Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011208.1

Orthogroup ID

OG0004056

Physical Location & Seq

Genomic Coordinates Reverse (-)

17065 .. 20405

Gene Structure 3341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011208.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atggtgtggatgaagccagggaaacccttgacttttgcggagatcaattctgaatcagcagataaaatgagaatgagaaaactttttgcgtttgggctgcctggaaatccagttagctgtcttgtctgcttccatctatttgtggtaccaaccatccgctttcttgctggatgggcagaccctttgcctttcagagtgcaggctcgccttcttcagcctgtaaagacagatccagtccgtccagaattccattctgctgttgtcagatgggagttaaataagggattggaaaggttgggaggagccaaggttgtttcaacggctgtggtaccagatgatgtaagcaaaattaaggatgttctgcagagatggagtgatatcgagaatatggatctcatcctcacccttggtggcactggatttaccccacgagatgtaactccagaagcaaccaaagagttgattgagaaagaaacacctggtcttcttcttgtcatgatgcaagagagtttaaaggtgacaccatttgctatgctctcccgtgctgcagcaggaataagagggtcaacattgatcatcaacatgccggggaatccaaatgcggttgctgagtgcatggaggctttgttgcctgccctcaagcatggattaaagcagataaagggagataagagagaaaaacatcctcgacatgcccctcatgcacaagctgcgtccttggatacttgggagcacagttataagttggcctcgggtactggtaaagactcgtctggttgttcttgttgccattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006464 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008940 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009144 GO:0009150 GO:0009199 GO:0009205 GO:0009259 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016491 GO:0016661 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0018315 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0030151 GO:0032324 GO:0032870 GO:0034641 GO:0036211 GO:0042040 GO:0042221 GO:0042278 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046483 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051189 GO:0051716 GO:0055086 GO:0055114 GO:0061598 GO:0061599 GO:0065007 GO:0070566 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 ko04727 map00790 map01100 map04727

Pfam Domains

Protein Families

MoCF_biosynth MoeA_C MoeA_N

Protein Analysis

264

Amino Acids

28.98

Weight (kDa)

9.03

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20990 AT5G20990 AT5G20990
fragaria_vesca	FvH4_3g26260 FvH4_3g26260 FvH4_3g26260 FvH4_3g26260 FvH4_3g26260
malus_domestica	MD11G1181200.v1.1
prunus_persica	Prupe.6G153900_v2.0.a1 Prupe.6G153900_v2.0.a1
pyrus_communis	pycom03g11700 pycom11g15630
rosa_chinensis	RchiOBHm_Chr5g0048741
rosa_laevigata	RLG00000034556
rosa_multiflora	Rmu_co8087680.1_g000001 Rmu_sc0003675.1_g000001 Rmu_sc0006432.1_g000010 Rmu_sc0006432.1_g000011 Rmu_sc0011208.1_g000008 Rmu_sc0027077.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033080
rosa_rugosa	Rorug05G0240900 Rorug05G0257800 Rorug05G0257900 Rorug05G0258000
rosa_samantha	Rh5AG320700 Rh5BG330500 Rh5CG356400 Rh5CG367600 Rh5DG341700
rosa_wichuraiana	Rw5G030150 Rw5G031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	741
Acc65I	GGTACC	2 cut(s)	145, 328
AccB1I	GGYRCC	2 cut(s)	145, 328
AciI	CCGC	3 cut(s)	38, 157, 602
AclWI	GGATC	2 cut(s)	224, 399
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	197
AfaI	GTAC	3 cut(s)	147, 330, 757
AgsI	TTSAA	1 cut(s)	318
AjnI	CCWGG	3 cut(s)	16, 100, 478
AluBI	AGCT	2 cut(s)	117, 710
AluI	AGCT	2 cut(s)	117, 710
Alw21I	GWGCWC	1 cut(s)	735
AlwI	GGATC	2 cut(s)	224, 399
Ama87I	CYCGRG	1 cut(s)	751
AoxI	GGCC	1 cut(s)	747
ApeKI	GCWGC	4 cut(s)	97, 545, 548, 710
ApoI	RAATTY	1 cut(s)	245
Asp718I	GGTACC	2 cut(s)	145, 328
AsuC2I	CCSGG	1 cut(s)	588
AsuHPI	GGTGA	2 cut(s)	394, 529
AvaI	CYCGRG	1 cut(s)	751
BanI	GGYRCC	2 cut(s)	145, 328
BauI	CACGAG	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	735
BbvI	GCAGC	4 cut(s)	84, 532, 560, 697
BccI	CCATC	5 cut(s)	141, 161, 165, 261, 363
BceAI	ACGGC	1 cut(s)	336
BciT130I	CCWGG	3 cut(s)	18, 102, 480
BciVI	GTATCC	1 cut(s)	715
BclI	TGATCA	1 cut(s)	573
BcnI	CCSGG	1 cut(s)	588
BfmI	CTRYAG	2 cut(s)	362, 546
BfuI	GTATCC	1 cut(s)	715
BisI	GCNGC	4 cut(s)	98, 546, 549, 711
BlsI	GCNGC	4 cut(s)	99, 547, 550, 712
Bme1390I	CCNGG	4 cut(s)	18, 102, 480, 588
BmeT110I	CYCGRG	1 cut(s)	751
BmiI	GGNNCC	3 cut(s)	147, 304, 330
BmrFI	CCNGG	4 cut(s)	18, 102, 480, 588
BmsI	GCATC	1 cut(s)	489
BpiI	GAAGAC	1 cut(s)	476
BpmI	CTGGAG	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	623
BpuMI	CCSGG	1 cut(s)	588
BsaJI	CCNNGG	6 cut(s)	17, 306, 406, 587, 717, 750
BsaXI	ACNNNNNCTCC	4 cut(s)	294, 324, 611, 641
Bse1I	ACTGG	4 cut(s)	110, 233, 421, 763
BseBI	CCWGG	3 cut(s)	18, 102, 480
BseDI	CCNNGG	6 cut(s)	17, 306, 406, 587, 717, 750
BseGI	GGATG	6 cut(s)	15, 153, 176, 361, 396, 682
BseMII	CTCAG	1 cut(s)	600
BseNI	ACTGG	4 cut(s)	110, 233, 421, 763
BseRI	GAGGAG	1 cut(s)	315
BseXI	GCAGC	4 cut(s)	84, 532, 560, 697
BsgI	GTGCAG	1 cut(s)	218
BshFI	GGCC	1 cut(s)	749
BshNI	GGYRCC	2 cut(s)	145, 328
BsiHKAI	GWGCWC	1 cut(s)	735
BsiHKCI	CYCGRG	1 cut(s)	751
BsiSI	CCGG	1 cut(s)	587
BsnI	GGCC	1 cut(s)	749
BsoBI	CYCGRG	1 cut(s)	751
Bsp1286I	GDGCHC	1 cut(s)	735
Bsp143I	GATC	4 cut(s)	42, 229, 391, 573
BspACI	CCGC	3 cut(s)	38, 157, 602
BspANI	GGCC	1 cut(s)	749
BspCNI	CTCAG	1 cut(s)	601
BspHI	TCATGA	1 cut(s)	495
BspLI	GGNNCC	3 cut(s)	147, 304, 330
BspMAI	CTGCAG	2 cut(s)	366, 550
BspPI	GGATC	2 cut(s)	224, 399
BspT107I	GGYRCC	2 cut(s)	145, 328
BsrI	ACTGG	4 cut(s)	110, 233, 421, 763
BssECI	CCNNGG	6 cut(s)	17, 306, 406, 587, 717, 750
BssMI	GATC	4 cut(s)	42, 229, 391, 573
BssSI	CACGAG	1 cut(s)	429
BssT1I	CCWWGG	3 cut(s)	306, 406, 717
Bst2BI	CACGAG	1 cut(s)	429
Bst2UI	CCWGG	3 cut(s)	18, 102, 480
Bst4CI	ACNGT	1 cut(s)	737
BstAPI	GCANNNNNTGC	1 cut(s)	710
BstC8I	GCNNGC	3 cut(s)	201, 205, 633
BstDEI	CTNAG	1 cut(s)	609
BstF5I	GGATG	6 cut(s)	15, 153, 176, 361, 396, 682
BstKTI	GATC	4 cut(s)	45, 232, 394, 576
BstMBI	GATC	4 cut(s)	42, 229, 391, 573
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 701, 710
BstNI	CCWGG	3 cut(s)	18, 102, 480
BstNSI	RCATGY	2 cut(s)	586, 695
BstSCI	CCNGG	4 cut(s)	16, 100, 478, 586
BstSFI	CTRYAG	2 cut(s)	362, 546
BstV1I	GCAGC	4 cut(s)	84, 532, 560, 697
BstV2I	GAAGAC	1 cut(s)	476
BstX2I	RGATCY	2 cut(s)	229, 391
BstYI	RGATCY	2 cut(s)	229, 391
BsuI	GTATCC	1 cut(s)	715
BsuRI	GGCC	1 cut(s)	749
BtsCI	GGATG	6 cut(s)	15, 153, 176, 361, 396, 682
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	3 cut(s)	201, 205, 633
CciI	TCATGA	1 cut(s)	495
CseI	GACGC	1 cut(s)	702
CsiI	ACCWGGT	1 cut(s)	478
Csp6I	GTAC	3 cut(s)	146, 329, 756
CspCI	CAANNNNNGTGG	2 cut(s)	306, 341
CviAII	CATG	6 cut(s)	496, 583, 616, 644, 692, 701
CviQI	GTAC	3 cut(s)	146, 329, 756
DdeI	CTNAG	1 cut(s)	609
DpnI	GATC	4 cut(s)	44, 231, 393, 575
DpnII	GATC	4 cut(s)	42, 229, 391, 573
DraI	TTTAAA	1 cut(s)	513
Eco130I	CCWWGG	3 cut(s)	306, 406, 717
Eco32I	GATATC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	751
EcoRI	GAATTC	1 cut(s)	245
EcoRII	CCWGG	3 cut(s)	16, 100, 478
EcoRV	GATATC	1 cut(s)	379
EcoT14I	CCWWGG	3 cut(s)	306, 406, 717
ErhI	CCWWGG	3 cut(s)	306, 406, 717
FaeI	CATG	6 cut(s)	499, 586, 619, 647, 695, 704
FaiI	YATR	9 cut(s)	389, 497, 533, 584, 617, 645, 693, 702, 741
FatI	CATG	6 cut(s)	495, 582, 615, 643, 691, 700
FbaI	TGATCA	1 cut(s)	573
Fnu4HI	GCNGC	4 cut(s)	98, 546, 549, 711
FokI	GGATG	6 cut(s)	22, 140, 183, 368, 383, 669
Fsp4HI	GCNGC	4 cut(s)	98, 546, 549, 711
GluI	GCNGC	4 cut(s)	98, 546, 549, 711
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	749
HapII	CCGG	1 cut(s)	587
HgaI	GACGC	1 cut(s)	702
Hin1II	CATG	6 cut(s)	499, 586, 619, 647, 695, 704
HincII	GTYRAC	1 cut(s)	567
HindII	GTYRAC	1 cut(s)	567
HinfI	GANTC	3 cut(s)	53, 592, 767
HpaII	CCGG	1 cut(s)	587
HphI	GGTGA	2 cut(s)	394, 529
Hpy166II	GTNNAC	1 cut(s)	567
Hpy188I	TCNGA	3 cut(s)	52, 194, 266
Hpy188III	TCNNGA	4 cut(s)	242, 382, 443, 496
Hpy8I	GTNNAC	1 cut(s)	567
HpyAV	CCTTC	1 cut(s)	218
HpyCH4III	ACNGT	1 cut(s)	737
HpyCH4V	TGCA	6 cut(s)	199, 364, 502, 548, 615, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 701, 710
HpyF3I	CTNAG	1 cut(s)	609
Hsp92II	CATG	6 cut(s)	499, 586, 619, 647, 695, 704
KpnI	GGTACC	2 cut(s)	149, 332
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	4 cut(s)	42, 229, 391, 573
LmnI	GCTCC	2 cut(s)	302, 730
Lsp1109I	GCAGC	4 cut(s)	84, 532, 560, 697
LweI	GCATC	1 cut(s)	489
MabI	ACCWGGT	1 cut(s)	478
MaeIII	GTNAC	2 cut(s)	436, 517
MalI	GATC	4 cut(s)	44, 231, 393, 575
MboI	GATC	4 cut(s)	42, 229, 391, 573
MboII	GAAGA	3 cut(s)	203, 476, 479
MflI	RGATCY	2 cut(s)	229, 391
MhlI	GDGCHC	1 cut(s)	735
MluCI	AATT	3 cut(s)	46, 245, 348
MlyI	GAGTC	1 cut(s)	761
MnlI	CCTC	8 cut(s)	293, 410, 554, 613, 647, 696, 708, 760
MseI	TTAA	5 cut(s)	275, 351, 512, 650, 793
MslI	CAYNNNNRTG	1 cut(s)	581
MspI	CCGG	1 cut(s)	587
MspR9I	CCNGG	4 cut(s)	18, 102, 480, 588
MvaI	CCWGG	3 cut(s)	18, 102, 480
MwoI	GCNNNNNNNGC	3 cut(s)	173, 701, 710
NciI	CCSGG	1 cut(s)	588
NdeII	GATC	4 cut(s)	42, 229, 391, 573
NlaIII	CATG	6 cut(s)	499, 586, 619, 647, 695, 704
NlaIV	GGNNCC	3 cut(s)	147, 304, 330
NmuCI	GTSAC	1 cut(s)	517
NspI	RCATGY	2 cut(s)	586, 695
PagI	TCATGA	1 cut(s)	495
PfeI	GAWTC	2 cut(s)	53, 592
PkrI	GCNGC	4 cut(s)	99, 547, 550, 712
PleI	GAGTC	1 cut(s)	761
PpsI	GAGTC	1 cut(s)	761
PsiI	TTATAA	1 cut(s)	741
Psp6I	CCWGG	3 cut(s)	16, 100, 478
PspGI	CCWGG	3 cut(s)	16, 100, 478
PspN4I	GGNNCC	3 cut(s)	147, 304, 330
PstI	CTGCAG	2 cut(s)	366, 550
PsuI	RGATCY	2 cut(s)	229, 391
RsaI	GTAC	3 cut(s)	147, 330, 757
RsaNI	GTAC	3 cut(s)	146, 329, 756
RseI	CAYNNNNRTG	1 cut(s)	581
SaqAI	TTAA	5 cut(s)	275, 351, 512, 650, 793
SatI	GCNGC	4 cut(s)	98, 546, 549, 711
Sau3AI	GATC	4 cut(s)	42, 229, 391, 573
SchI	GAGTC	1 cut(s)	761
ScrFI	CCNGG	4 cut(s)	18, 102, 480, 588
SduI	GDGCHC	1 cut(s)	735
SetI	ASST	6 cut(s)	119, 296, 312, 481, 519, 712
SexAI	ACCWGGT	1 cut(s)	478
SfaNI	GCATC	1 cut(s)	489
SfcI	CTRYAG	2 cut(s)	362, 546
SmiMI	CAYNNNNRTG	1 cut(s)	581
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
Sse9I	AATT	3 cut(s)	46, 245, 348
SsiI	CCGC	3 cut(s)	38, 157, 602
StyD4I	CCNGG	4 cut(s)	16, 100, 478, 586
StyI	CCWWGG	3 cut(s)	306, 406, 717
TaaI	ACNGT	1 cut(s)	737
TaqI	TCGA	2 cut(s)	381, 688
TasI	AATT	3 cut(s)	46, 245, 348
TfiI	GAWTC	2 cut(s)	53, 592
Tru1I	TTAA	5 cut(s)	275, 351, 512, 650, 793
Tru9I	TTAA	5 cut(s)	275, 351, 512, 650, 793
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	4 cut(s)	97, 545, 548, 710
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	1 cut(s)	26
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	421
XapI	RAATTY	1 cut(s)	245
XceI	RCATGY	2 cut(s)	586, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.