822, 1850, 1898, 1907, 1924
HspAI	GCGC	2 cut(s)	138, 1907
KpnI	GGTACC	2 cut(s)	995, 1535
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
Ksp22I	TGATCA	1 cut(s)	1776
KspI	CCGCGG	1 cut(s)	36
Kzo9I	GATC	6 cut(s)	621, 726, 888, 1075, 1594, 1776
LmnI	GCTCC	2 cut(s)	1505, 1933
Lsp1109I	GCAGC	9 cut(s)	63, 478, 665, 930, 1191, 1282, 1735, 1763, 1900
LweI	GCATC	7 cut(s)	94, 176, 316, 676, 1375, 1439, 1692
MabI	ACCWGGT	1 cut(s)	1681
MaeI	CTAG	1 cut(s)	699
MaeII	ACGT	1 cut(s)	427
MaeIII	GTNAC	8 cut(s)	85, 262, 268, 292, 440, 1477, 1639, 1720
MalI	GATC	6 cut(s)	623, 728, 890, 1077, 1596, 1778
MboI	GATC	6 cut(s)	621, 726, 888, 1075, 1594, 1776
MboII	GAAGA	4 cut(s)	722, 755, 1679, 1682
MflI	RGATCY	2 cut(s)	1075, 1594
MhlI	GDGCHC	2 cut(s)	96, 1938
MlsI	TGGCCA	1 cut(s)	1167
MluCI	AATT	7 cut(s)	483, 498, 753, 892, 1091, 1361, 1551
MluNI	TGGCCA	1 cut(s)	1167
MlyI	GAGTC	5 cut(s)	619, 623, 711, 1385, 1964
MmeI	TCCRAC	3 cut(s)	499, 657, 1197
Mox20I	TGGCCA	1 cut(s)	1167
MreI	CGCCGGCG	1 cut(s)	140
MroNI	GCCGGC	1 cut(s)	140
MroXI	GAANNNNTTC	1 cut(s)	54
MscI	TGGCCA	1 cut(s)	1167
MseI	TTAA	7 cut(s)	1121, 1190, 1302, 1554, 1715, 1853, 1996
MslI	CAYNNNNRTG	3 cut(s)	372, 672, 1784
Msp20I	TGGCCA	1 cut(s)	1167
MspA1I	CMGCKG	3 cut(s)	35, 73, 1250
MspI	CCGG	5 cut(s)	141, 243, 1434, 1445, 1790
MspR9I	CCNGG	9 cut(s)	210, 276, 864, 948, 1143, 1322, 1435, 1683, 1791
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	7 cut(s)	210, 276, 864, 948, 1143, 1322, 1683
MvnI	CGCG	4 cut(s)	35, 138, 615, 884
MwoI	GCNNNNNNNGC	5 cut(s)	41, 194, 1019, 1436, 1913
NaeI	GCCGGC	1 cut(s)	142
NciI	CCSGG	2 cut(s)	1435, 1791
NcoI	CCATGG	1 cut(s)	1920
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	6 cut(s)	621, 726, 888, 1075, 1594, 1776
NgoMIV	GCCGGC	1 cut(s)	140
NlaIII	CATG	9 cut(s)	365, 377, 1702, 1789, 1822, 1850, 1898, 1907, 1924
NlaIV	GGNNCC	5 cut(s)	93, 993, 1326, 1507, 1533
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	5 cut(s)	85, 262, 268, 440, 1720
NsbI	TGCGCA	1 cut(s)	1908
NspI	RCATGY	3 cut(s)	365, 1789, 1898
PagI	TCATGA	1 cut(s)	1698
PasI	CCCWGGG	2 cut(s)	275, 1321
PciI	ACATGT	1 cut(s)	1894
PctI	GAATGC	1 cut(s)	367
PdiI	GCCGGC	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	3 cut(s)	255, 377, 1795
PflFI	GACNNNGTC	1 cut(s)	803
PleI	GAGTC	5 cut(s)	618, 623, 711, 1384, 1964
PpsI	GAGTC	5 cut(s)	618, 623, 711, 1384, 1964
PscI	ACATGT	1 cut(s)	1894
PshBI	ATTAAT	1 cut(s)	1302
PsiI	TTATAA	1 cut(s)	1944
Psp6I	CCWGG	7 cut(s)	208, 274, 862, 946, 1141, 1320, 1681
PspFI	CCCAGC	2 cut(s)	1250, 1439
PspGI	CCWGG	7 cut(s)	208, 274, 862, 946, 1141, 1320, 1681
PspN4I	GGNNCC	5 cut(s)	93, 993, 1326, 1507, 1533
PspPI	GGNCC	5 cut(s)	206, 305, 1325, 1442, 1457
PstI	CTGCAG	3 cut(s)	496, 1569, 1753
PstNI	CAGNNNCTG	2 cut(s)	76, 1472
PsuI	RGATCY	2 cut(s)	1075, 1594
PsyI	GACNNNGTC	1 cut(s)	803
RsaI	GTAC	7 cut(s)	336, 402, 993, 1162, 1291, 1533, 1960
RsaNI	GTAC	7 cut(s)	335, 401, 992, 1161, 1290, 1532, 1959
RseI	CAYNNNNRTG	3 cut(s)	372, 672, 1784
SacII	CCGCGG	1 cut(s)	36
SaqAI	TTAA	7 cut(s)	1121, 1190, 1302, 1554, 1715, 1853, 1996
Sau3AI	GATC	6 cut(s)	621, 726, 888, 1075, 1594, 1776
Sau96I	GGNCC	5 cut(s)	206, 305, 1325, 1442, 1457
ScaI	AGTACT	2 cut(s)	1162, 1291
SchI	GAGTC	5 cut(s)	619, 623, 711, 1385, 1964
ScrFI	CCNGG	9 cut(s)	210, 276, 864, 948, 1143, 1322, 1435, 1683, 1791
SduI	GDGCHC	2 cut(s)	96, 1938
SexAI	ACCWGGT	1 cut(s)	1681
SfaNI	GCATC	7 cut(s)	94, 176, 316, 676, 1375, 1439, 1692
SfcI	CTRYAG	5 cut(s)	222, 492, 662, 1565, 1749
Sfr303I	CCGCGG	1 cut(s)	36
SgrAI	CRCCGGYG	1 cut(s)	140
SgrBI	CCGCGG	1 cut(s)	36
SinI	GGWCC	3 cut(s)	305, 1325, 1457
SmiMI	CAYNNNNRTG	3 cut(s)	372, 672, 1784
SmlI	CTYRAG	1 cut(s)	1841
SmoI	CTYRAG	1 cut(s)	1841
Sse9I	AATT	7 cut(s)	483, 498, 753, 892, 1091, 1361, 1551
SspMI	CTAG	1 cut(s)	699
StyD4I	CCNGG	9 cut(s)	208, 274, 862, 946, 1141, 1320, 1433, 1681, 1789
StyI	CCWWGG	4 cut(s)	1460, 1509, 1609, 1920
TaiI	ACGT	1 cut(s)	430
TaqI	TCGA	3 cut(s)	720, 1584, 1891
TaqII	GACCGA	1 cut(s)	322
TasI	AATT	7 cut(s)	483, 498, 753, 892, 1091, 1361, 1551
TatI	WGTACW	3 cut(s)	334, 1160, 1289
TauI	GCSGC	2 cut(s)	76, 618
TfiI	GAWTC	3 cut(s)	255, 377, 1795
Tru1I	TTAA	7 cut(s)	1121, 1190, 1302, 1554, 1715, 1853, 1996
Tru9I	TTAA	7 cut(s)	1121, 1190, 1302, 1554, 1715, 1853, 1996
TscAI	CASTG	8 cut(s)	30, 195, 271, 355, 438, 819, 1243, 1624
TseFI	GTSAC	5 cut(s)	85, 262, 268, 440, 1720
TseI	GCWGC	9 cut(s)	76, 491, 653, 943, 1179, 1295, 1748, 1751, 1913
Tsp45I	GTSAC	5 cut(s)	85, 262, 268, 440, 1720
TspDTI	ATGAA	5 cut(s)	390, 594, 723, 872, 1211
TspGWI	ACGGA	2 cut(s)	1073, 1357
TspRI	CASTG	8 cut(s)	30, 195, 271, 355, 438, 819, 1243, 1624
Tth111I	GACNNNGTC	1 cut(s)	803
VpaK11BI	GGWCC	3 cut(s)	305, 1325, 1457
VspI	ATTAAT	1 cut(s)	1302
XagI	CCTNNNNNAGG	2 cut(s)	113, 1230
XapI	RAATTY	1 cut(s)	1091
XceI	RCATGY	3 cut(s)	365, 1789, 1898
XmiI	GTMKAC	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	1 cut(s)	699
ZrmI	AGTACT	2 cut(s)	1162, 1291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.